Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0175661 Helianthus annuus HOM05D001207 ORTHO05D028302 4.3e-29 130.6 62 100.0
HanXRQChr10g0278341 Helianthus annuus HOM05D001207 ORTHO05D028302 7.0e-24 113.2 56 94.6
HanXRQChr02g0040571 Helianthus annuus HOM05D001207 ORTHO05D007056 1.7e-09 65.5 47 61.7
Lsat_1_v5_gn_1_9700 Lactuca sativa HOM05D001207 ORTHO05D007056 1.7e-09 65.5 46 65.2
Actinidia29405 Actinidia chinensis HOM05D001207 ORTHO05D007056 2.9e-09 64.7 49 61.2
Oeu064083.1 Olea europaea HOM05D001207 ORTHO05D007056 1.4e-08 62.4 47 59.6
Dinv41783 Davidia involucrata HOM05D001207 ORTHO05D007056 1.9e-08 62.0 47 59.6
ECA153G0018 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.9e-08 62.0 46 60.9
Eucgr.F02985 Eucalyptus grandis HOM05D001207 ORTHO05D007056 1.9e-08 62.0 47 59.6
Aqoxy5G02631 Aquilegia oxysepala HOM05D001207 ORTHO05D007056 2.4e-08 61.6 46 60.9
MD08G1217400 Malus domestica HOM05D001207 ORTHO05D007056 2.4e-08 61.6 46 56.5
Aa31LG3G14110 Aethionema arabicum HOM05D001207 ORTHO05D007056 3.2e-08 61.2 56 50.0
MSTRG.25453 Avicennia marina HOM05D001207 ORTHO05D007056 3.2e-08 61.2 47 57.4
MSTRG.1532 Avicennia marina HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 57.4
CSS0028951 Camellia sinensis var. sinensis HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 55.3
CSS0049684 Camellia sinensis var. sinensis HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 55.3
CAN.G1647.6 Capsicum annuum HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 57.4
Cfa012981 Carpinus fangiana HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 55.3
Cc10_g11290 Coffea canephora HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 57.4
Haze_21345 Corylus avellana HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 55.3
Haze_21351 Corylus avellana HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 55.3
Migut.C01276 Erythranthe guttata HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 57.4
Nn5g27424 Nelumbo nucifera HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 57.4
Nitab4.5_0001579g0020 Nicotiana tabacum HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 57.4
PGR042G3019 Punica granatum HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 57.4
RcHm_v2.0_Chr7g0223711 Rosa chinensis HOM05D001207 ORTHO05D007056 4.1e-08 60.8 46 60.9
Solyc06g065270.4 Solanum lycopersicum HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 57.4
Sopen06g023770 Solanum pennellii HOM05D001207 ORTHO05D007056 4.1e-08 60.8 47 57.4
DCAR_014387 Daucus carota HOM05D001207 ORTHO05D007056 5.4e-08 60.5 46 58.7
Hma1.2p1_0342F.1_g130690 Hydrangea macrophylla HOM05D001207 ORTHO05D007056 7.1e-08 60.1 47 57.4
THA.LOC104807203 Tarenaya hassleriana HOM05D001207 ORTHO05D007056 7.1e-08 60.1 47 55.3
vmacro00741 Vaccinium macrocarpon HOM05D001207 ORTHO05D007056 7.1e-08 60.1 47 57.4
GSVIVG01026008001 Vitis vinifera HOM05D001207 ORTHO05D007056 7.1e-08 60.1 47 57.4
A06p39520 Brassica napus HOM05D001207 ORTHO05D007056 9.2e-08 59.7 47 55.3
C07p38750 Brassica napus HOM05D001207 ORTHO05D007056 9.2e-08 59.7 47 55.3
C09p04490 Brassica napus HOM05D001207 ORTHO05D007056 9.2e-08 59.7 47 57.4
BolC7t44394H Brassica oleracea HOM05D001207 ORTHO05D007056 9.2e-08 59.7 47 55.3
