Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 0.0e+00 1786.5 871 100.0
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 0.0e+00 1483.8 868 83.3
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 0.0e+00 1480.7 871 82.4
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 0.0e+00 1315.1 868 72.9
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 0.0e+00 1296.6 870 73.3
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 0.0e+00 1290.0 870 71.4
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 0.0e+00 1288.1 881 71.5
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 0.0e+00 1283.5 863 72.0
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 0.0e+00 1282.7 870 71.3
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 0.0e+00 1282.3 865 71.1
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 0.0e+00 1279.2 867 71.2
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 0.0e+00 1278.5 867 70.2
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 0.0e+00 1276.9 866 71.2
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 0.0e+00 1276.9 867 71.0
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 0.0e+00 1274.6 871 71.2
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1262.7 865 71.2
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 0.0e+00 1262.7 872 70.4
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 0.0e+00 1261.1 866 69.3
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 0.0e+00 1260.0 865 71.1
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1259.2 864 69.4
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 0.0e+00 1258.4 865 69.8
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 0.0e+00 1255.7 884 69.0
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 0.0e+00 1253.0 871 69.3
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1251.1 865 69.8
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 0.0e+00 1249.6 871 68.3
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 0.0e+00 1249.2 864 69.7
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 0.0e+00 1246.5 864 69.7
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 0.0e+00 1245.7 867 69.2
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 0.0e+00 1245.3 866 68.4
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 0.0e+00 1244.2 865 69.7
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 0.0e+00 1244.2 865 69.0
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 0.0e+00 1239.6 872 69.3
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1235.3 865 68.7
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 0.0e+00 1234.9 865 68.7
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 0.0e+00 1234.9 864 67.8
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 0.0e+00 1233.4 873 68.2
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 0.0e+00 1232.6 866 69.5
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 0.0e+00 1231.5 871 67.5
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1230.7 865 68.4
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 0.0e+00 1229.9 869 68.6
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 0.0e+00 1229.2 874 68.1
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 0.0e+00 1226.8 865 68.2
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1225.3 871 67.0
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 0.0e+00 1223.8 871 67.4
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 0.0e+00 1223.0 870 66.9
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 0.0e+00 1222.2 868 68.2
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 0.0e+00 1222.2 871 66.9
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 0.0e+00 1221.8 873 67.2
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 0.0e+00 1221.5 877 67.0
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 0.0e+00 1221.5 879 67.3
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 0.0e+00 1216.1 872 67.7
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 0.0e+00 1214.9 869 67.8
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 0.0e+00 1214.1 889 66.7
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 0.0e+00 1213.4 864 67.6
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 0.0e+00 1213.0 865 66.6
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 0.0e+00 1212.6 866 67.6
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 0.0e+00 1212.2 865 68.0
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 0.0e+00 1208.4 868 67.5
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1208.4 865 67.6
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 0.0e+00 1207.6 858 67.1
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 0.0e+00 1204.5 865 68.0
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 0.0e+00 1203.7 871 65.8
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 0.0e+00 1202.6 870 66.8
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1201.4 865 66.7
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 0.0e+00 1200.3 872 65.8
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 0.0e+00 1199.9 865 66.6
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 0.0e+00 1196.4 865 67.1
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 0.0e+00 1191.8 868 66.8
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 0.0e+00 1191.4 864 66.1
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 0.0e+00 1189.9 866 66.4
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1186.8 883 65.3
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 0.0e+00 1186.0 828 68.8
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 0.0e+00 1182.9 870 65.3
