Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 4.4e-184 647.9 347 100.0
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 3.7e-122 442.2 319 73.4
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 7.7e-120 434.5 336 72.3
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 4.5e-96 355.5 262 68.7
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 5.4e-89 332.0 262 66.0
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 5.4e-89 332.0 262 66.0
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 1.9e-86 323.6 265 64.9
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 1.4e-84 317.4 316 56.3
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 3.1e-84 316.2 349 53.0
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 4.9e-82 308.9 259 62.9
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 2.4e-81 306.6 328 54.0
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 2.4e-81 306.6 259 62.9
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 2.4e-81 306.6 260 61.2
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 3.2e-81 306.2 319 56.1
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 3.2e-81 306.2 262 61.8
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 5.4e-81 305.4 321 54.5
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 5.4e-81 305.4 268 59.7
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 9.2e-81 304.7 260 60.8
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 1.6e-80 303.9 261 62.8
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 1.3e-79 300.8 264 62.9
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 1.7e-79 300.4 262 61.8
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 3.0e-79 299.7 261 60.2
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 3.0e-79 299.7 260 61.9
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 6.6e-79 298.5 261 57.5
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 8.6e-79 298.1 316 53.2
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 1.5e-78 297.4 300 57.7
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 1.5e-78 297.4 261 60.5
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.5e-78 297.4 257 59.9
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.5e-78 297.4 257 59.9
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 1.9e-78 297.0 314 52.5
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 2.5e-78 296.6 262 60.7
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 3.3e-78 296.2 291 55.7
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 3.3e-78 296.2 265 60.4
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 7.3e-78 295.0 265 60.0
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 7.3e-78 295.0 262 60.3
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 2.1e-77 293.5 265 60.4
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 6.2e-77 292.0 288 56.9
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 6.2e-77 292.0 319 52.0
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 6.2e-77 292.0 318 53.1
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 8.1e-77 291.6 295 55.6
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.1e-76 291.2 346 50.9
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 1.4e-76 290.8 294 55.1
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 2.3e-76 290.0 270 57.8
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 5.2e-76 288.9 299 54.8
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 3.4e-75 286.2 262 57.6
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 3.4e-75 286.2 264 57.2
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 5.8e-75 285.4 332 51.8
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 2.2e-74 283.5 293 53.2
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 6.4e-74 282.0 290 55.9
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 8.3e-74 281.6 258 58.9
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 1.9e-73 280.4 284 56.3
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 2.4e-73 280.0 259 56.4
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 2.4e-73 280.0 259 57.9
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 4.1e-73 279.3 266 57.5
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 9.2e-73 278.1 290 55.2
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 1.2e-72 277.7 258 57.0
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 3.5e-72 276.2 312 51.3
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 3.5e-72 276.2 332 48.8
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 6.0e-72 275.4 291 55.3
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 6.0e-72 275.4 262 58.8
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 6.0e-72 275.4 262 58.4
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 6.0e-72 275.4 275 56.0
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 1.0e-71 274.6 265 57.0
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 1.3e-71 274.2 290 54.5
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 2.3e-71 273.5 264 58.0
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 3.0e-71 273.1 298 51.7
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 6.6e-71 271.9 303 50.8
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 1.1e-70 271.2 286 53.8
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 1.5e-70 270.8 266 56.8
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 2.1e-69 266.9 263 55.1
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 3.6e-69 266.2 291 54.0
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 6.8e-68 261.9 262 55.7
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 1.2e-67 261.2 286 49.7
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 2.6e-67 260.0 336 47.9
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 2.9e-66 256.5 262 54.2
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 3.8e-66 256.1 263 54.0
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 9.3e-65 251.5 262 53.4
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 3.5e-64 249.6 288 51.7
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 6.0e-64 248.8 316 44.6