BraA06t26867Z Brassica rapa HOM05D001207 ORTHO05D007056 9.2e-08 59.7 47 55.3
CANSAT25G2196 Cannabis sativa HOM05D001207 ORTHO05D007056 9.2e-08 59.7 47 55.3
Peaxi162Scf00391g00320 Petunia axillaris HOM05D001207 ORTHO05D007056 9.2e-08 59.7 55 49.1
Sp2g18340 Schrenkiella parvula HOM05D001207 ORTHO05D007056 9.2e-08 59.7 47 55.3
TAR628G0728 Trochodendron aralioides HOM05D001207 ORTHO05D007056 9.2e-08 59.7 46 58.7
AL8G19830 Arabidopsis lyrata HOM05D001207 ORTHO05D007056 1.2e-07 59.3 47 55.3
BcaB04g19536 Brassica carinata HOM05D001207 ORTHO05D007056 1.2e-07 59.3 47 55.3
BcaC04g23805 Brassica carinata HOM05D001207 ORTHO05D007056 1.2e-07 59.3 47 55.3
BolC9t53379H Brassica oleracea HOM05D001207 ORTHO05D007056 1.2e-07 59.3 47 55.3
AUR62004586 Chenopodium quinoa HOM05D001207 ORTHO05D007056 1.2e-07 59.3 47 53.2
Thhalv10004711m.g Eutrema salsugineum HOM05D001207 ORTHO05D007056 1.2e-07 59.3 47 55.3
Lj7C286G4 Lonicera japonica HOM05D001207 ORTHO05D007056 1.2e-07 59.3 47 55.3
Manes.02G199500 Manihot esculenta HOM05D001207 ORTHO05D007056 1.2e-07 59.3 47 55.3
QL02p023752 Quercus lobata HOM05D001207 ORTHO05D007056 1.2e-07 59.3 47 53.2
RcHm_v2.0_Chr1g0329011 Rosa chinensis HOM05D001207 ORTHO05D007056 1.2e-07 59.3 46 58.7
RcHm_v2.0_Chr7g0226671 Rosa chinensis HOM05D001207 ORTHO05D007056 1.2e-07 59.3 46 58.7
TWI14G1107 Tripterygium wilfordii HOM05D001207 ORTHO05D007056 1.2e-07 59.3 46 58.7
AT5G47840 Arabidopsis thaliana HOM05D001207 ORTHO05D007056 1.6e-07 58.9 47 55.3
AUR62023533 Chenopodium quinoa HOM05D001207 ORTHO05D007056 1.6e-07 58.9 47 53.2
Ciclev10021337m.g Citrus clementina HOM05D001207 ORTHO05D007056 1.6e-07 58.9 47 51.1
Prupe.1G556600 Prunus persica HOM05D001207 ORTHO05D007056 1.6e-07 58.9 47 55.3
Rhsim11G0052000 Rhododendron simsii HOM05D001207 ORTHO05D007056 1.6e-07 58.9 47 55.3
Hund16768 Selenicereus undatus HOM05D001207 ORTHO05D007056 1.6e-07 58.9 47 55.3
SEGI_07636 Sequoiadendron giganteum HOM05D001207 ORTHO05D007056 1.6e-07 58.9 46 56.5
PGSC0003DMG400013933 Solanum tuberosum HOM05D001207 ORTHO05D007056 1.6e-07 58.9 47 55.3
Aa31LG2G4940 Aethionema arabicum HOM05D001207 ORTHO05D007056 2.1e-07 58.5 47 53.2
A09p04250 Brassica napus HOM05D001207 ORTHO05D007056 2.1e-07 58.5 47 55.3
BraA09t36062Z Brassica rapa HOM05D001207 ORTHO05D007056 2.1e-07 58.5 47 55.3
Sopen11g010480 Solanum pennellii HOM05D001207 ORTHO05D007056 2.1e-07 58.5 47 53.2
Carub.0008s0733 Capsella rubella HOM05D001207 ORTHO05D007056 2.7e-07 58.2 47 53.2
FvH4_5g31400 Fragaria vesca HOM05D001207 ORTHO05D007056 2.7e-07 58.2 46 56.5
FAN18G0437 Fragaria x ananassa HOM05D001207 ORTHO05D007056 2.7e-07 58.2 46 56.5
Sabra19G0089200 Salix brachista HOM05D001207 ORTHO05D007056 2.7e-07 58.2 53 50.9
SEGI_19852 Sequoiadendron giganteum HOM05D001207 ORTHO05D009015 2.7e-07 58.2 46 60.9
CARHR184380 Cardamine hirsuta HOM05D001207 ORTHO05D007056 3.5e-07 57.8 47 53.2
Cpa.g.sc50.8 Carica papaya HOM05D001207 ORTHO05D007056 3.5e-07 57.8 47 55.3
Duzib177G0274 Durio zibethinus HOM05D001207 ORTHO05D007056 3.5e-07 57.8 47 51.1
PSO017G6918 Papaver somniferum HOM05D001207 ORTHO05D007056 3.5e-07 57.8 46 54.3
PSO170G5208 Papaver somniferum HOM05D001207 ORTHO05D007056 3.5e-07 57.8 46 54.3
Potri.013G103400 Populus trichocarpa HOM05D001207 ORTHO05D007056 4.6e-07 57.4 47 55.3