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 0.0e+00 1178.7 865 66.0
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 0.0e+00 1178.3 875 65.3
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 0.0e+00 1172.5 866 65.9
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1169.1 868 64.9
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1168.3 868 65.3
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 0.0e+00 1167.1 868 64.7
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 0.0e+00 1165.6 868 64.6
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 0.0e+00 1165.2 866 64.9
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1161.7 870 64.5
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 0.0e+00 1160.6 865 65.0
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 0.0e+00 1159.4 866 64.7
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 0.0e+00 1158.3 865 64.6
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 0.0e+00 1157.1 865 64.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 0.0e+00 1152.5 868 63.8
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 0.0e+00 1147.9 864 64.7
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 0.0e+00 1121.7 871 61.8
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 0.0e+00 1101.7 852 62.3
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 1.8e-303 1045.8 694 72.0
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 2.5e-300 1035.4 865 58.3
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 1.2e-299 1033.1 859 60.3
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 3.5e-294 1015.0 744 67.6
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 7.0e-287 990.7 870 55.4
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 7.0e-287 990.7 863 54.7
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 1.7e-285 986.1 692 68.1
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 1.1e-284 983.4 645 72.2
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 8.0e-283 977.2 870 57.7
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 1.5e-281 973.0 869 54.0
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.0e-277 960.3 861 54.6
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 9.7e-204 714.5 768 47.4
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.2e-157 559.3 388 71.4
Zm00001eb401890 Zea mays HOM05D006378 ORTHO05D007959 2.7e-153 547.0 482 57.3
SEGI_03485 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 8.1e-134 482.3 461 52.7
FAN28G1488 Fragaria x ananassa HOM05D006378 ORTHO05D007959 3.0e-112 410.6 362 56.1
CAN.G81.12 Capsicum annuum HOM05D006378 ORTHO05D007959 6.1e-97 359.8 307 59.6
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 6.3e-70 270.0 168 75.6
CAN.G81.10 Capsicum annuum HOM05D006378 ORTHO05D007959 4.1e-69 267.3 204 62.7
Psat7g020000 Pisum sativum HOM05D006378 ORTHO05D007959 3.8e-51 207.6 161 64.6
CDE05G1577 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 4.7e-49 200.7 173 56.6
CAN.G81.11 Capsicum annuum HOM05D006378 ORTHO05D007959 3.9e-43 181.0 197 50.8
CDE05G1890 Ceratophyllum demersum HOM05D006378 ORTHO05D007959 3.7e-38 164.5 216 43.5
Actinidia29932 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.2e-33 149.4 121 61.2
SHI02337 Sapria himalayana HOM05D006378 ORTHO05D007959 9.2e-29 133.3 148 45.9
Actinidia29933 Actinidia chinensis HOM05D006378 ORTHO05D007959 3.5e-28 131.3 85 71.8
RcHm_v2.0_Chr2g0095081 Rosa chinensis HOM05D006378 ORTHO05D007959 1.6e-25 122.5 87 71.3
SHI02335 Sapria himalayana HOM05D006378 ORTHO05D007959 1.4e-24 119.4 90 64.4
RcHm_v2.0_Chr2g0095091 Rosa chinensis HOM05D006378 ORTHO05D007959 1.7e-22 112.5 69 76.8
RcHm_v2.0_Chr2g0095101 Rosa chinensis HOM05D006378 ORTHO05D007959 2.4e-21 108.6 80 66.2
SHI02336 Sapria himalayana HOM05D006378 ORTHO05D007959 1.2e-17 96.3 106 47.2
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.9e-14 84.3 274 25.9
SHI02339 Sapria himalayana HOM05D006378 ORTHO05D007959 5.4e-13 80.9 94 45.7
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 4.6e-12 77.8 311 23.8
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.0e-11 76.6 320 25.6
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 1.7e-11 75.9 322 24.8
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.0e-11 75.1 315 25.4
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 1.1e-10 73.2 308 24.0
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 4.3e-10 71.2 311 24.4
Actinidia29934 Actinidia chinensis HOM05D006378 ORTHO05D007959 1.3e-09 69.7 39 74.4
SHI02338 Sapria himalayana HOM05D006378 ORTHO05D007959 2.1e-09 68.9 64 51.6
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 4.8e-09 67.8 251 23.9
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 6.2e-09 67.4 303 26.7
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 8.1e-09 67.0 298 24.2
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.1e-08 66.6 345 23.5
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.1e-08 66.6 320 26.2
ATR0511G001 Amborella trichopoda HOM05D006378 ORTHO05D007959 1.8e-08 65.9 83 44.6
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.3e-08 64.3 309 23.0
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 9.0e-08 63.5 233 27.9
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 9.0e-08 63.5 162 29.6
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 9.0e-08 63.5 302 26.5
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 2.2e-06 58.9 173 25.4
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.4e-06 57.0 214 22.0


User provided reference genes

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