Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0173941 Helianthus annuus HOM05D005224 ORTHO05D006372 1.2e-45 186.0 86 100.0
ECA246G3542 Erigeron canadensis HOM05D005224 ORTHO05D006372 1.7e-44 182.2 86 97.7
Lsat_1_v5_gn_3_24761 Lactuca sativa HOM05D005224 ORTHO05D006372 3.8e-44 181.0 86 97.7
HanXRQChr17g0538761 Helianthus annuus HOM05D005224 ORTHO05D006372 5.5e-43 177.2 86 97.7
Dinv44366 Davidia involucrata HOM05D005224 ORTHO05D006372 9.1e-38 159.8 78 93.6
Phvul.001G207200 Phaseolus vulgaris HOM05D005224 ORTHO05D006372 1.5e-37 159.1 86 88.4
Hund11874 Selenicereus undatus HOM05D005224 ORTHO05D006372 2.0e-37 158.7 86 87.2
DCAR_027069 Daucus carota HOM05D005224 ORTHO05D006372 3.5e-37 157.9 74 97.3
Dinv29760 Davidia involucrata HOM05D005224 ORTHO05D006372 4.5e-37 157.5 76 94.7
Gohir.A08G075800 Gossypium hirsutum HOM05D005224 ORTHO05D006372 4.5e-37 157.5 85 87.1
Gorai.004G089700 Gossypium raimondii HOM05D005224 ORTHO05D006372 4.5e-37 157.5 85 87.1
Hma1.2p1_1185F.1_g264980 Hydrangea macrophylla HOM05D005224 ORTHO05D006372 5.9e-37 157.1 78 91.0
TAR365G0183 Trochodendron aralioides HOM05D005224 ORTHO05D006372 5.9e-37 157.1 80 90.0
vmacro03691 Vaccinium macrocarpon HOM05D005224 ORTHO05D006372 5.9e-37 157.1 84 88.1
CDE09G0321 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 1.0e-36 156.4 84 85.7
Nn4g25791 Nelumbo nucifera HOM05D005224 ORTHO05D006372 1.0e-36 156.4 84 84.5
Ah.02g128370 Amaranthus hybridus HOM05D005224 ORTHO05D006372 1.3e-36 156.0 86 84.9
EL10Ac3g05917 Beta vulgaris HOM05D005224 ORTHO05D006372 1.3e-36 156.0 86 84.9
Cc04_g11150 Coffea canephora HOM05D005224 ORTHO05D006372 1.3e-36 156.0 86 84.9
Migut.D00213 Erythranthe guttata HOM05D005224 ORTHO05D006372 1.3e-36 156.0 78 89.7
Gohir.D08G085200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 1.3e-36 156.0 85 85.9
Manes.05G062300 Manihot esculenta HOM05D005224 ORTHO05D006372 1.3e-36 156.0 85 85.9
unitig_0.g663 Utricularia gibba HOM05D005224 ORTHO05D006372 1.7e-36 155.6 78 88.5
Ciclev10033216m.g Citrus clementina HOM05D005224 ORTHO05D006372 2.2e-36 155.2 76 93.4
Duzib133G0273 Durio zibethinus HOM05D005224 ORTHO05D006372 2.2e-36 155.2 85 83.5
Eucgr.K03475 Eucalyptus grandis HOM05D005224 ORTHO05D006372 2.2e-36 155.2 76 90.8
GSVIVG01035146001 Vitis vinifera HOM05D005224 ORTHO05D006372 2.2e-36 155.2 82 89.0
Cfa005919 Carpinus fangiana HOM05D005224 ORTHO05D006372 2.9e-36 154.8 85 84.7
Potri.014G129600 Populus trichocarpa HOM05D005224 ORTHO05D006372 2.9e-36 154.8 86 83.7
Thecc.01G299700 Theobroma cacao HOM05D005224 ORTHO05D006372 2.9e-36 154.8 85 83.5
Actinidia24346 Actinidia chinensis HOM05D001413 ORTHO05D001385 3.8e-36 154.5 73 94.5
Aqoxy2G02950 Aquilegia oxysepala HOM05D005224 ORTHO05D006372 3.8e-36 154.5 77 90.9
Haze_04931 Corylus avellana HOM05D005224 ORTHO05D006372 3.8e-36 154.5 85 83.5