Potri.019G078200 Populus trichocarpa HOM05D001207 ORTHO05D007056 4.6e-07 57.4 47 55.3
Sabra13G0089500 Salix brachista HOM05D001207 ORTHO05D007056 4.6e-07 57.4 47 55.3
HPP92_003741 Vanilla planifolia HOM05D001207 ORTHO05D007056 4.6e-07 57.4 46 56.5
A05p15070 Brassica napus HOM05D001207 ORTHO05D028302 6.0e-07 57.0 47 53.2
A05p15110 Brassica napus HOM05D001207 ORTHO05D028302 6.0e-07 57.0 47 53.2
CiPaw.07G234600 Carya illinoinensis HOM05D001207 ORTHO05D007056 6.0e-07 57.0 46 54.3
CBR_g8394 Chara braunii HOM05D003754 ORTHO05D004530 6.0e-07 57.0 47 57.4
Duzib177G0286 Durio zibethinus HOM05D001207 ORTHO05D007056 6.0e-07 57.0 46 52.2
Rhsim11G0052100 Rhododendron simsii HOM05D001207 ORTHO05D007056 6.0e-07 57.0 47 53.2
PGSC0003DMG400026110 Solanum tuberosum HOM05D001207 ORTHO05D007056 6.0e-07 57.0 47 55.3
Ah.05g178730 Amaranthus hybridus HOM05D001207 ORTHO05D007056 7.8e-07 56.6 47 51.1
MELO3C019938.2 Cucumis melo HOM05D001207 ORTHO05D007056 7.8e-07 56.6 47 53.2
Thhalv10004716m.g Eutrema salsugineum HOM05D001207 ORTHO05D007056 7.8e-07 56.6 47 53.2
VMungo1127G0008 Vigna mungo HOM05D001207 ORTHO05D007056 7.8e-07 56.6 47 53.2
ClCG08G008660 Citrullus lanatus HOM05D001207 ORTHO05D007056 1.0e-06 56.2 47 51.1
CsaV3_6G004680 Cucumis sativus L. HOM05D001207 ORTHO05D007056 1.0e-06 56.2 47 51.1
MBI03_g18681_MAGBIO Magnolia biondii HOM05D001207 ORTHO05D007056 1.0e-06 56.2 46 54.3
Os08g0109300 Oryza sativa ssp. japonica HOM05D001207 ORTHO05D007056 1.0e-06 56.2 46 54.3
Thecc.08G173100 Theobroma cacao HOM05D001207 ORTHO05D007056 1.0e-06 56.2 47 51.1
Zm00001eb260410 Zea mays HOM05D001207 ORTHO05D007056 1.0e-06 56.2 46 54.3
arahy.Tifrunner.gnm1.ann1.G3UT94 Arachis hypogaea HOM05D000747 ORTHO05D031555 1.3e-06 55.8 47 55.3
CDE05G1386 Ceratophyllum demersum HOM05D001207 ORTHO05D007056 1.3e-06 55.8 46 54.3
SMO364G0753 Selaginella moellendorffii HOM05D001207 ORTHO05D007056 1.3e-06 55.8 47 53.2
ATR1136G076 Amborella trichopoda HOM05D001207 ORTHO05D007056 1.7e-06 55.5 46 52.2
EL10Ac1g00150 Beta vulgaris HOM05D001207 ORTHO05D007056 1.7e-06 55.5 47 51.1
Ca_19675_v3 Cicer arietinum L. HOM05D001207 ORTHO05D007056 1.7e-06 55.5 47 51.1
Glyma.09G234300 Glycine max HOM05D001207 ORTHO05D007056 1.7e-06 55.5 47 51.1
FAN08G3308 Fragaria x ananassa HOM05D001207 ORTHO05D007056 2.3e-06 55.1 46 54.3
CBR_g41087 Chara braunii HOM05D001207 ORTHO05D009015 3.0e-06 54.7 47 53.2
MD15G1404700 Malus domestica HOM05D001207 ORTHO05D007056 3.0e-06 54.7 47 51.1
Atru.chr13.2333 Acer truncatum HOM05D001207 ORTHO05D007056 3.9e-06 54.3 47 51.1
CAN.G195.9 Capsicum annuum HOM05D001207 ORTHO05D007056 3.9e-06 54.3 43 58.1
Phvul.011G003000 Phaseolus vulgaris HOM05D001207 ORTHO05D007056 3.9e-06 54.3 47 51.1
Pp3c6_20610 Physcomitrium patens HOM05D001207 ORTHO05D007056 3.9e-06 54.3 47 53.2
Sed0025573 Sechium edule HOM05D001207 ORTHO05D007056 5.1e-06 53.9 47 48.9
AagrBONN_evm.TU.Sc2ySwM_344.1402 Anthoceros agrestis HOM05D001207 ORTHO05D009015 6.6e-06 53.5 47 51.1
Lj3g0019948 Lotus japonicus HOM05D001207 ORTHO05D007056 8.6e-06 53.1 47 48.9
Lalb_Chr01g0000151 Lupinus albus HOM05D001207 ORTHO05D007056 8.6e-06 53.1 39 59.0


User provided reference genes

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