Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0182761 Helianthus annuus HOM05D002996 ORTHO05D003536 1.1e-59 233.0 113 100.0
HanXRQChr09g0262281 Helianthus annuus HOM05D002996 ORTHO05D003536 2.3e-25 119.0 69 82.6
HanXRQChr09g0262271 Helianthus annuus HOM05D002996 ORTHO05D003536 6.8e-25 117.5 56 96.4
GSVIVG01030858001 Vitis vinifera HOM05D002996 ORTHO05D003536 9.8e-24 113.6 56 91.1
Actinidia17659 Actinidia chinensis HOM05D002996 ORTHO05D003536 1.7e-23 112.8 56 87.5
ECA232G3169 Erigeron canadensis HOM05D002996 ORTHO05D003536 1.7e-23 112.8 56 91.1
Aqoxy3G00131_Aqoxy3G00132 Aquilegia oxysepala HOM05D002996 ORTHO05D003536 2.2e-23 112.5 56 87.5
Lsat_1_v5_gn_2_81521 Lactuca sativa HOM05D002996 ORTHO05D003536 2.2e-23 112.5 56 89.3
CSS0016713 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 2.9e-23 112.1 56 89.3
Dinv14879 Davidia involucrata HOM05D002996 ORTHO05D003536 2.9e-23 112.1 56 89.3
TAR622G0566 Trochodendron aralioides HOM05D002996 ORTHO05D003536 3.7e-23 111.7 56 89.3
CAN.G625.86 Capsicum annuum HOM05D002996 ORTHO05D003536 4.9e-23 111.3 56 89.3
MSTRG.3518 Avicennia marina HOM05D002996 ORTHO05D003536 6.4e-23 110.9 56 87.5
CSS0044512 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 6.4e-23 110.9 56 87.5
PGSC0003DMG402030647 Solanum tuberosum HOM05D002996 ORTHO05D003536 6.4e-23 110.9 56 87.5
HanXRQChr07g0193641 Helianthus annuus HOM05D002996 ORTHO05D003536 8.3e-23 110.5 56 87.5
Rhsim08G0086100 Rhododendron simsii HOM05D002996 ORTHO05D003536 8.3e-23 110.5 56 85.7
Solyc03g043660.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 8.3e-23 110.5 56 87.5
Sopen03g007520 Solanum pennellii HOM05D002996 ORTHO05D003536 8.3e-23 110.5 56 87.5
CSS0002683 Camellia sinensis var. sinensis HOM05D002996 ORTHO05D003536 1.1e-22 110.2 56 87.5
Ciclev10010941m.g Citrus clementina HOM05D002996 ORTHO05D003536 1.1e-22 110.2 56 85.7
Migut.L00466 Erythranthe guttata HOM05D002996 ORTHO05D003536 1.1e-22 110.2 56 85.7
Oeu000903.1 Olea europaea HOM05D002996 ORTHO05D003536 1.1e-22 110.2 56 87.5
Oeu047419.3 Olea europaea HOM05D002996 ORTHO05D003536 1.1e-22 110.2 56 87.5
BcaC09g47743 Brassica carinata HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
A06p26370 Brassica napus HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
BNapus_Darmor_BZH_scaffold_162p00130 Brassica napus HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
BNapus_Darmor_BZH_scaffold_78p00120 Brassica napus HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
BolC1t05834H Brassica oleracea HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
BraA01t04583Z Brassica rapa HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
Carub.0003s0254 Capsella rubella HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
Dinv19011 Davidia involucrata HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
Manes.01G115900 Manihot esculenta HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
Potri.017G128300 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
Sabra17G0107000 Salix brachista HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
Sp3g02390 Schrenkiella parvula HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
Solyc02g091410.3 Solanum lycopersicum HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