ECA240G1836 Erigeron canadensis HOM05D002891 ORTHO05D003369 5.0e-36 154.1 79 93.7
Glyma.03G214500 Glycine max HOM05D005224 ORTHO05D006372 6.5e-36 153.7 86 83.7
Manes.01G218400 Manihot esculenta HOM05D005224 ORTHO05D006372 6.5e-36 153.7 85 84.7
PGR042G0105 Punica granatum HOM05D005224 ORTHO05D006372 6.5e-36 153.7 86 84.9
CSS0034435 Camellia sinensis var. sinensis HOM05D005224 ORTHO05D006372 8.5e-36 153.3 77 90.9
Thhalv10001702m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 8.5e-36 153.3 85 83.5
Thhalv10006347m.g Eutrema salsugineum HOM05D005224 ORTHO05D006372 8.5e-36 153.3 85 83.5
Gohir.A12G130700 Gossypium hirsutum HOM05D005224 ORTHO05D006372 8.5e-36 153.3 85 83.5
Gohir.D12G134600 Gossypium hirsutum HOM05D005224 ORTHO05D006372 8.5e-36 153.3 85 83.5
Gorai.008G145500 Gossypium raimondii HOM05D005224 ORTHO05D006372 8.5e-36 153.3 85 83.5
PSO210G2815 Papaver somniferum HOM05D005224 ORTHO05D006372 8.5e-36 153.3 82 86.6
Sp4g29630 Schrenkiella parvula HOM05D005224 ORTHO05D006372 8.5e-36 153.3 85 83.5
AT2G47690 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.1e-35 152.9 85 82.4
CANSAT25G2283 Cannabis sativa HOM05D005224 ORTHO05D006372 1.1e-35 152.9 77 89.6
Duzib211G0376 Durio zibethinus HOM05D005224 ORTHO05D006372 1.1e-35 152.9 85 83.5
Migut.D02475 Erythranthe guttata HOM05D005224 ORTHO05D006372 1.1e-35 152.9 78 87.2
AT3G62790 Arabidopsis thaliana HOM05D005224 ORTHO05D006372 1.9e-35 152.1 85 82.4
BolC6t38010H Brassica oleracea HOM05D005224 ORTHO05D006372 1.9e-35 152.1 86 81.4
Carub.0005s2944 Capsella rubella HOM05D005224 ORTHO05D006372 1.9e-35 152.1 85 82.4
CDE02G3260 Ceratophyllum demersum HOM05D005224 ORTHO05D006372 1.9e-35 152.1 84 83.3
FvH4_2g25680 Fragaria vesca HOM05D005224 ORTHO05D006372 1.9e-35 152.1 75 92.0
FAN15G2088 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.9e-35 152.1 75 92.0
FAN20G0551 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.9e-35 152.1 75 92.0
FAN27G2170 Fragaria x ananassa HOM05D005224 ORTHO05D006372 1.9e-35 152.1 75 92.0
MD03G1287600 Malus domestica HOM05D005224 ORTHO05D006372 1.9e-35 152.1 78 88.5
PSO832G3231 Papaver somniferum HOM05D005224 ORTHO05D006372 1.9e-35 152.1 82 85.4
Glyma.19G211200 Glycine max HOM05D005224 ORTHO05D006372 2.5e-35 151.8 86 82.6
Gohir.A08G042400 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.5e-35 151.8 85 82.4
Gohir.D08G052200 Gossypium hirsutum HOM05D005224 ORTHO05D006372 2.5e-35 151.8 85 82.4
Gorai.004G052300 Gossypium raimondii HOM05D005224 ORTHO05D006372 2.5e-35 151.8 85 82.4
BcaB02g07318 Brassica carinata HOM05D005224 ORTHO05D006372 3.2e-35 151.4 84 83.3
RcHm_v2.0_Chr6g0293941 Rosa chinensis HOM05D005224 ORTHO05D006372 3.2e-35 151.4 75 90.7
TWI23G0618 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 3.2e-35 151.4 85 82.4
HPP92_017223 Vanilla planifolia HOM05D005224 ORTHO05D006372 3.2e-35 151.4 86 82.6
