Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.2e-265 918.3 442 100.0
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 6.1e-239 830.5 435 89.9
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 8.9e-238 826.6 435 89.7
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 4.9e-228 794.3 433 85.5
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 1.1e-227 793.1 436 84.4
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.9e-227 792.3 433 85.2
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 5.4e-227 790.8 433 85.0
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.7e-226 788.5 436 84.6
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 2.3e-225 785.4 432 84.0
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 5.1e-225 784.3 435 83.2
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 1.1e-224 783.1 436 83.9
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 1.9e-224 782.3 436 83.3
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 9.5e-224 780.0 436 83.3
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 9.5e-224 780.0 436 84.2
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 2.3e-222 775.4 435 83.0
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 3.1e-222 775.0 436 83.0
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 5.2e-222 774.2 436 81.9
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 1.2e-221 773.1 435 82.3
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 4.4e-221 771.2 434 83.2
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 5.8e-221 770.8 436 82.1
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.2e-220 768.8 450 80.0
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 2.9e-220 768.5 435 81.1
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 2.9e-220 768.5 490 74.9
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 4.9e-220 767.7 430 82.3
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 8.3e-220 766.9 430 81.9
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 8.3e-220 766.9 435 82.1
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 1.4e-219 766.1 430 82.1
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 1.9e-219 765.8 435 81.1
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 1.9e-219 765.8 435 81.1
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.9e-219 765.8 433 82.7
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.4e-219 765.4 432 82.4
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.4e-219 765.4 432 82.4
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 3.2e-219 765.0 435 81.1
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.2e-219 765.0 435 82.1
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 3.2e-219 765.0 433 81.3
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.2e-219 765.0 436 81.0
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 3.2e-219 765.0 428 83.6
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 5.4e-219 764.2 433 81.3
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 7.1e-219 763.8 435 82.1
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 7.1e-219 763.8 436 80.7
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 9.2e-219 763.5 435 81.4
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 1.6e-218 762.7 430 81.6
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 2.1e-218 762.3 435 82.3
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.7e-218 761.9 432 81.0
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 4.6e-218 761.1 435 81.1
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 6.0e-218 760.8 430 81.4
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 1.3e-217 759.6 433 80.8
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 2.3e-217 758.8 433 80.4
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 1.5e-216 756.1 445 79.3
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 1.5e-216 756.1 433 81.3
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 1.5e-216 756.1 433 79.4
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 2.5e-216 755.4 436 79.8
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 7.3e-216 753.8 431 80.7
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 9.5e-216 753.4 436 79.6
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 9.5e-216 753.4 438 80.8
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 4.7e-215 751.1 429 80.0
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 6.2e-215 750.7 431 80.5
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 1.1e-214 750.0 436 78.7
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 1.4e-214 749.6 430 80.0
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.8e-214 749.2 433 79.2
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 2.4e-214 748.8 430 81.2
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 3.1e-214 748.4 430 79.8
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 4.0e-214 748.0 436 78.4
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.0e-214 748.0 433 79.0
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 5.2e-214 747.7 433 81.3
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.5e-213 746.1 431 79.1
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 3.4e-213 745.0 430 79.3
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 3.4e-213 745.0 429 79.5
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 4.4e-213 744.6 433 79.0
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 7.6e-213 743.8 429 79.0
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.3e-212 743.0 433 78.8
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 6.4e-212 740.7 507 71.2
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 6.4e-212 740.7 438 77.9
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 3.2e-211 738.4 435 78.4
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 5.4e-211 737.6 471 74.1
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.4e-211 737.6 445 77.3
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 2.1e-210 735.7 431 78.9
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.3e-209 732.3 522 69.7
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 3.0e-209 731.9 436 77.5
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.5e-208 729.6 433 77.6
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 9.6e-208 726.9 408 84.1
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 8.1e-207 723.8 433 76.7
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.4e-206 723.0 435 76.8
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 4.0e-206 721.5 436 76.8
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 7.6e-205 717.2 414 81.2
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 2.3e-201 705.7 432 76.4
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 3.9e-201 704.9 436 74.3
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 7.3e-200 700.7 390 84.4
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 9.6e-200 700.3 406 81.0
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.3e-199 699.9 432 75.7
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 8.1e-199 697.2 433 75.3
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 2.4e-198 695.7 404 80.0
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 5.8e-197 691.0 400 79.5
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.0e-193 680.2 432 74.3
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 3.3e-192 675.2 435 71.7
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 7.4e-192 674.1 428 73.8
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 6.2e-191 671.0 433 73.4
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 2.6e-189 665.6 440 70.0
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 3.4e-189 665.2 433 71.8
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.6e-186 656.4 427 71.9
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 4.3e-184 648.3 427 70.3
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 5.6e-184 647.9 436 68.3
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 9.0e-182 640.6 436 72.7
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.8e-177 626.3 435 65.5
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 3.0e-177 625.5 339 85.8
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 3.0e-177 625.5 427 68.9
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 2.8e-175 619.0 330 87.0
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 5.9e-173 611.3 341 82.7
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.8e-172 608.6 432 64.8
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 2.3e-169 599.4 356 79.5
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.3e-169 599.4 432 64.6
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 2.5e-168 595.9 339 81.4
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 6.9e-166 587.8 432 63.2
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.5e-164 581.3 434 67.7
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 6.7e-161 571.2 437 61.1
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.1e-160 570.5 437 61.1
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.5e-160 570.1 387 70.3
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.0e-156 557.4 426 59.9
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.0e-156 557.4 439 60.6
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.5e-147 526.9 289 84.1
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 1.7e-143 513.5 336 71.4
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.7e-141 506.1 430 56.3
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.5e-141 505.8 349 67.9
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 3.2e-139 499.2 382 65.7
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 2.9e-132 476.1 432 52.5
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 3.1e-113 412.9 223 87.9
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 1.1e-107 394.4 352 57.4
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 5.8e-104 382.1 235 76.6
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 1.5e-91 340.9 228 70.2
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 6.7e-76 288.9 194 70.6
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 3.4e-72 276.6 157 83.4
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.7e-71 274.2 176 70.5
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 7.9e-69 265.4 145 84.1
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.1e-65 255.0 198 65.7
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 5.7e-59 232.6 134 79.1
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.3e-58 231.5 228 57.0
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.5e-48 198.0 113 77.0
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.7e-47 194.5 107 80.4
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.1e-41 175.3 138 61.6
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.2e-36 156.4 88 84.1
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 1.4e-33 148.3 93 76.3
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 3.5e-32 143.7 204 40.2
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.1e-30 138.7 165 46.1
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 5.5e-30 136.3 82 81.7
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.4e-25 120.9 77 72.7
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 9.4e-22 109.0 80 62.5
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.0e-20 105.5 256 31.6
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 2.3e-20 104.4 57 77.2
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.2e-19 102.1 104 49.0
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 4.4e-19 100.1 63 76.2
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 1.3e-15 88.6 118 43.2
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 5.6e-14 83.2 49 75.5
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 5.6e-14 83.2 96 47.9
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 9.8e-11 72.4 47 70.2
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 8.3e-10 69.3 36 80.6
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 7.0e-09 66.2 69 53.6
MSTRG.22610 Avicennia marina HOM05D000617 ORTHO05D000478 8.6e-07 59.3 248 24.6
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 5.6e-06 56.6 35 68.6


User provided reference genes

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