Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0180341 Helianthus annuus HOM05D005825 ORTHO05D006483 1.1e-156 556.6 281 100.0
HanXRQChr17g0537731 Helianthus annuus HOM05D005825 ORTHO05D006483 9.2e-148 526.9 280 96.1
HanXRQChr17g0537711 Helianthus annuus HOM05D005825 ORTHO05D006483 1.3e-141 506.5 280 92.1
Lsat_1_v5_gn_8_58680 Lactuca sativa HOM05D005825 ORTHO05D006483 9.9e-126 453.8 288 79.9
vmacro20556 Vaccinium macrocarpon HOM05D005825 ORTHO05D006483 6.5e-117 424.5 284 76.8
Dinv36528 Davidia involucrata HOM05D005825 ORTHO05D006483 2.4e-111 406.0 290 72.4
DCAR_009187 Daucus carota HOM05D005825 ORTHO05D006483 5.3e-111 404.8 285 70.9
Rhsim01G0070600 Rhododendron simsii HOM05D005825 ORTHO05D006483 6.9e-111 404.4 287 73.2
Oeu007499.1 Olea europaea HOM05D005825 ORTHO05D006483 7.6e-110 401.0 295 70.8
Rhsim01G0071200 Rhododendron simsii HOM05D005825 ORTHO05D006483 2.2e-109 399.4 297 69.4
MSTRG.19597 Avicennia marina HOM05D005825 ORTHO05D006483 5.0e-109 398.3 288 72.2
Peaxi162Scf00157g01524 Petunia axillaris HOM05D005825 ORTHO05D006483 2.5e-108 396.0 286 70.3
Migut.B01717 Erythranthe guttata HOM05D005825 ORTHO05D006483 2.1e-107 392.9 291 69.8
SGA_v2.0_scaffold299G47720 Striga asiatica HOM05D005825 ORTHO05D006483 2.1e-107 392.9 285 70.9
SalBow3G4290 Salvia bowleyana HOM05D005825 ORTHO05D006483 3.6e-107 392.1 286 71.3
Glyma.13G167400 Glycine max HOM05D005825 ORTHO05D006483 4.6e-107 391.7 287 69.3
Sopen12g004430 Solanum pennellii HOM05D005825 ORTHO05D006483 6.1e-107 391.3 287 69.3
PGSC0003DMG400002918 Solanum tuberosum HOM05D005825 ORTHO05D006483 6.1e-107 391.3 289 69.2
PGR142G1018 Punica granatum HOM05D005825 ORTHO05D006483 7.9e-107 391.0 290 67.9
Solyc12g009430.2 Solanum lycopersicum HOM05D005825 ORTHO05D006483 7.9e-107 391.0 287 69.3
Hund09127 Selenicereus undatus HOM05D005825 ORTHO05D006483 1.3e-106 390.2 287 70.0
arahy.Tifrunner.gnm1.ann1.9UEQ51 Arachis hypogaea HOM05D005825 ORTHO05D006483 1.8e-106 389.8 290 68.3
CSS0017066 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 5.1e-106 388.3 289 69.2
Ca_21683_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.1e-105 387.1 288 68.8
Lj2C942T8 Lonicera japonica HOM05D005825 ORTHO05D006483 1.5e-105 386.7 313 66.8
arahy.Tifrunner.gnm1.ann1.1NB5KJ Arachis hypogaea HOM05D005825 ORTHO05D006483 2.5e-105 386.0 284 69.4
CAN.G1591.11 Capsicum annuum HOM05D005825 ORTHO05D006483 2.5e-105 386.0 286 69.2
Lalb_Chr12g0197941 Lupinus albus HOM05D005825 ORTHO05D006483 2.5e-105 386.0 284 70.8
Lalb_Chr13g0301881 Lupinus albus HOM05D005825 ORTHO05D006483 4.3e-105 385.2 287 69.3
CSS0027185 Camellia sinensis var. sinensis HOM05D005825 ORTHO05D006483 5.7e-105 384.8 289 68.9
Actinidia40470 Actinidia chinensis HOM05D005825 ORTHO05D006483 7.4e-105 384.4 289 68.2
Cfa003372 Carpinus fangiana HOM05D005825 ORTHO05D006483 7.4e-105 384.4 291 69.8
Cpa.g.sc75.29 Carica papaya HOM05D005825 ORTHO05D006483 4.8e-104 381.7 288 69.4
Gohir.D06G054601 Gossypium hirsutum HOM05D005825 ORTHO05D006483 6.3e-104 381.3 295 69.5