Sopen02g036030 Solanum pennellii HOM05D002996 ORTHO05D003536 1.4e-22 109.8 56 85.7
CARHR077410 Cardamine hirsuta HOM05D002996 ORTHO05D003536 1.8e-22 109.4 56 83.9
Thhalv10019951m.g Eutrema salsugineum HOM05D002996 ORTHO05D003536 1.8e-22 109.4 56 85.7
Lsat_1_v5_gn_4_154680 Lactuca sativa HOM05D002996 ORTHO05D003536 1.8e-22 109.4 56 87.5
Nn4g24147 Nelumbo nucifera HOM05D002996 ORTHO05D003536 1.8e-22 109.4 56 87.5
Peaxi162Scf00118g00223 Petunia axillaris HOM05D002996 ORTHO05D003536 1.8e-22 109.4 56 85.7
Rhsim10G0079400 Rhododendron simsii HOM05D002996 ORTHO05D003536 1.8e-22 109.4 56 83.9
EL10Ac2g04480 Beta vulgaris HOM05D002996 ORTHO05D003536 2.4e-22 109.0 56 85.7
ECA238G4747 Erigeron canadensis HOM05D002996 ORTHO05D003536 2.4e-22 109.0 56 85.7
MBI16_g14302_MAGBIO Magnolia biondii HOM05D002996 ORTHO05D003536 2.4e-22 109.0 56 85.7
Medtr3g067690 Medicago truncatula HOM05D002996 ORTHO05D003536 2.4e-22 109.0 56 83.9
Sc10g0000820 Simmondsia chinensis HOM05D002996 ORTHO05D003536 2.4e-22 109.0 56 85.7
SGA_v2.0_scaffold13G06389 Striga asiatica HOM05D002996 ORTHO05D003536 2.4e-22 109.0 56 85.7
TWI74G1665 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 2.4e-22 109.0 56 85.7
vmacro05503 Vaccinium macrocarpon HOM05D002996 ORTHO05D004756 2.4e-22 109.0 57 82.5
Zm00001eb125510 Zea mays HOM05D002996 ORTHO05D003536 2.4e-22 109.0 66 74.2
AL3G13060 Arabidopsis lyrata HOM05D002996 ORTHO05D003536 3.2e-22 108.6 56 83.9
Cc07_g08150 Coffea canephora HOM05D002996 ORTHO05D003536 3.2e-22 108.6 56 85.7
Nitab4.5_0003360g0070 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.2e-22 108.6 56 85.7
Nitab4.5_0004399g0040 Nicotiana tabacum HOM05D002996 ORTHO05D003536 3.2e-22 108.6 56 85.7
PSO339G5742 Papaver somniferum HOM05D002996 ORTHO05D003536 3.2e-22 108.6 56 87.5
PSO407G0242 Papaver somniferum HOM05D002996 ORTHO05D003536 3.2e-22 108.6 56 87.5
QL11p004079 Quercus lobata HOM05D002996 ORTHO05D003536 3.2e-22 108.6 56 83.9
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 3.2e-22 108.6 62 77.4
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 3.2e-22 108.6 62 77.4
Eucgr.F02825 Eucalyptus grandis HOM05D002996 ORTHO05D003536 4.1e-22 108.2 56 85.7
MD17G1256700 Malus domestica HOM05D002996 ORTHO05D003536 4.1e-22 108.2 56 87.5
PSO170G1396 Papaver somniferum HOM05D002996 ORTHO05D003536 4.1e-22 108.2 56 87.5
THA.LOC104827237 Tarenaya hassleriana HOM05D002996 ORTHO05D003536 4.1e-22 108.2 56 85.7
Haze_14227 Corylus avellana HOM05D002996 ORTHO05D003536 5.4e-22 107.8 56 85.7
Rhsim10G0079500 Rhododendron simsii HOM05D002996 ORTHO05D003536 5.4e-22 107.8 56 83.9
BcaC05g30278 Brassica carinata HOM05D002996 ORTHO05D003536 7.0e-22 107.5 56 83.9
BcaC05g30533 Brassica carinata HOM05D002996 ORTHO05D003536 7.0e-22 107.5 56 83.9
C05p63430 Brassica napus HOM05D002996 ORTHO05D003536 7.0e-22 107.5 56 83.9
BolC5t35007H Brassica oleracea HOM05D002996 ORTHO05D003536 7.0e-22 107.5 56 83.9
BraA05t23122Z Brassica rapa HOM05D002996 ORTHO05D003536 7.0e-22 107.5 56 83.9
CANSAT78G2389 Cannabis sativa HOM05D002996 ORTHO05D003536 7.0e-22 107.5 56 85.7
Glyma.18G039000 Glycine max HOM05D002996 ORTHO05D003536 7.0e-22 107.5 56 82.1
Sed0026936 Sechium edule HOM05D002996 ORTHO05D003536 7.0e-22 107.5 56 83.9
VMungo1383G2581 Vigna mungo HOM05D002996 ORTHO05D003536 7.0e-22 107.5 56 82.1
