Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0179891 Helianthus annuus HOM05D003627 ORTHO05D004307 6.9e-63 243.8 125 100.0
HanXRQChr05g0142301 Helianthus annuus HOM05D003627 ORTHO05D004307 1.5e-57 226.1 125 92.0
ECA240G2460 Erigeron canadensis HOM05D003627 ORTHO05D004307 9.7e-57 223.4 125 90.4
ECA236G1938 Erigeron canadensis HOM05D003627 ORTHO05D004307 4.1e-55 218.0 125 86.4
HanXRQChr03g0062131 Helianthus annuus HOM05D003627 ORTHO05D004307 3.5e-54 214.9 125 86.4
Lsat_1_v5_gn_7_42641 Lactuca sativa HOM05D003627 ORTHO05D004307 1.9e-52 209.1 125 82.4
Lsat_1_v5_gn_8_57600 Lactuca sativa HOM05D003627 ORTHO05D004307 1.9e-52 209.1 122 85.2
Dinv11613 Davidia involucrata HOM05D003627 ORTHO05D004307 5.3e-47 191.0 122 79.5
Lj7A717G55 Lonicera japonica HOM05D003627 ORTHO05D004307 9.1e-47 190.3 122 77.0
Cpa.g.sc1755.1 Carica papaya HOM05D003627 ORTHO05D004307 1.2e-46 189.9 122 77.0
PSO170G3425 Papaver somniferum HOM05D003627 ORTHO05D004307 2.7e-46 188.7 122 77.9
PSO455G0147 Papaver somniferum HOM05D003627 ORTHO05D004307 2.7e-46 188.7 122 77.9
Thecc.09G148600 Theobroma cacao HOM05D003627 ORTHO05D004307 5.9e-46 187.6 122 76.2
Oeu045199.1 Olea europaea HOM05D003627 ORTHO05D004307 7.7e-46 187.2 122 76.2
GSVIVG01035802001 Vitis vinifera HOM05D003627 ORTHO05D004307 7.7e-46 187.2 120 77.5
Hma1.2p1_0000F.1_g000840 Hydrangea macrophylla HOM05D003627 ORTHO05D004307 1.0e-45 186.8 122 75.4
Eucgr.C01792 Eucalyptus grandis HOM05D003627 ORTHO05D004307 1.3e-45 186.4 122 76.2
Gohir.A13G206900 Gossypium hirsutum HOM05D003627 ORTHO05D004307 1.3e-45 186.4 122 75.4
Gohir.D13G211500 Gossypium hirsutum HOM05D003627 ORTHO05D004307 1.3e-45 186.4 122 75.4
Gorai.013G241600 Gossypium raimondii HOM05D003627 ORTHO05D004307 1.3e-45 186.4 122 75.4
PGR044G1161 Punica granatum HOM05D003627 ORTHO05D004307 1.3e-45 186.4 122 74.6
TAR626G0665 Trochodendron aralioides HOM05D003627 ORTHO05D004307 1.3e-45 186.4 122 77.9
Actinidia15690 Actinidia chinensis HOM05D003627 ORTHO05D004307 1.7e-45 186.0 122 75.4
CSS0039202 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 2.2e-45 185.7 122 75.4
Cfa013184 Carpinus fangiana HOM05D003627 ORTHO05D004307 2.2e-45 185.7 122 76.2
CiPaw.07G220400 Carya illinoinensis HOM05D003627 ORTHO05D004307 2.9e-45 185.3 122 76.2
Manes.16G119000 Manihot esculenta HOM05D003627 ORTHO05D004307 2.9e-45 185.3 122 74.6
Prupe.1G472700 Prunus persica HOM05D003627 ORTHO05D004307 2.9e-45 185.3 122 75.4
PGR044G1771 Punica granatum HOM05D003627 ORTHO05D004307 2.9e-45 185.3 122 74.6
Gohir.A02G112400 Gossypium hirsutum HOM05D003627 ORTHO05D004307 5.0e-45 184.5 122 75.4