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 3.9e-63 246.1 261 50.2
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 5.1e-63 245.7 262 51.5
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 5.6e-62 242.3 260 50.4
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 1.6e-61 240.7 269 48.3
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 3.4e-59 233.0 224 55.8
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 3.8e-58 229.6 203 57.6
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.4e-57 227.6 203 60.6
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 1.4e-57 227.6 263 49.8
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 9.3e-57 224.9 307 45.6
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 1.1e-54 218.0 371 39.6
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 4.3e-54 216.1 156 71.2
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 7.3e-54 215.3 235 52.3
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 2.4e-52 210.3 264 46.2
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 7.6e-51 205.3 153 69.3
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 2.1e-48 197.2 153 66.7
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 2.1e-48 197.2 262 42.4
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 3.9e-47 193.0 262 45.8
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 8.7e-47 191.8 262 45.4
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.1e-46 191.4 129 76.0
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 5.3e-44 182.6 221 48.9
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 9.0e-44 181.8 231 47.2
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 1.3e-42 177.9 254 39.4
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 3.8e-42 176.4 202 50.0
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 2.7e-40 170.2 154 61.0
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 8.7e-39 165.2 219 44.7
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 7.4e-38 162.2 224 44.2
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 8.2e-37 158.7 271 38.4
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 6.9e-36 155.6 181 43.1
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 1.0e-34 151.8 139 57.6
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.1e-30 138.3 100 71.0
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.5e-27 127.9 100 68.0
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 1.5e-27 127.9 143 51.7
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 5.0e-26 122.9 129 54.3
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 1.9e-25 120.9 98 63.3
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 1.2e-24 118.2 139 51.1
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 1.5e-22 111.3 85 65.9
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 4.3e-22 109.8 84 67.9
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.9e-17 94.4 107 49.5
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 2.7e-16 90.5 89 58.4
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 1.0e-15 88.6 69 63.8
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 1.4e-15 88.2 138 39.9
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 4.4e-14 83.2 80 58.8
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 1.4e-12 78.2 131 40.5
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 7.2e-09 65.9 57 56.1
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 2.1e-08 64.3 164 29.3
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 3.6e-08 63.5 47 66.0
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 1.8e-07 61.2 66 59.1
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 3.0e-07 60.5 86 44.2
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 4.0e-07 60.1 59 59.3
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 6.7e-07 59.3 95 35.8
Rhsim06G0131200 Rhododendron simsii HOM05D006699 ORTHO05D008399 6.7e-07 59.3 150 29.3
arahy.Tifrunner.gnm1.ann1.GAG0UF Arachis hypogaea HOM05D006699 ORTHO05D008399 8.8e-07 58.9 166 26.5
Haze_13371 Corylus avellana HOM05D006699 ORTHO05D008399 8.8e-07 58.9 150 30.0
Cfa023335 Carpinus fangiana HOM05D006699 ORTHO05D008399 1.1e-06 58.5 150 30.0
PGSC0003DMG400007857 Solanum tuberosum HOM05D006699 ORTHO05D008399 1.1e-06 58.5 150 29.3
arahy.Tifrunner.gnm1.ann1.0K2T49 Arachis hypogaea HOM05D006699 ORTHO05D008399 1.5e-06 58.2 166 26.5
CAN.G1049.6 Capsicum annuum HOM05D006699 ORTHO05D008399 1.5e-06 58.2 150 29.3
PGSC0003DMG400020443 Solanum tuberosum HOM05D006699 ORTHO05D008399 1.5e-06 58.2 150 28.7
Manes.02G091200 Manihot esculenta HOM05D006699 ORTHO05D008399 2.0e-06 57.8 150 30.0
MSTRG.15092 Avicennia marina HOM05D006699 ORTHO05D008399 2.6e-06 57.4 167 27.5
Dinv15443 Davidia involucrata HOM05D006699 ORTHO05D008399 2.6e-06 57.4 150 27.3
FAN09G4348 Fragaria x ananassa HOM05D006699 ORTHO05D008399 3.3e-06 57.0 150 27.3
Peaxi162Scf00384g00423 Petunia axillaris HOM05D006699 ORTHO05D008399 3.3e-06 57.0 150 27.3
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 3.3e-06 57.0 164 26.2
arahy.Tifrunner.gnm1.ann1.M13D0Y Arachis hypogaea HOM05D005386 ORTHO05D006981 4.4e-06 56.6 41 68.3
Peaxi162Scf00469g00217 Petunia axillaris HOM05D006699 ORTHO05D008399 4.4e-06 56.6 162 28.4
Sabra14G0107300 Salix brachista HOM05D006699 ORTHO05D008399 4.4e-06 56.6 166 27.1
Sopen12g006230 Solanum pennellii HOM05D006699 ORTHO05D008399 4.4e-06 56.6 150 29.3
Actinidia11153 Actinidia chinensis HOM05D006699 ORTHO05D008399 5.7e-06 56.2 146 29.5
CSS0012388 Camellia sinensis var. sinensis HOM05D006699 ORTHO05D008399 7.5e-06 55.8 166 25.9
Ca_18111_v3 Cicer arietinum L. HOM05D006699 ORTHO05D008399 7.5e-06 55.8 166 28.9
FvH4_2g10360 Fragaria vesca HOM05D005386 ORTHO05D006981 7.5e-06 55.8 46 56.5
Potri.014G142200 Populus trichocarpa HOM05D006699 ORTHO05D008399 7.5e-06 55.8 146 29.5
VMungo1127G1340 Vigna mungo HOM05D006699 ORTHO05D008399 7.5e-06 55.8 166 27.7
arahy.Tifrunner.gnm1.ann1.QCQ2D8 Arachis hypogaea HOM05D005386 ORTHO05D006981 9.7e-06 55.5 44 61.4
Nitab4.5_0000537g0130 Nicotiana tabacum HOM05D006699 ORTHO05D008399 9.7e-06 55.5 150 28.7


User provided reference genes

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