Aa31LG5G13900 Aethionema arabicum HOM05D002996 ORTHO05D003536 9.2e-22 107.1 56 83.9
CAN.G11.11 Capsicum annuum HOM05D002996 ORTHO05D003536 9.2e-22 107.1 56 85.7
CDE10G1224 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 9.2e-22 107.1 56 82.1
ClCG05G010970 Citrullus lanatus HOM05D002996 ORTHO05D003536 9.2e-22 107.1 56 83.9
CsaV3_3G021610 Cucumis sativus L. HOM05D002996 ORTHO05D003536 9.2e-22 107.1 56 83.9
FAN08G1319 Fragaria x ananassa HOM05D002996 ORTHO05D003536 9.2e-22 107.1 56 83.9
Manes.02G074800 Manihot esculenta HOM05D002996 ORTHO05D003536 9.2e-22 107.1 56 82.1
Medtr3g067695 Medicago truncatula HOM05D002996 ORTHO05D003536 9.2e-22 107.1 56 83.9
PGR004G1736 Punica granatum HOM05D002996 ORTHO05D003536 9.2e-22 107.1 56 82.1
RcHm_v2.0_Chr7g0220101 Rosa chinensis HOM05D002996 ORTHO05D003536 9.2e-22 107.1 56 83.9
TWI77G0049 Tripterygium wilfordii HOM05D002996 ORTHO05D003536 9.2e-22 107.1 56 82.1
vmacro05508 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 9.2e-22 107.1 70 68.6
ATR0053G010 Amborella trichopoda HOM05D002996 ORTHO05D003536 1.2e-21 106.7 56 83.9
AT3G03380 Arabidopsis thaliana HOM05D002996 ORTHO05D003536 1.2e-21 106.7 56 82.1
A05p43840 Brassica napus HOM05D002996 ORTHO05D003536 1.2e-21 106.7 56 83.9
Ca_08163_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 1.2e-21 106.7 56 80.4
Ca_17109_v3 Cicer arietinum L. HOM05D002996 ORTHO05D003536 1.2e-21 106.7 56 80.4
Lj6g0006116 Lotus japonicus HOM05D002996 ORTHO05D003536 1.2e-21 106.7 56 80.4
TAR374G0579 Trochodendron aralioides HOM05D002996 ORTHO05D003536 1.2e-21 106.7 56 85.7
arahy.Tifrunner.gnm1.ann1.GD0F1M Arachis hypogaea HOM05D002996 ORTHO05D003536 1.6e-21 106.3 56 80.4
arahy.Tifrunner.gnm1.ann1.RDL55E Arachis hypogaea HOM05D002996 ORTHO05D003536 1.6e-21 106.3 56 80.4
FvH4_5g27890 Fragaria vesca HOM05D002996 ORTHO05D003536 1.6e-21 106.3 56 83.9
FAN18G1791 Fragaria x ananassa HOM05D002996 ORTHO05D003536 1.6e-21 106.3 56 83.9
Lalb_Chr15g0084771 Lupinus albus HOM05D002996 ORTHO05D003536 1.6e-21 106.3 56 80.4
Phvul.001G231700 Phaseolus vulgaris HOM05D002996 ORTHO05D003536 1.6e-21 106.3 56 80.4
SalBow1G7030 Salvia bowleyana HOM05D002996 ORTHO05D003536 1.6e-21 106.3 56 85.7
Hund16206 Selenicereus undatus HOM05D002996 ORTHO05D003536 1.6e-21 106.3 56 82.1
CDE10G0501 Ceratophyllum demersum HOM05D002996 ORTHO05D003536 2.0e-21 105.9 56 80.4
MELO3C020288.2 Cucumis melo HOM05D002996 ORTHO05D003536 2.0e-21 105.9 56 82.1
Migut.H00264 Erythranthe guttata HOM05D002996 ORTHO05D003536 2.0e-21 105.9 56 82.1
Manes.01G116000 Manihot esculenta HOM05D002996 ORTHO05D003536 2.0e-21 105.9 56 80.4
MSTRG.15319 Avicennia marina HOM05D002996 ORTHO05D003536 2.7e-21 105.5 56 83.9
PSO017G4487 Papaver somniferum HOM05D002996 ORTHO05D003536 3.5e-21 105.1 56 83.9
PSO478G4946 Papaver somniferum HOM05D002996 ORTHO05D003536 3.5e-21 105.1 56 83.9
Psat5g122480 Pisum sativum HOM05D002996 ORTHO05D003536 3.5e-21 105.1 56 78.6
Prupe.3G159400 Prunus persica HOM05D002996 ORTHO05D003536 3.5e-21 105.1 56 82.1
Cfa007838 Carpinus fangiana HOM05D002996 ORTHO05D003536 4.6e-21 104.8 56 83.9
AUR62023190 Chenopodium quinoa HOM05D002996 ORTHO05D003536 4.6e-21 104.8 56 80.4
AUR62023237 Chenopodium quinoa HOM05D002996 ORTHO05D003536 4.6e-21 104.8 56 80.4