Nn2g11929 Nelumbo nucifera HOM05D003627 ORTHO05D004307 5.0e-45 184.5 122 74.6
ClCG05G017090 Citrullus lanatus HOM05D003627 ORTHO05D004307 6.5e-45 184.1 122 73.0
BcaC03g17902 Brassica carinata HOM05D003627 ORTHO05D004307 8.5e-45 183.7 122 74.6
A02p39740 Brassica napus HOM05D003627 ORTHO05D004307 8.5e-45 183.7 122 74.6
C02p59530 Brassica napus HOM05D003627 ORTHO05D004307 8.5e-45 183.7 122 74.6
MD08G1143000 Malus domestica HOM05D003627 ORTHO05D004307 8.5e-45 183.7 122 74.6
Manes.03G017600 Manihot esculenta HOM05D003627 ORTHO05D004307 8.5e-45 183.7 122 73.8
AUR62024869 Chenopodium quinoa HOM05D003627 ORTHO05D004307 1.1e-44 183.3 123 74.8
Lsat_1_v5_gn_5_31481 Lactuca sativa HOM05D003627 ORTHO05D004307 1.1e-44 183.3 122 74.6
RcHm_v2.0_Chr6g0298671 Rosa chinensis HOM05D003627 ORTHO05D004307 1.1e-44 183.3 122 74.6
CSS0004095 Camellia sinensis var. sinensis HOM05D003627 ORTHO05D004307 1.5e-44 183.0 122 75.4
CiPaw.08G013800 Carya illinoinensis HOM05D003627 ORTHO05D004307 1.5e-44 183.0 122 75.4
Sed0003789 Sechium edule HOM05D003627 ORTHO05D004307 1.5e-44 183.0 119 74.8
CDE10G0654 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 1.9e-44 182.6 125 72.8
Duzib168G1482 Durio zibethinus HOM05D003627 ORTHO05D004307 1.9e-44 182.6 122 74.6
CAN.G98.17 Capsicum annuum HOM05D003627 ORTHO05D004307 2.5e-44 182.2 122 74.6
Duzib150G1042 Durio zibethinus HOM05D003627 ORTHO05D004307 2.5e-44 182.2 122 72.1
FAN20G0596 Fragaria x ananassa HOM05D003627 ORTHO05D004307 2.5e-44 182.2 119 74.8
FAN27G2400 Fragaria x ananassa HOM05D003627 ORTHO05D004307 2.5e-44 182.2 119 74.8
MD15G1119900 Malus domestica HOM05D003627 ORTHO05D004307 2.5e-44 182.2 122 73.0
Potri.006G250000 Populus trichocarpa HOM05D003627 ORTHO05D004307 2.5e-44 182.2 122 72.1
Sed0001403 Sechium edule HOM05D003627 ORTHO05D004307 2.5e-44 182.2 122 73.0
Atru.chr7.2370 Acer truncatum HOM05D003627 ORTHO05D004307 3.2e-44 181.8 122 73.8
AT5G25450 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 3.2e-44 181.8 122 73.0
Eucgr.C02813 Eucalyptus grandis HOM05D003627 ORTHO05D004307 3.2e-44 181.8 122 75.4
FvH4_2g29690 Fragaria vesca HOM05D003627 ORTHO05D004307 3.2e-44 181.8 122 73.0
FAN15G2106 Fragaria x ananassa HOM05D003627 ORTHO05D004307 3.2e-44 181.8 122 73.0
FAN24G2732 Fragaria x ananassa HOM05D003627 ORTHO05D004307 3.2e-44 181.8 122 73.0
ATR0737G081 Amborella trichopoda HOM05D003627 ORTHO05D004307 4.2e-44 181.4 122 74.6
Peaxi162Scf00341g00821 Petunia axillaris HOM05D003627 ORTHO05D004307 4.2e-44 181.4 122 75.4
Potri.018G031400 Populus trichocarpa HOM05D003627 ORTHO05D004307 4.2e-44 181.4 122 72.1
Solyc08g067020.4 Solanum lycopersicum HOM05D003627 ORTHO05D004307 4.2e-44 181.4 122 73.8