Gorai.010G064100 Gossypium raimondii HOM05D005825 ORTHO05D006483 6.3e-104 381.3 295 69.5
Sc08g0006620 Simmondsia chinensis HOM05D005825 ORTHO05D006483 8.2e-104 380.9 294 67.7
VMungo1215G3451 Vigna mungo HOM05D005825 ORTHO05D006483 8.2e-104 380.9 287 67.2
Phvul.003G164300 Phaseolus vulgaris HOM05D005825 ORTHO05D006483 1.8e-103 379.8 289 67.1
CANSAT11G1244 Cannabis sativa HOM05D005825 ORTHO05D006483 4.1e-103 378.6 289 67.8
Ciclev10008932m.g Citrus clementina HOM05D005825 ORTHO05D006483 5.3e-103 378.3 293 66.9
Nitab4.5_0002658g0050 Nicotiana tabacum HOM05D005825 ORTHO05D006483 5.3e-103 378.3 291 67.0
Psat4g040200 Pisum sativum HOM05D005825 ORTHO05D006483 5.3e-103 378.3 288 67.4
Thecc.09G126400 Theobroma cacao HOM05D005825 ORTHO05D006483 5.3e-103 378.3 295 67.8
EL10Ac8g18654 Beta vulgaris HOM05D005825 ORTHO05D006483 6.9e-103 377.9 289 67.1
Lj2A929T15 Lonicera japonica HOM05D005825 ORTHO05D006483 9.1e-103 377.5 312 65.7
DCAR_017816 Daucus carota HOM05D005825 ORTHO05D006483 2.6e-102 375.9 326 62.6
FAN19G0135 Fragaria x ananassa HOM05D005825 ORTHO05D006483 2.6e-102 375.9 290 68.3
Medtr4g114160 Medicago truncatula HOM05D005825 ORTHO05D006483 2.6e-102 375.9 287 67.6
Nitab4.5_0014105g0010 Nicotiana tabacum HOM05D005825 ORTHO05D006483 2.6e-102 375.9 290 66.9
Duzib168G1077 Durio zibethinus HOM05D005825 ORTHO05D006483 3.4e-102 375.6 295 68.5
Sed0008025 Sechium edule HOM05D005825 ORTHO05D006483 3.4e-102 375.6 289 65.1
FvH4_1g03280 Fragaria vesca HOM05D005825 ORTHO05D006483 4.5e-102 375.2 290 67.9
Eucgr.C01173 Eucalyptus grandis HOM05D005825 ORTHO05D006483 7.7e-102 374.4 295 65.8
arahy.Tifrunner.gnm1.ann1.85XGXJ Arachis hypogaea HOM05D005825 ORTHO05D006483 1.0e-101 374.0 288 66.7
Gohir.A06G056101 Gossypium hirsutum HOM05D005825 ORTHO05D006483 1.0e-101 374.0 297 68.7
FAN26G2420 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.3e-101 373.6 290 67.9
MD02G1032800 Malus domestica HOM05D005825 ORTHO05D006483 1.3e-101 373.6 288 67.4
Aqoxy5G01398 Aquilegia oxysepala HOM05D005825 ORTHO05D006483 1.7e-101 373.2 288 67.4
FAN23G1198 Fragaria x ananassa HOM05D005825 ORTHO05D006483 1.7e-101 373.2 290 67.9
Hma1.2p1_0018F.1_g012420 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 1.7e-101 373.2 283 68.9
Sabra02G0094300 Salix brachista HOM05D005825 ORTHO05D006483 2.9e-101 372.5 285 68.1
TWI34G0282 Tripterygium wilfordii HOM05D005825 ORTHO05D006483 2.9e-101 372.5 293 67.6
Hma1.2p1_2368F.1_g320700 Hydrangea macrophylla HOM05D005825 ORTHO05D006483 3.8e-101 372.1 283 68.6
Nn2g12789 Nelumbo nucifera HOM05D005825 ORTHO05D006483 3.8e-101 372.1 295 66.8
arahy.Tifrunner.gnm1.ann1.R6UVTB Arachis hypogaea HOM05D005825 ORTHO05D006483 5.0e-101 371.7 288 67.4
ClCG11G003030 Citrullus lanatus HOM05D005825 ORTHO05D006483 6.5e-101 371.3 288 65.6
FAN28G2006 Fragaria x ananassa HOM05D005825 ORTHO05D006483 3.2e-100 369.0 286 68.9
MBI16_g24711_MAGBIO Magnolia biondii HOM05D005825 ORTHO05D006483 4.2e-100 368.6 284 65.1