TPR.G27148 Trifolium pratense HOM05D002996 ORTHO05D003536 4.6e-21 104.8 56 78.6
Ah.16g101290 Amaranthus hybridus HOM05D002996 ORTHO05D003536 5.9e-21 104.4 56 82.1
Glyma.11G218000 Glycine max HOM05D002996 ORTHO05D003536 5.9e-21 104.4 56 80.4
Lsat_1_v5_gn_1_126760 Lactuca sativa HOM05D002996 ORTHO05D004698 5.9e-21 104.4 54 85.2
Atru.chr1.1814 Acer truncatum HOM05D002996 ORTHO05D003536 7.8e-21 104.0 56 83.9
SMO361G0084 Selaginella moellendorffii HOM05D002996 ORTHO05D003536 7.8e-21 104.0 56 78.6
PSO407G0207 Papaver somniferum HOM05D002996 ORTHO05D003536 1.0e-20 103.6 56 82.1
Potri.004G088600 Populus trichocarpa HOM05D002996 ORTHO05D003536 1.0e-20 103.6 56 80.4
Duzib211G0161 Durio zibethinus HOM05D002996 ORTHO05D003536 1.3e-20 103.2 56 82.1
COL.COLO4_15723 Corchorus olitorius HOM05D002996 ORTHO05D003536 1.7e-20 102.8 56 82.1
Gohir.A11G162100 Gossypium hirsutum HOM05D002996 ORTHO05D003536 1.7e-20 102.8 56 80.4
Mapoly0003s0272 Marchantia polymorpha HOM05D002996 ORTHO05D003536 1.7e-20 102.8 56 76.8
Gohir.A08G052700 Gossypium hirsutum HOM05D002996 ORTHO05D003536 3.9e-20 101.7 56 80.4
Gohir.D08G062300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 3.9e-20 101.7 56 80.4
Gorai.004G064500 Gossypium raimondii HOM05D002996 ORTHO05D003536 3.9e-20 101.7 56 80.4
Sabra04G0059000 Salix brachista HOM05D002996 ORTHO05D003536 3.9e-20 101.7 56 78.6
Duzib133G0038 Durio zibethinus HOM05D002996 ORTHO05D003536 8.6e-20 100.5 56 82.1
vmacro05511 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 8.6e-20 100.5 96 55.2
Cpa.g.c28186.1 Carica papaya HOM05D002996 ORTHO05D003536 1.5e-19 99.8 56 82.1
Pp3c1_28480 Physcomitrium patens HOM05D002996 ORTHO05D003536 1.5e-19 99.8 56 78.6
CsaV3_1G027780 Cucumis sativus L. HOM05D002996 ORTHO05D003536 2.5e-19 99.0 50 84.0
Gohir.D11G168300 Gossypium hirsutum HOM05D002996 ORTHO05D003536 2.5e-19 99.0 56 76.8
Gorai.007G179800 Gossypium raimondii HOM05D002996 ORTHO05D003536 2.5e-19 99.0 56 76.8
TPR.G27497 Trifolium pratense HOM05D002996 ORTHO05D003536 4.3e-19 98.2 72 63.9
Thecc.04G120500 Theobroma cacao HOM05D002996 ORTHO05D003536 5.6e-19 97.8 56 78.6
Sabra04G0059100 Salix brachista HOM05D002996 ORTHO05D003536 7.3e-19 97.4 56 75.0
Pp3c2_7790 Physcomitrium patens HOM05D002996 ORTHO05D003536 1.2e-18 96.7 56 75.0
Potri.004G088700 Populus trichocarpa HOM05D002996 ORTHO05D003536 2.8e-18 95.5 56 73.2
SEGI_40820 Sequoiadendron giganteum HOM05D002996 ORTHO05D003536 6.2e-18 94.4 56 73.2
Cre03.g180650 Chlamydomonas reinhardtii HOM05D002996 ORTHO05D003536 2.2e-15 85.9 56 58.9
MCO10G011 Micromonas commoda HOM05D002996 ORTHO05D003536 2.0e-13 79.3 56 60.7
Peaxi162Scf00003g00013 Petunia axillaris HOM05D002996 ORTHO05D003536 4.6e-13 78.2 56 67.9
Cfa025176 Carpinus fangiana HOM05D002996 ORTHO05D003536 1.6e-10 69.7 56 50.0
vmacro18050 Vaccinium macrocarpon HOM05D002996 ORTHO05D003536 1.6e-10 69.7 61 62.3
Nitab4.5_0011266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 3.2e-06 55.5 32 71.9
DCAR_010738 Daucus carota HOM05D002996 ORTHO05D003536 5.4e-06 54.7 25 88.0
Nitab4.5_0008435g0040 Nicotiana tabacum HOM05D002996 ORTHO05D025899 7.1e-06 54.3 45 55.6
Nitab4.5_0026266g0010 Nicotiana tabacum HOM05D002996 ORTHO05D025899 7.1e-06 54.3 45 57.8


User provided reference genes

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