Sopen08g020960 Solanum pennellii HOM05D003627 ORTHO05D004307 4.2e-44 181.4 116 76.7
COL.COLO4_23986 Corchorus olitorius HOM05D003627 ORTHO05D004307 5.5e-44 181.0 120 76.7
CDE10G0960 Ceratophyllum demersum HOM05D003627 ORTHO05D004307 7.2e-44 180.6 125 72.0
Duzib187G0128 Durio zibethinus HOM05D003627 ORTHO05D004307 7.2e-44 180.6 122 74.6
MBI01_g13086_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 7.2e-44 180.6 122 75.4
Carub.0006s2330 Capsella rubella HOM05D003627 ORTHO05D004307 9.4e-44 180.3 122 73.0
AT4G32470 Arabidopsis thaliana HOM05D003627 ORTHO05D004307 1.2e-43 179.9 122 73.0
Medtr1g011880 Medicago truncatula HOM05D003627 ORTHO05D004307 1.2e-43 179.9 122 71.3
PGSC0003DMG400029087 Solanum tuberosum HOM05D003627 ORTHO05D004307 1.2e-43 179.9 122 73.0
AL6G37230 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 1.6e-43 179.5 122 72.1
A01p05900 Brassica napus HOM05D003627 ORTHO05D004307 1.6e-43 179.5 122 71.3
Cc11_g01730 Coffea canephora HOM05D003627 ORTHO05D004307 2.1e-43 179.1 122 72.1
Thhalv10026575m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 2.1e-43 179.1 122 72.1
BraA01t00557Z Brassica rapa HOM05D003627 ORTHO05D004307 2.7e-43 178.7 122 71.3
Sp7g30260 Schrenkiella parvula HOM05D003627 ORTHO05D004307 2.7e-43 178.7 122 73.8
Thhalv10005137m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 3.6e-43 178.3 122 72.1
Peaxi162Scf00361g00612 Petunia axillaris HOM05D003627 ORTHO05D004307 3.6e-43 178.3 125 68.8
Aqoxy7G02033 Aquilegia oxysepala HOM05D003627 ORTHO05D004307 4.7e-43 177.9 120 73.3
CANSAT78G1909 Cannabis sativa HOM05D003627 ORTHO05D004307 4.7e-43 177.9 122 71.3
Ca_12928_v3 Cicer arietinum L. HOM05D003627 ORTHO05D004307 4.7e-43 177.9 122 69.7
Nitab4.5_0006827g0010 Nicotiana tabacum HOM05D003627 ORTHO05D004307 4.7e-43 177.9 122 73.8
Oeu031576.1 Olea europaea HOM05D003627 ORTHO05D004307 4.7e-43 177.9 122 73.0
Sp4g05010 Schrenkiella parvula HOM05D003627 ORTHO05D004307 6.1e-43 177.6 122 71.3
TPR.G15658 Trifolium pratense HOM05D003627 ORTHO05D004307 6.1e-43 177.6 122 69.7
A08p18170 Brassica napus HOM05D003627 ORTHO05D004307 8.0e-43 177.2 122 72.1
BraA08t33770Z Brassica rapa HOM05D003627 ORTHO05D004307 8.0e-43 177.2 122 72.1
Carub.0007s0811 Capsella rubella HOM05D003627 ORTHO05D004307 8.0e-43 177.2 122 71.3
CARHR115730 Cardamine hirsuta HOM05D003627 ORTHO05D004307 8.0e-43 177.2 122 71.3
CsaV3_3G046570 Cucumis sativus L. HOM05D003627 ORTHO05D004307 8.0e-43 177.2 122 71.3
MSTRG.11762 Avicennia marina HOM05D003627 ORTHO05D004307 1.0e-42 176.8 122 72.1
BolC1t00646H Brassica oleracea HOM05D003627 ORTHO05D004307 1.0e-42 176.8 122 70.5
