Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 2.3e-23 111.3 53 100.0
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.1e-12 75.9 38 92.1
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 5.3e-12 73.6 38 86.8
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 9.0e-12 72.8 37 89.2
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 1.2e-11 72.4 38 84.2
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.2e-11 72.4 38 84.2
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 2.0e-11 71.6 38 84.2
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.6e-11 71.2 38 84.2
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.6e-11 71.2 38 84.2
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.6e-11 71.2 38 84.2
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.6e-11 71.2 38 84.2
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.6e-11 71.2 38 84.2
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 4.5e-11 70.5 38 81.6
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 4.5e-11 70.5 38 84.2
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 5.8e-11 70.1 38 81.6
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 5.8e-11 70.1 38 78.9
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 7.6e-11 69.7 38 81.6
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 9.9e-11 69.3 48 70.8
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 9.9e-11 69.3 48 70.8
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 9.9e-11 69.3 38 81.6
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 9.9e-11 69.3 38 81.6
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 9.9e-11 69.3 38 81.6
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 9.9e-11 69.3 38 81.6
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.9e-11 69.3 37 83.8
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.3e-10 68.9 38 81.6
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.3e-10 68.9 38 81.6
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.3e-10 68.9 38 81.6
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.7e-10 68.6 38 78.9
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.2e-10 68.2 37 83.8
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 2.2e-10 68.2 38 78.9
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.2e-10 68.2 38 78.9
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.2e-10 68.2 38 78.9
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 2.2e-10 68.2 37 81.1
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 2.2e-10 68.2 38 78.9
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 2.2e-10 68.2 38 78.9
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 2.2e-10 68.2 38 78.9
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 2.2e-10 68.2 38 78.9
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 2.2e-10 68.2 38 78.9
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.9e-10 67.8 38 78.9
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.9e-10 67.8 38 78.9
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 2.9e-10 67.8 37 81.1
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 3.8e-10 67.4 48 68.8
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 3.8e-10 67.4 48 68.8
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.8e-10 67.4 37 81.1
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 3.8e-10 67.4 37 81.1
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 3.8e-10 67.4 38 76.3
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 3.8e-10 67.4 38 76.3
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 4.9e-10 67.0 38 76.3
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 4.9e-10 67.0 48 68.8
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 4.9e-10 67.0 48 68.8
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 4.9e-10 67.0 48 68.8
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 4.9e-10 67.0 38 76.3
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 4.9e-10 67.0 37 81.1
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 6.4e-10 66.6 37 81.1
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 6.4e-10 66.6 37 81.1
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 6.4e-10 66.6 48 68.8
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 6.4e-10 66.6 48 68.8
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 6.4e-10 66.6 48 68.8
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 6.4e-10 66.6 48 68.8
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 6.4e-10 66.6 38 78.9
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 6.4e-10 66.6 38 76.3
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 6.4e-10 66.6 38 76.3
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 6.4e-10 66.6 48 68.8
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 8.4e-10 66.2 37 81.1
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 8.4e-10 66.2 37 81.1
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 8.4e-10 66.2 48 68.8
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 8.4e-10 66.2 37 81.1
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 8.4e-10 66.2 38 76.3
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 8.4e-10 66.2 38 76.3
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 8.4e-10 66.2 37 81.1
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 1.1e-09 65.9 38 76.3
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 1.1e-09 65.9 37 78.4
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 1.4e-09 65.5 37 78.4
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.4e-09 65.5 48 66.7
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 1.4e-09 65.5 38 73.7
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.4e-09 65.5 38 73.7
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.4e-09 65.5 38 73.7
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.9e-09 65.1 38 73.7
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.9e-09 65.1 38 76.3
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.9e-09 65.1 38 76.3
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.9e-09 65.1 37 75.7
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.4e-09 64.7 37 75.7
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 2.4e-09 64.7 37 75.7
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 2.4e-09 64.7 38 73.7
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 2.4e-09 64.7 38 73.7
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 3.2e-09 64.3 38 73.7
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 4.2e-09 63.9 37 75.7
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 5.5e-09 63.5 38 73.7
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 5.5e-09 63.5 38 71.1
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 7.1e-09 63.2 37 70.3
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 7.1e-09 63.2 37 70.3
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 7.1e-09 63.2 39 76.9
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.2e-08 62.4 38 71.1
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 1.6e-08 62.0 38 71.1
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.6e-08 62.0 38 71.1
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.6e-08 62.0 49 67.3
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 2.7e-08 61.2 48 62.5
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 2.7e-08 61.2 33 84.8
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 2.7e-08 61.2 33 84.8
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 2.7e-08 61.2 37 73.0
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.7e-08 61.2 38 71.1
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 3.5e-08 60.8 38 68.4
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 3.5e-08 60.8 38 68.4
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 4.6e-08 60.5 41 73.2
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 6.0e-08 60.1 38 65.8
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 6.0e-08 60.1 37 67.6
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.3e-07 58.9 38 68.4
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.3e-07 58.2 32 81.2
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 3.0e-07 57.8 31 83.9
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 3.0e-07 57.8 31 83.9
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 5.1e-07 57.0 59 54.2
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 6.7e-07 56.6 36 66.7
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 8.7e-07 56.2 36 66.7
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 8.7e-07 56.2 36 66.7
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 1.5e-06 55.5 30 76.7
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.9e-06 55.1 31 77.4
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.9e-06 55.1 46 60.9
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 4.3e-06 53.9 30 76.7
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 4.3e-06 53.9 53 52.8


User provided reference genes

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