Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0180771 Helianthus annuus HOM05D003094 ORTHO05D003482 1.2e-36 156.0 81 100.0
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 3.3e-29 131.3 72 91.7
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 4.0e-19 97.8 70 71.4
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 5.4e-16 87.4 56 75.0
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 7.3e-13 77.0 73 54.8
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 7.3e-13 77.0 60 61.7
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 2.1e-12 75.5 63 58.7
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 2.3e-11 72.0 66 56.1
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 3.1e-11 71.6 76 48.7
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 5.2e-11 70.9 76 50.0
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 5.2e-11 70.9 65 52.3
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 5.2e-11 70.9 65 52.3
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 5.2e-11 70.9 65 52.3
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 6.8e-11 70.5 63 55.6
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 6.8e-11 70.5 79 50.6
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 1.5e-10 69.3 59 55.9
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.5e-10 69.3 73 52.1
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 2.6e-10 68.6 59 55.9
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 2.6e-10 68.6 69 53.6
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.4e-10 68.2 67 49.3
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.4e-10 68.2 67 49.3
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.4e-10 68.2 67 49.3
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.4e-10 68.2 67 49.3
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.4e-10 68.2 67 49.3
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 4.4e-10 67.8 63 52.4
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 4.4e-10 67.8 58 60.3
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 7.5e-10 67.0 59 54.2
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.5e-10 67.0 59 52.5
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 7.5e-10 67.0 59 52.5
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 7.5e-10 67.0 65 55.4
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 7.5e-10 67.0 63 47.6
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 9.9e-10 66.6 69 50.7
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 1.3e-09 66.2 59 54.2
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 1.3e-09 66.2 77 45.5
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 1.3e-09 66.2 63 49.2
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 1.3e-09 66.2 63 50.8
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 1.7e-09 65.9 63 49.2
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.2e-09 65.5 71 49.3
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 2.2e-09 65.5 76 48.7
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 2.9e-09 65.1 75 44.0
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 2.9e-09 65.1 69 49.3
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 3.7e-09 64.7 78 52.6
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 3.7e-09 64.7 75 50.7
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 4.9e-09 64.3 63 50.8
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 4.9e-09 64.3 83 44.6
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.9e-09 64.3 59 49.2
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 4.9e-09 64.3 79 45.6
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 4.9e-09 64.3 59 52.5
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 6.4e-09 63.9 74 45.9
AUR62029914 Chenopodium quinoa HOM05D003094 ORTHO05D003482 6.4e-09 63.9 45 60.0
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 6.4e-09 63.9 59 50.8
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 8.3e-09 63.5 63 47.6
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 8.3e-09 63.5 73 47.9
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 8.3e-09 63.5 59 50.8
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 8.3e-09 63.5 78 51.3
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 1.1e-08 63.2 69 47.8
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.1e-08 63.2 65 56.9
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 1.1e-08 63.2 45 60.0
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 1.4e-08 62.8 50 56.0
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 1.4e-08 62.8 70 42.9
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 1.4e-08 62.8 65 56.9
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.4e-08 62.8 65 56.9
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 1.9e-08 62.4 63 50.8
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-08 62.4 78 50.0
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.9e-08 62.4 75 46.7
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 2.4e-08 62.0 65 53.8
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 2.4e-08 62.0 47 63.8
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 3.2e-08 61.6 63 47.6
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 3.2e-08 61.6 71 46.5
ECA238G4750 Erigeron canadensis HOM05D003094 ORTHO05D003482 3.2e-08 61.6 64 48.4
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 3.2e-08 61.6 63 47.6
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.1e-08 61.2 64 50.0
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.1e-08 61.2 64 50.0
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 4.1e-08 61.2 49 55.1
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 4.1e-08 61.2 72 48.6
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.1e-08 61.2 59 49.2
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 5.4e-08 60.8 63 49.2
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 5.4e-08 60.8 59 47.5
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 5.4e-08 60.8 59 47.5
Cfa019731 Carpinus fangiana HOM05D003094 ORTHO05D003482 7.1e-08 60.5 83 44.6
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 7.1e-08 60.5 59 47.5
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 7.1e-08 60.5 59 49.2
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 9.2e-08 60.1 74 40.5
AUR62033800 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.2e-07 59.7 45 57.8
Lsat_1_v5_gn_2_64400 Lactuca sativa HOM05D003094 ORTHO05D003482 1.2e-07 59.7 74 44.6
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 1.6e-07 59.3 65 53.8
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 1.6e-07 59.3 82 46.3
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 1.6e-07 59.3 59 47.5
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 1.6e-07 59.3 78 44.9
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 1.6e-07 59.3 63 46.0
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 1.6e-07 59.3 59 47.5
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 2.1e-07 58.9 73 46.6
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 2.1e-07 58.9 70 44.3
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.1e-07 58.9 49 55.1
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 2.1e-07 58.9 70 45.7
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 2.1e-07 58.9 76 43.4
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 2.1e-07 58.9 61 45.9
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 2.7e-07 58.5 63 46.0
Haze_18735 Corylus avellana HOM05D003094 ORTHO05D003482 2.7e-07 58.5 80 42.5
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 2.7e-07 58.5 74 47.3
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 3.5e-07 58.2 67 46.3
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 4.6e-07 57.8 63 44.4
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 6.0e-07 57.4 63 42.9
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 6.0e-07 57.4 73 41.1
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.0e-07 57.4 70 44.3
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 6.0e-07 57.4 59 45.8
Hma1.2p1_1283F.1_g272860 Hydrangea macrophylla HOM05D003094 ORTHO05D003482 7.8e-07 57.0 64 48.4
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 7.8e-07 57.0 60 50.0
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 7.8e-07 57.0 60 50.0
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 7.8e-07 57.0 74 43.2
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 7.8e-07 57.0 74 44.6
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.3e-06 56.2 63 41.3
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.3e-06 56.2 70 44.3
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.3e-06 56.2 71 46.5
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 1.3e-06 56.2 71 46.5
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.3e-06 56.2 71 46.5
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 1.7e-06 55.8 60 45.0
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.7e-06 55.8 70 44.3
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 1.7e-06 55.8 69 43.5
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 2.3e-06 55.5 67 40.3
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.3e-06 55.5 47 55.3
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 3.0e-06 55.1 70 42.9
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 3.0e-06 55.1 70 42.9
TWI60G1358 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 3.0e-06 55.1 64 45.3
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 3.9e-06 54.7 63 39.7
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 3.9e-06 54.7 70 42.9
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 5.1e-06 54.3 63 41.3
SGA_v2.0_scaffold29G12062 Striga asiatica HOM05D003094 ORTHO05D003482 5.1e-06 54.3 59 49.2
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 5.1e-06 54.3 64 43.8
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 5.1e-06 54.3 64 43.8
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 6.6e-06 53.9 64 45.3
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 6.6e-06 53.9 76 38.2
Sabra15G0041200 Salix brachista HOM05D003094 ORTHO05D003482 6.6e-06 53.9 63 44.4
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 8.6e-06 53.5 62 40.3
HanXRQChr14g0446571 Helianthus annuus HOM05D003094 ORTHO05D003482 8.6e-06 53.5 64 43.8


User provided reference genes

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