CsaV3_2G002850 Cucumis sativus L. HOM05D005825 ORTHO05D006483 9.4e-100 367.5 288 65.3
THA.LOC104815280 Tarenaya hassleriana HOM05D005825 ORTHO05D006483 9.4e-100 367.5 292 64.4
Lj4g0013357 Lotus japonicus HOM05D005825 ORTHO05D006483 1.2e-99 367.1 290 65.9
unitig_748.g8100 Utricularia gibba HOM05D005825 ORTHO05D006483 3.6e-99 365.5 289 67.1
Atru.chr7.1162 Acer truncatum HOM05D005825 ORTHO05D006483 6.1e-99 364.8 291 67.4
AT2G26680 Arabidopsis thaliana HOM05D005825 ORTHO05D006483 7.9e-99 364.4 285 65.3
Carub.0004s0696 Capsella rubella HOM05D005825 ORTHO05D006483 7.9e-99 364.4 284 65.5
TAR625G0074 Trochodendron aralioides HOM05D005825 ORTHO05D006483 7.9e-99 364.4 288 64.6
MELO3C004508.2 Cucumis melo HOM05D005825 ORTHO05D006483 1.0e-98 364.0 288 64.2
Manes.06G058801 Manihot esculenta HOM05D005825 ORTHO05D006483 1.0e-98 364.0 230 77.0
RcHm_v2.0_Chr2g0088431 Rosa chinensis HOM05D005825 ORTHO05D006483 1.8e-98 363.2 293 66.2
Potri.014G017900 Populus trichocarpa HOM05D005825 ORTHO05D006483 3.0e-98 362.5 284 66.5
CiPaw.03G244100 Carya illinoinensis HOM05D005825 ORTHO05D006483 5.1e-98 361.7 287 65.9
AL4G19680 Arabidopsis lyrata HOM05D005825 ORTHO05D006483 6.7e-98 361.3 285 64.2
Sabra14G0011800 Salix brachista HOM05D005825 ORTHO05D006483 1.1e-97 360.5 285 67.0
Prupe.7G242700 Prunus persica HOM05D005825 ORTHO05D006483 2.0e-97 359.8 289 65.1
Aa31LG5G9110 Aethionema arabicum HOM05D003776 ORTHO05D004459 4.4e-97 358.6 287 63.4
PSO675G5818 Papaver somniferum HOM05D005825 ORTHO05D006483 7.4e-97 357.8 290 63.1
Sp4g09150 Schrenkiella parvula HOM05D005825 ORTHO05D006483 9.7e-97 357.5 288 63.9
AUR62013360 Chenopodium quinoa HOM05D005825 ORTHO05D006483 2.2e-96 356.3 250 70.4
BcaB06g28186 Brassica carinata HOM05D005825 ORTHO05D006483 4.1e-95 352.1 286 63.3
Thhalv10002044m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 5.3e-95 351.7 284 64.1
A04p21320 Brassica napus HOM05D005825 ORTHO05D006483 1.2e-94 350.5 292 62.0
BraA04t17698Z Brassica rapa HOM05D005825 ORTHO05D006483 1.2e-94 350.5 292 62.0
PSO782G3266 Papaver somniferum HOM05D005825 ORTHO05D006483 1.2e-94 350.5 290 62.1
Ah.09g226210 Amaranthus hybridus HOM05D005825 ORTHO05D006483 2.6e-94 349.4 290 63.8
C04p57230 Brassica napus HOM05D005825 ORTHO05D006483 2.2e-93 346.3 296 61.5
BolC4t27250H Brassica oleracea HOM05D005825 ORTHO05D006483 6.5e-93 344.7 292 61.6
Haze_25579 Corylus avellana HOM05D005825 ORTHO05D006483 2.5e-92 342.8 291 64.9
BcaC02g08209 Brassica carinata HOM05D005825 ORTHO05D006483 5.5e-92 341.7 293 61.1
Thhalv10023596m.g Eutrema salsugineum HOM05D005825 ORTHO05D006483 1.8e-90 336.7 284 62.0
HPP92_017605 Vanilla planifolia HOM05D005825 ORTHO05D006483 1.8e-87 326.6 296 59.1
CDE04G1080 Ceratophyllum demersum HOM05D005825 ORTHO05D006483 4.1e-87 325.5 294 58.2
Os03g0566600 Oryza sativa ssp. japonica HOM05D005825 ORTHO05D006483 5.0e-85 318.5 229 65.9
ATR0225G021 Amborella trichopoda HOM05D005825 ORTHO05D006483 3.2e-84 315.8 230 68.3
Zm00001eb043030 Zea mays HOM05D005825 ORTHO05D006483 1.2e-83 313.9 231 64.9
