Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 4.9e-99 364.4 175 100.0
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 1.4e-93 346.3 175 94.3
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 2.4e-93 345.5 175 93.7
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 3.0e-88 328.6 172 88.4
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 3.0e-88 328.6 172 88.4
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 3.9e-88 328.2 172 89.0
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 1.1e-87 326.6 172 89.0
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 2.5e-87 325.5 172 89.0
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 2.5e-87 325.5 172 89.0
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.5e-87 325.5 172 87.8
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 2.5e-87 325.5 175 87.4
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 3.3e-87 325.1 172 89.0
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 3.3e-87 325.1 175 86.9
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 4.3e-87 324.7 175 85.7
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 4.3e-87 324.7 172 87.8
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 4.3e-87 324.7 172 86.6
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 4.3e-87 324.7 172 89.0
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 4.3e-87 324.7 175 85.1
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 5.7e-87 324.3 173 87.3
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 5.7e-87 324.3 171 88.9
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 7.4e-87 323.9 172 86.6
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 7.4e-87 323.9 175 88.0
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 7.4e-87 323.9 172 86.6
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 7.4e-87 323.9 172 87.8
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 9.7e-87 323.6 172 87.8
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 1.6e-86 322.8 175 85.7
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 1.6e-86 322.8 172 88.4
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 2.8e-86 322.0 175 85.7
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.8e-86 322.0 172 86.6
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 2.8e-86 322.0 174 85.6
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 2.8e-86 322.0 172 87.2
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 3.7e-86 321.6 175 85.1
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 3.7e-86 321.6 175 85.1
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 3.7e-86 321.6 172 86.6
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 3.7e-86 321.6 172 86.0
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 3.7e-86 321.6 172 86.0
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 4.8e-86 321.2 175 84.6
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 4.8e-86 321.2 175 85.1
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 4.8e-86 321.2 175 85.1
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 6.3e-86 320.9 172 86.0
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 6.3e-86 320.9 171 87.7
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 6.3e-86 320.9 172 86.6
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 6.3e-86 320.9 172 86.6
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 6.3e-86 320.9 174 85.1
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 8.2e-86 320.5 172 87.2
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 1.1e-85 320.1 175 84.6
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.4e-85 319.7 175 84.6
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 1.4e-85 319.7 172 86.0
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 1.4e-85 319.7 171 87.1
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 1.8e-85 319.3 174 85.1
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 1.8e-85 319.3 174 85.1
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.8e-85 319.3 172 86.6
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 2.4e-85 318.9 171 87.1
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 3.1e-85 318.5 172 86.0
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 4.1e-85 318.2 174 84.5
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 4.1e-85 318.2 172 86.0
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 1.2e-84 316.6 175 84.6
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 1.2e-84 316.6 174 83.9
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 2.0e-84 315.8 174 84.5
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 3.4e-84 315.1 172 85.5
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 5.9e-84 314.3 172 84.9
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 7.7e-84 313.9 172 85.5
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 7.7e-84 313.9 172 85.5
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.0e-83 313.5 175 84.6
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 1.7e-83 312.8 172 84.3
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 2.2e-83 312.4 172 85.5
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.2e-83 312.4 172 85.5
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 2.2e-83 312.4 172 83.7
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 3.8e-83 311.6 172 84.9
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 3.8e-83 311.6 172 83.7
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 5.0e-83 311.2 172 85.5
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 5.0e-83 311.2 172 83.1
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 6.5e-83 310.8 172 83.1
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.1e-82 310.1 173 84.4
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 1.4e-82 309.7 172 84.9
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.9e-82 309.3 172 82.6
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 1.9e-82 309.3 172 83.7
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 2.1e-81 305.8 172 83.7
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 3.6e-81 305.1 172 82.0
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 3.6e-81 305.1 170 85.3
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 6.1e-81 304.3 174 79.9
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 7.9e-81 303.9 171 83.0
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.4e-80 303.1 174 79.3
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 3.9e-80 301.6 187 77.5
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 3.9e-80 301.6 171 80.7
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 5.1e-80 301.2 172 83.7
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 8.8e-80 300.4 172 82.0
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 1.5e-79 299.7 175 79.4
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 1.5e-79 299.7 174 79.9
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 1.5e-79 299.7 174 79.9
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 1.5e-79 299.7 174 79.9
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 1.5e-79 299.7 174 79.9
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 2.0e-79 299.3 176 79.0
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 2.5e-79 298.9 223 67.3
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 1.7e-78 296.2 169 81.1
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 2.2e-78 295.8 174 79.3
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 3.7e-78 295.0 159 86.8
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 8.2e-78 293.9 158 88.0
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 5.9e-76 287.7 178 77.0
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 1.8e-69 266.2 146 84.9
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 9.1e-69 263.8 151 81.5
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.3e-67 260.0 170 67.6
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 2.2e-67 259.2 149 82.6
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 1.1e-66 256.9 172 66.9
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 9.4e-66 253.8 170 67.1
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 1.4e-64 250.0 172 66.9
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 2.3e-64 249.2 133 88.0
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 7.4e-63 244.2 176 64.8
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 1.8e-61 239.6 126 88.1
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 2.4e-61 239.2 133 84.2
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 2.4e-61 239.2 173 68.8
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 2.0e-60 236.1 130 84.6
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 2.6e-60 235.7 136 80.9
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 7.7e-60 234.2 126 85.7
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 7.7e-60 234.2 126 85.7
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 5.0e-59 231.5 128 83.6
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 6.5e-59 231.1 134 82.1
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 1.1e-58 230.3 126 84.1
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 1.9e-58 229.6 130 83.8
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 4.2e-58 228.4 135 80.0
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 7.2e-58 227.6 129 81.4
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 2.0e-55 219.5 130 80.0
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.4e-53 213.4 162 67.3
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 5.9e-52 208.0 147 71.4
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 1.0e-48 197.2 132 70.5
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 5.7e-47 191.4 127 73.2
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 3.1e-45 185.7 126 69.0
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 3.5e-44 182.2 131 70.2
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.2e-37 159.1 90 83.3
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 2.0e-36 156.4 87 86.2
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.7e-36 156.0 89 84.3
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 1.5e-34 150.2 96 72.9
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.9e-34 149.8 103 70.9
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.5e-34 149.4 92 79.3
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 1.2e-33 147.1 88 77.3
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.6e-33 146.7 94 77.7
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.1e-33 146.4 99 76.8
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 3.6e-33 145.6 80 81.2
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.6e-33 145.6 92 75.0
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 2.4e-29 132.9 73 86.3
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 3.2e-29 132.5 99 63.6
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 4.1e-29 132.1 192 37.0
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.0e-27 127.5 80 75.0
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.5e-26 122.9 69 85.5
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 1.8e-24 116.7 67 74.6
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 3.5e-20 102.4 89 59.6
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 8.6e-19 97.8 57 77.2
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 4.9e-14 82.0 39 87.2


User provided reference genes

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