Sabra18G0032500 Salix brachista HOM05D003627 ORTHO05D004307 1.0e-42 176.8 122 69.7
THA.LOC104803827 Tarenaya hassleriana HOM05D003627 ORTHO05D004307 1.4e-42 176.4 122 71.3
C03p87330 Brassica napus HOM05D003627 ORTHO05D004307 1.8e-42 176.0 122 71.3
Migut.E01481 Erythranthe guttata HOM05D003627 ORTHO05D004307 1.8e-42 176.0 125 73.6
Thhalv10023759m.g Eutrema salsugineum HOM05D003627 ORTHO05D004307 1.8e-42 176.0 122 71.3
Lalb_Chr23g0268801 Lupinus albus HOM05D003627 ORTHO05D004307 1.8e-42 176.0 122 68.9
BcaC01g01021 Brassica carinata HOM05D003627 ORTHO05D004307 2.3e-42 175.6 122 71.3
C01p06520 Brassica napus HOM05D003627 ORTHO05D004307 2.3e-42 175.6 122 69.7
BolC3t21033H Brassica oleracea HOM05D003627 ORTHO05D004307 2.3e-42 175.6 122 71.3
MELO3C003682.2 Cucumis melo HOM05D003627 ORTHO05D004307 2.3e-42 175.6 122 68.9
Lj1g0024003 Lotus japonicus HOM05D003627 ORTHO05D004307 2.3e-42 175.6 122 68.9
BcaC09g52038 Brassica carinata HOM05D003627 ORTHO05D004307 3.0e-42 175.3 122 71.3
Migut.A00309 Erythranthe guttata HOM05D003627 ORTHO05D004307 3.0e-42 175.3 122 73.0
Psat6g030080 Pisum sativum HOM05D003627 ORTHO05D004307 4.0e-42 174.9 122 68.0
Glyma.17G208000 Glycine max HOM05D003627 ORTHO05D004307 5.2e-42 174.5 122 68.9
Lalb_Chr08g0243901 Lupinus albus HOM05D003627 ORTHO05D004307 5.2e-42 174.5 122 67.2
BcaB03g12747 Brassica carinata HOM05D003627 ORTHO05D004307 8.8e-42 173.7 122 70.5
CARHR240390 Cardamine hirsuta HOM05D003627 ORTHO05D004307 8.8e-42 173.7 122 69.7
VMungo0647G0605 Vigna mungo HOM05D003627 ORTHO05D004307 2.0e-41 172.6 122 68.9
MSTRG.13989 Avicennia marina HOM05D003627 ORTHO05D004307 4.4e-41 171.4 122 70.5
Phvul.001G121500 Phaseolus vulgaris HOM05D003627 ORTHO05D004307 7.5e-41 170.6 115 72.2
HPP92_001612 Vanilla planifolia HOM05D003627 ORTHO05D004307 7.5e-41 170.6 125 68.8
AL7G19340 Arabidopsis lyrata HOM05D003627 ORTHO05D004307 3.7e-40 168.3 138 63.8
Zm00001eb094460 Zea mays HOM05D003627 ORTHO05D004307 3.7e-40 168.3 122 69.7
Os07g0205000 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 4.8e-40 167.9 116 71.6
HPP92_000819 Vanilla planifolia HOM05D003627 ORTHO05D004307 6.3e-40 167.5 116 71.6
Zm00001eb212550 Zea mays HOM05D003627 ORTHO05D004307 1.1e-39 166.8 116 71.6
SGA_v2.0_scaffold169G38619 Striga asiatica HOM05D003627 ORTHO05D004307 1.4e-39 166.4 142 63.4
unitig_748.g8200 Utricularia gibba HOM05D003627 ORTHO05D004307 2.4e-39 165.6 118 71.2
TAR636G0318 Trochodendron aralioides HOM05D003627 ORTHO05D004307 5.4e-39 164.5 113 69.9
unitig_32.g10929 Utricularia gibba HOM05D003627 ORTHO05D004307 1.6e-38 162.9 118 68.6
arahy.Tifrunner.gnm1.ann1.J127JW Arachis hypogaea HOM05D003627 ORTHO05D004307 2.0e-38 162.5 158 55.1