QL10p023454 Quercus lobata HOM05D005825 ORTHO05D006483 4.7e-83 312.0 464 43.1
SHI03392 Sapria himalayana HOM05D005825 ORTHO05D006483 4.7e-83 312.0 350 51.1
AUR62011128 Chenopodium quinoa HOM05D005825 ORTHO05D006483 1.4e-79 300.4 289 57.4
ECA246G2031 Erigeron canadensis HOM05D000004 ORTHO05D000002 7.2e-76 288.1 169 82.8
AagrBONN_evm.TU.Sc2ySwM_344.1792 Anthoceros agrestis HOM05D005825 ORTHO05D006483 2.7e-70 269.6 234 56.4
SMO147G0115 Selaginella moellendorffii HOM05D005825 ORTHO05D006483 5.0e-69 265.4 229 56.3
Potri.002G119800 Populus trichocarpa HOM05D005825 ORTHO05D006483 4.1e-63 245.7 157 76.4
TPR.G10697 Trifolium pratense HOM05D005825 ORTHO05D006483 5.4e-63 245.4 149 83.2
GSVIVG01015529001 Vitis vinifera HOM05D005825 ORTHO05D006483 5.2e-58 228.8 134 83.6
CARHR118580 Cardamine hirsuta HOM05D005825 ORTHO05D006483 2.0e-57 226.9 200 58.0
CiPaw.04G171000 Carya illinoinensis HOM05D005825 ORTHO05D006483 3.4e-57 226.1 142 77.5
Glyma.17G115000 Glycine max HOM05D005825 ORTHO05D006483 7.5e-57 224.9 142 77.5
Cc06_g08520 Coffea canephora HOM05D005825 ORTHO05D006483 1.3e-56 224.2 134 81.3
Ca_13270_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 4.0e-50 202.6 184 57.1
VMungo0647G0470 Vigna mungo HOM05D005825 ORTHO05D006483 1.9e-47 193.7 163 56.4
Ca_14592_v3 Cicer arietinum L. HOM05D005825 ORTHO05D006483 1.0e-45 188.0 186 54.8
Actinidia21988 Actinidia chinensis HOM05D005825 ORTHO05D006483 6.2e-35 152.1 89 84.3
Eucgr.G00617 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.4e-33 146.0 96 77.1
Eucgr.B02426 Eucalyptus grandis HOM05D005825 ORTHO05D006483 4.9e-32 142.5 85 82.4
Eucgr.B02447 Eucalyptus grandis HOM05D005825 ORTHO05D006483 8.4e-32 141.7 85 82.4
CARHR118590 Cardamine hirsuta HOM05D005825 ORTHO05D006483 3.9e-29 132.9 86 73.3
Eucgr.C03225 Eucalyptus grandis HOM05D005825 ORTHO05D006483 5.6e-28 129.0 79 79.7
TAR381G0761 Trochodendron aralioides HOM05D005825 ORTHO05D006483 3.4e-25 119.8 151 45.7
CAN.G204.2 Capsicum annuum HOM05D005825 ORTHO05D006483 1.3e-21 107.8 73 69.9
Eucgr.E01840 Eucalyptus grandis HOM05D005825 ORTHO05D006483 3.9e-21 106.3 85 68.2
SalBow6G2945 Salvia bowleyana HOM05D000060 ORTHO05D000082 9.6e-12 75.1 121 42.1
VMungo0464G1687 Vigna mungo HOM05D005825 ORTHO05D006483 9.6e-12 75.1 55 67.3
Zm00001eb219900 Zea mays HOM05D005825 ORTHO05D006483 4.8e-11 72.8 161 33.5
Cre12.g488550 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.5e-09 67.8 144 34.0
MCO17G084 Micromonas commoda HOM05D051517 ORTHO05D006483 3.4e-09 66.6 140 32.9
Cre09.g386747 Chlamydomonas reinhardtii HOM05D005825 ORTHO05D006483 1.3e-08 64.7 146 34.2
Cre02.g103000 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 1.9e-07 60.8 144 32.6
Cre12.g552600 Chlamydomonas reinhardtii HOM05D024924 ORTHO05D006483 9.3e-07 58.5 144 31.2
vmacro22117 Vaccinium macrocarpon HOM05D003776 ORTHO05D004459 2.1e-06 57.4 56 51.8


User provided reference genes

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