Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.5e-200 702.6 350 100.0
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 5.0e-167 591.3 350 83.7
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 1.9e-166 589.3 348 84.8
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 3.3e-163 578.6 351 81.8
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 6.9e-161 570.9 350 80.9
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 2.4e-153 545.8 337 80.1
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 5.9e-152 541.2 346 79.2
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 1.5e-150 536.6 348 75.6
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.8e-148 529.6 344 77.0
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 1.5e-147 526.6 346 75.7
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 5.7e-147 524.6 343 76.1
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 7.5e-147 524.2 344 76.5
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 9.7e-147 523.9 344 76.5
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.7e-146 523.1 340 78.8
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 5.3e-145 518.1 342 76.0
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.0e-144 516.2 342 75.7
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 4.5e-144 515.0 339 74.9
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 4.5e-144 515.0 338 74.9
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 5.9e-144 514.6 343 75.2
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 5.9e-144 514.6 342 75.4
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 7.7e-144 514.2 344 74.7
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 1.0e-143 513.8 339 75.8
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 1.3e-143 513.5 344 75.0
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.7e-143 513.1 344 74.1
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 1.7e-143 513.1 349 73.6
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 2.2e-143 512.7 344 74.4
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 3.8e-143 511.9 338 74.0
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 1.1e-142 510.4 338 74.0
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 1.5e-142 510.0 338 74.0
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 1.5e-142 510.0 338 74.0
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 1.5e-142 510.0 338 74.0
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 2.5e-142 509.2 346 73.7
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 3.2e-142 508.8 341 73.6
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 4.2e-142 508.4 339 74.9
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 4.2e-142 508.4 338 73.7
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 4.2e-142 508.4 338 73.7
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 5.5e-142 508.1 341 73.3
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 5.5e-142 508.1 339 76.1
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 5.5e-142 508.1 343 73.5
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 7.2e-142 507.7 345 75.4
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 3.6e-141 505.4 349 73.1
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 3.6e-141 505.4 341 73.6
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 4.7e-141 505.0 339 74.6
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 6.1e-141 504.6 334 74.6
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 8.0e-141 504.2 339 73.5
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 8.0e-141 504.2 341 74.2
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 1.0e-140 503.8 341 74.8
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 1.8e-140 503.1 334 74.3
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.3e-140 502.7 336 74.4
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 2.3e-140 502.7 346 72.8
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 3.0e-140 502.3 336 74.7
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 4.0e-140 501.9 336 74.4
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 6.8e-140 501.1 342 74.0
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 8.8e-140 500.7 349 74.2
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 1.5e-139 500.0 336 74.1
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 1.5e-139 500.0 339 74.0
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.6e-139 499.2 335 75.2
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 2.6e-139 499.2 339 72.9
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 7.5e-139 497.7 373 67.8
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 7.5e-139 497.7 347 73.5
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 1.7e-138 496.5 344 73.3
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 1.7e-138 496.5 336 74.7
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 4.8e-138 495.0 342 72.2
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 8.3e-138 494.2 339 72.0
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 1.1e-137 493.8 339 72.0
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 4.1e-137 491.9 339 73.7
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 7.0e-137 491.1 342 72.8
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 2.7e-136 489.2 341 71.3
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.7e-136 489.2 342 73.4
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 7.7e-136 487.6 343 69.7
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 7.7e-136 487.6 341 72.1
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 1.3e-135 486.9 339 71.7
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 1.7e-135 486.5 343 72.0
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 2.3e-135 486.1 343 71.4
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 5.0e-135 485.0 341 71.0
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 6.5e-135 484.6 339 72.3
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 1.5e-134 483.4 368 68.2
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 4.2e-134 481.9 338 71.6
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 4.2e-134 481.9 339 71.7
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 9.5e-134 480.7 344 70.9
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 9.5e-134 480.7 340 71.5
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.2e-133 480.3 344 72.1
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 2.3e-132 476.1 339 71.7
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 1.5e-131 473.4 358 67.6
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 3.1e-129 465.7 329 73.6
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 5.4e-129 464.9 318 74.5
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 7.0e-129 464.5 365 67.4
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 2.3e-127 459.5 341 66.9
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 3.8e-127 458.8 383 64.0
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 5.6e-126 454.9 341 69.8
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.4e-124 450.3 293 74.1
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 4.4e-123 445.3 325 68.9
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 8.3e-122 441.0 307 74.3
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 3.2e-121 439.1 363 64.5
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 7.0e-121 438.0 307 73.6
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 9.2e-121 437.6 311 72.7
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 6.0e-120 434.9 297 75.4
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 1.0e-119 434.1 296 76.0
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 1.3e-119 433.7 328 69.8
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 2.3e-119 433.0 328 70.1
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 1.1e-118 430.6 293 72.4
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 1.5e-118 430.3 273 75.8
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 3.3e-118 429.1 297 74.4
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 1.8e-116 423.3 288 71.9
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 9.8e-115 417.5 246 80.5
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 1.1e-113 414.1 309 67.6
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 3.2e-113 412.5 300 70.7
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 7.0e-113 411.4 246 79.7
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 4.6e-112 408.7 353 62.3
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 6.0e-112 408.3 294 72.4
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 7.8e-112 407.9 297 71.4
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 4.4e-107 392.1 298 67.1
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 3.9e-103 379.0 227 81.5
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 6.6e-103 378.3 277 69.7
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 6.2e-101 371.7 344 57.3
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 3.1e-100 369.4 343 55.1
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 4.4e-99 365.5 343 53.6
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.1e-97 360.9 337 56.7
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 1.9e-97 360.1 249 75.1
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 3.2e-97 359.4 309 63.8
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 1.2e-96 357.5 261 71.6
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 2.3e-95 353.2 335 54.9
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 3.6e-93 345.9 246 74.0
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 3.1e-92 342.8 256 70.7
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 3.4e-91 339.3 388 51.8
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 9.3e-89 331.3 230 75.2
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 2.1e-88 330.1 259 68.3
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 4.8e-85 318.9 267 58.4
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 4.0e-84 315.8 182 82.4
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 4.9e-82 308.9 219 74.0
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 1.6e-77 293.9 256 60.5
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 7.6e-75 285.0 320 47.5
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.7e-74 283.9 228 66.2
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 4.5e-67 259.2 176 74.4
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 5.1e-55 219.2 355 40.8
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 6.7e-55 218.8 197 61.4
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 3.8e-50 203.0 156 67.3
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 1.8e-36 157.5 173 53.2
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 1.0e-31 141.7 90 73.3
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 2.0e-27 127.5 69 81.2
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 4.5e-27 126.3 65 84.6
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 4.5e-27 126.3 65 83.1
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 4.5e-27 126.3 65 84.6
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 1.7e-26 124.4 65 84.6
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 1.1e-25 121.7 62 87.1
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 8.0e-24 115.5 120 56.7
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 2.5e-17 94.0 92 56.5
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 3.9e-10 70.1 43 76.7
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 7.3e-09 65.9 49 71.4
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 1.6e-08 64.7 40 77.5


User provided reference genes

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