Os03g0806900 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 2.0e-38 162.5 115 69.6
Zm00001eb061560 Zea mays HOM05D003627 ORTHO05D004307 2.0e-38 162.5 116 69.8
Glyma.14G126300 Glycine max HOM05D003627 ORTHO05D004307 7.7e-38 160.6 104 74.0
QL02p023157 Quercus lobata HOM05D003627 ORTHO05D004307 2.5e-36 155.6 100 75.0
Actinidia14624 Actinidia chinensis HOM05D003627 ORTHO05D004307 4.2e-36 154.8 101 74.3
Ciclev10009887m.g Citrus clementina HOM05D003627 ORTHO05D004307 4.2e-36 154.8 100 76.0
TAR625G0096 Trochodendron aralioides HOM05D003627 ORTHO05D004307 5.5e-36 154.5 100 77.0
Hund03017 Selenicereus undatus HOM05D003627 ORTHO05D004307 7.2e-36 154.1 101 74.3
Sc06g0000590 Simmondsia chinensis HOM05D003627 ORTHO05D004307 1.2e-35 153.3 101 74.3
HanXRQChr06g0182081 Helianthus annuus HOM05D003627 ORTHO05D004307 2.8e-35 152.1 82 97.6
BraA02t08939Z Brassica rapa HOM05D003627 ORTHO05D004307 3.6e-35 151.8 102 72.5
Nn8g39358 Nelumbo nucifera HOM05D003627 ORTHO05D004307 3.6e-35 151.8 108 70.4
QL02p087302 Quercus lobata HOM05D003627 ORTHO05D004307 4.7e-35 151.4 103 71.8
BolC2t12016H Brassica oleracea HOM05D003627 ORTHO05D004307 1.0e-34 150.2 100 73.0
Gorai.013G110700 Gossypium raimondii HOM05D003627 ORTHO05D004307 1.0e-34 150.2 100 74.0
Actinidia13260 Actinidia chinensis HOM05D003627 ORTHO05D004307 2.3e-34 149.1 99 71.7
Sc09g0008620 Simmondsia chinensis HOM05D003627 ORTHO05D004307 3.0e-34 148.7 94 78.7
Aa31LG2G19380 Aethionema arabicum HOM05D003627 ORTHO05D004307 5.2e-34 147.9 100 73.0
Sabra06G0195600 Salix brachista HOM05D003627 ORTHO05D004307 6.8e-34 147.5 101 69.3
Ah.10g026040 Amaranthus hybridus HOM05D003627 ORTHO05D004307 1.2e-33 146.7 222 41.4
SEGI_30503 Sequoiadendron giganteum HOM05D003627 ORTHO05D004307 1.2e-33 146.7 124 62.1
Dinv30181 Davidia involucrata HOM05D003627 ORTHO05D004307 2.0e-33 146.0 99 70.7
SGA_v2.0_scaffold18G08283 Striga asiatica HOM05D003627 ORTHO05D004307 2.0e-33 146.0 194 45.9
Gohir.D03G071300 Gossypium hirsutum HOM05D003627 ORTHO05D004307 2.6e-33 145.6 100 72.0
DCAR_003029 Daucus carota HOM05D003627 ORTHO05D004307 4.4e-33 144.8 138 57.2
SGA_v2.0_scaffold22G09938 Striga asiatica HOM05D003627 ORTHO05D004307 1.3e-32 143.3 122 62.3
SalBow4G0188 Salvia bowleyana HOM05D003627 ORTHO05D004307 6.3e-32 141.0 101 67.3
TWI32G0136 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 6.3e-32 141.0 122 62.3
TWI34G0954 Tripterygium wilfordii HOM05D003627 ORTHO05D004307 1.8e-31 139.4 122 60.7
arahy.Tifrunner.gnm1.ann1.8QVL0P Arachis hypogaea HOM05D003627 ORTHO05D004307 2.7e-30 135.6 160 49.4
