Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 0.0e+00 2257.6 1162 100.0
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1707.6 1155 77.1
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1577.4 1162 71.2
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1352.0 1158 63.4
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1308.1 1148 61.8
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 1285.0 1151 60.4
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1270.8 1146 60.7
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1245.3 1158 59.2
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1223.8 1146 57.8
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1219.9 1146 57.8
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1214.1 1151 57.5
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1209.9 1150 57.4
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1206.0 1159 56.2
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1203.0 1143 57.5
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1198.0 1184 56.4
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1196.8 1153 57.8
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1196.4 1141 57.7
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1195.6 1152 56.7
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1195.3 1161 55.8
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1190.3 1163 57.2
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1189.5 1140 57.1
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1186.8 1176 56.0
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1186.4 1149 56.5
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1185.6 1164 56.4
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1184.5 1146 56.4
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1184.1 1149 57.3
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1180.6 1164 56.8
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1178.3 1146 56.1
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1177.2 1151 55.6
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1176.8 1154 55.9
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1172.9 1146 55.8
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1171.8 1105 59.3
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1167.9 1174 55.5
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1166.4 1146 55.6
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1165.2 1146 55.6
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1163.7 1148 55.7
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1162.5 1155 56.4
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1157.1 1145 55.1
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1156.7 1145 55.0
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1154.4 1144 55.1
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1153.7 1155 55.9
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1151.3 1160 54.8
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1149.4 1138 56.0
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1147.5 1146 55.9
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1146.0 1146 54.3
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1144.8 1149 55.3
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1142.1 1154 55.5
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1140.6 1144 55.4
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1132.5 1140 55.3
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1129.8 1165 55.6
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1129.8 1152 55.0
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1127.5 1150 53.7
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1123.6 1149 54.4
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1122.8 1142 53.9
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1113.2 1140 53.9
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1112.4 1149 52.9
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1112.1 1145 54.2
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1111.3 1148 53.7
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1110.9 1142 54.0
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1110.1 1147 54.0
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1109.4 1162 53.1
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 0.0e+00 1107.0 1170 53.7
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1102.4 1154 55.0
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1102.0 1149 54.1
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 0.0e+00 1102.0 1153 53.5
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 0.0e+00 1096.6 1046 57.5
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 0.0e+00 1087.4 1154 51.6
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 4.6e-310 1068.1 1147 50.5
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 1.0e-309 1067.0 1137 53.6
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 5.1e-309 1064.7 1148 50.3
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 6.6e-309 1064.3 1146 51.8
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 8.7e-309 1063.9 1095 54.5
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 7.3e-308 1060.8 1146 50.2
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 1.8e-306 1056.2 1146 50.1
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 1.8e-306 1056.2 1155 51.3
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 1.9e-303 1046.2 1032 55.2
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 2.4e-303 1045.8 1123 51.7
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 3.3e-300 1035.4 1135 50.6
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 3.7e-299 1031.9 1150 49.4
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 1.4e-298 1030.0 1142 49.9
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 3.1e-298 1028.9 1136 49.9
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 5.3e-298 1028.1 1150 49.7
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 3.4e-297 1025.4 1141 50.6
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 2.9e-296 1022.3 1135 50.0
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 1.9e-295 1019.6 1135 50.0
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 1.6e-294 1016.5 1136 48.2
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 9.0e-290 1000.7 1146 50.1
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 8.7e-285 984.2 1191 47.8
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 1.0e-253 880.9 1134 45.9
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-250 870.5 1178 45.3
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 2.1e-246 856.7 912 52.6
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 8.3e-243 844.7 1158 44.0
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 4.3e-231 805.8 778 56.2
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 9.2e-218 761.5 1150 42.0
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 4.3e-215 752.7 669 60.2
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 4.7e-214 749.2 655 61.2
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 1.7e-211 740.7 659 61.6
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 1.1e-205 721.5 657 58.3
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 6.9e-197 692.2 1215 36.5
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 2.5e-191 673.7 659 56.0
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 5.6e-183 646.0 1230 35.0
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 2.1e-182 644.0 1186 36.3
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.1e-181 641.7 577 60.3
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 1.8e-176 624.4 573 59.5
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 4.3e-167 593.2 616 55.2
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 2.6e-164 583.9 657 49.5
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 4.2e-154 550.1 718 45.4
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.1e-138 498.8 516 53.3
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 7.0e-133 479.6 473 57.3
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 3.1e-125 454.1 486 53.7
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 7.5e-119 433.0 484 53.7
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 8.7e-83 313.2 1600 24.5
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 3.3e-74 284.6 518 36.5
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 6.4e-70 270.4 255 54.1
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 4.6e-68 264.2 738 31.2
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-61 242.3 563 30.9
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 7.1e-61 240.4 552 31.7
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 2.4e-56 225.3 385 43.1
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-47 196.4 626 26.8
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 1.8e-43 182.6 481 28.3
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 6.1e-36 157.5 677 23.9
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 6.1e-36 157.5 677 23.9
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 2.2e-33 149.1 380 32.4
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 4.1e-32 144.8 213 43.2
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-30 139.8 193 39.4
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 7.2e-29 134.0 513 26.7
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-25 123.2 213 38.0
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 2.0e-23 115.9 224 34.4
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 2.9e-22 112.1 254 33.1
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 4.7e-20 104.8 120 47.5
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-17 96.7 153 35.3
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 8.3e-17 94.0 146 34.2
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-16 93.2 150 38.7
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 1.8e-16 92.8 148 39.9
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 1.8e-16 92.8 79 55.7
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 3.5e-15 88.6 87 48.3
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 1.0e-14 87.0 53 73.6
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 1.8e-11 76.3 52 65.4
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 3.0e-11 75.5 115 33.9
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 2.8e-09 68.9 58 56.9
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 1.0e-06 60.5 157 30.6
SHI47080 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-06 60.1 80 41.2


User provided reference genes

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