Ah.10g026070 Amaranthus hybridus HOM05D003627 ORTHO05D004307 1.3e-29 133.3 88 71.6
Rhsim02G0194100 Rhododendron simsii HOM05D003627 ORTHO05D004307 8.6e-29 130.6 83 74.7
Haze_21577 Corylus avellana HOM05D003627 ORTHO05D004307 9.5e-28 127.1 83 73.5
vmacro05197 Vaccinium macrocarpon HOM05D003627 ORTHO05D004307 2.8e-27 125.6 88 68.2
AagrBONN_evm.TU.Sc2ySwM_344.1095 Anthoceros agrestis HOM05D003627 ORTHO05D004307 6.1e-27 124.4 114 55.3
SMO169G0058 Selaginella moellendorffii HOM05D003627 ORTHO05D004307 8.0e-27 124.0 110 55.5
Oeu030075.1 Olea europaea HOM05D003627 ORTHO05D004307 1.0e-26 123.6 83 71.1
Gohir.1Z049369 Gossypium hirsutum HOM05D003627 ORTHO05D004307 2.3e-26 122.5 100 64.0
Pp3c6_18020 Physcomitrium patens HOM05D003627 ORTHO05D004307 4.0e-26 121.7 125 51.2
Nitab4.5_0000010g0100 Nicotiana tabacum HOM05D003627 ORTHO05D004307 2.6e-25 119.0 105 55.2
Pp3c25_1520 Physcomitrium patens HOM05D003627 ORTHO05D004307 4.4e-25 118.2 124 49.2
SalBow8G5246 Salvia bowleyana HOM05D003627 ORTHO05D004307 2.9e-24 115.5 83 65.1
SalBow8G5369 Salvia bowleyana HOM05D003627 ORTHO05D004307 2.9e-24 115.5 83 65.1
Mapoly0020s0108 Marchantia polymorpha HOM05D003627 ORTHO05D004307 3.7e-24 115.2 114 52.6
Pp3c10_14460 Physcomitrium patens HOM05D003627 ORTHO05D004307 4.9e-24 114.8 109 52.3
CBR_g8907 Chara braunii HOM05D003627 ORTHO05D004307 6.4e-24 114.4 121 47.9
PRCOL_00006283 Prasinoderma coloniale HOM05D003627 ORTHO05D004307 3.5e-22 108.6 125 49.6
MCO05G573 Micromonas commoda HOM05D003627 ORTHO05D004307 6.0e-22 107.8 122 50.0
MBI04_g38347_MAGBIO Magnolia biondii HOM05D003627 ORTHO05D004307 2.3e-21 105.9 72 72.2
Nn1g01248 Nelumbo nucifera HOM05D001793 ORTHO05D001938 6.6e-21 104.4 101 52.5
Cre06.g262700 Chlamydomonas reinhardtii HOM05D003627 ORTHO05D004307 7.3e-20 100.9 112 47.3
Os08g0246400 Oryza sativa ssp. japonica HOM05D003627 ORTHO05D004307 1.2e-19 100.1 104 51.9
AUR62030679 Chenopodium quinoa HOM05D003627 ORTHO05D004307 2.0e-17 92.8 84 59.5
CAN.G536.8 Capsicum annuum HOM05D003627 ORTHO05D001832 3.7e-16 88.6 63 73.0
SGA_v2.0_scaffold399G50806 Striga asiatica HOM05D005821 ORTHO05D006649 6.0e-14 81.3 84 52.4
CiPaw.03G239400 Carya illinoinensis HOM05D003627 ORTHO05D004307 7.5e-09 64.3 43 65.1
CAN.G538.10 Capsicum annuum HOM05D003627 ORTHO05D000766 2.2e-08 62.8 45 71.1
DCAR_029199 Daucus carota HOM05D003627 ORTHO05D004307 2.2e-08 62.8 39 79.5
Ah.10g026060 Amaranthus hybridus HOM05D003627 ORTHO05D004307 2.9e-08 62.4 39 76.9
PGR044G2108 Punica granatum HOM05D007797 ORTHO05D009741 4.1e-07 58.5 87 42.5
CARHR187770 Cardamine hirsuta HOM05D003627 ORTHO05D004307 2.7e-06 55.8 49 59.2


User provided reference genes

Program Settings