Aa31LG1G29010 Aethionema arabicum HOM05D005224 ORTHO05D006372 4.2e-35 151.0 81 85.2
BcaC07g40762 Brassica carinata HOM05D005224 ORTHO05D006372 4.2e-35 151.0 85 82.4
BcaC07g42731 Brassica carinata HOM05D005224 ORTHO05D006372 4.2e-35 151.0 85 82.4
A09p54640 Brassica napus HOM05D005224 ORTHO05D006372 4.2e-35 151.0 85 82.4
C08p37540 Brassica napus HOM05D005224 ORTHO05D006372 4.2e-35 151.0 85 82.4
BraA09t40875Z Brassica rapa HOM05D005224 ORTHO05D006372 4.2e-35 151.0 85 82.4
CARHR143080 Cardamine hirsuta HOM05D005224 ORTHO05D006372 4.2e-35 151.0 81 86.4
Lalb_Chr04g0259841 Lupinus albus HOM05D005224 ORTHO05D006372 4.2e-35 151.0 86 83.7
Prupe.8G260800 Prunus persica HOM05D005224 ORTHO05D006372 4.2e-35 151.0 78 87.2
Sp5g00730 Schrenkiella parvula HOM05D005224 ORTHO05D006372 4.2e-35 151.0 85 82.4
A07p26090 Brassica napus HOM05D005224 ORTHO05D006372 5.5e-35 150.6 80 87.5
Cpa.g.sc19.280 Carica papaya HOM05D005224 ORTHO05D006372 5.5e-35 150.6 76 88.2
TWI14G1007 Tripterygium wilfordii HOM05D005224 ORTHO05D006372 5.5e-35 150.6 85 81.2
BcaB02g08753 Brassica carinata HOM05D005224 ORTHO05D006372 7.2e-35 150.2 85 82.4
BcaNung06420 Brassica carinata HOM05D005224 ORTHO05D006372 7.2e-35 150.2 85 82.4
Lalb_Chr15g0078521 Lupinus albus HOM05D005224 ORTHO05D006372 7.2e-35 150.2 86 82.6
Psat3g022120 Pisum sativum HOM05D005224 ORTHO05D006372 7.2e-35 150.2 86 82.6
AL5G45570 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 9.4e-35 149.8 81 85.2
Actinidia32220 Actinidia chinensis HOM05D005224 ORTHO05D006372 1.2e-34 149.4 75 89.3
MBI18_g06871_MAGBIO Magnolia biondii HOM05D005224 ORTHO05D006372 1.2e-34 149.4 86 81.4
PSO210G7006 Papaver somniferum HOM05D005224 ORTHO05D006372 1.2e-34 149.4 84 81.0
BcaC02g12549 Brassica carinata HOM05D005224 ORTHO05D006372 1.6e-34 149.1 85 82.4
C04p00180 Brassica napus HOM05D005224 ORTHO05D006372 1.6e-34 149.1 85 82.4
BolC4t21665H Brassica oleracea HOM05D005224 ORTHO05D006372 1.6e-34 149.1 85 82.4
Potri.002G204800 Populus trichocarpa HOM05D005224 ORTHO05D006372 1.6e-34 149.1 77 85.7
THA.LOC104817499 Tarenaya hassleriana HOM05D005224 ORTHO05D006372 1.6e-34 149.1 85 80.0
Zm00001eb039670 Zea mays HOM05D005224 ORTHO05D006372 1.6e-34 149.1 90 78.9
AL4G47260 Arabidopsis lyrata HOM05D005224 ORTHO05D006372 2.1e-34 148.7 85 81.2
C06p28410 Brassica napus HOM05D005224 ORTHO05D006372 2.1e-34 148.7 80 87.5
Medtr7g108810 Medicago truncatula HOM05D001413 ORTHO05D001385 2.1e-34 148.7 85 81.2
PSO170G2085 Papaver somniferum HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 80.2
TPR.G9599 Trifolium pratense HOM05D005224 ORTHO05D006372 2.1e-34 148.7 86 81.4
BraA05t19024Z Brassica rapa HOM05D005224 ORTHO05D006372 2.7e-34 148.3 73 90.4
ClCG10G010880 Citrullus lanatus HOM05D005224 ORTHO05D006372 2.7e-34 148.3 75 88.0
Sed0018249 Sechium edule HOM05D005224 ORTHO05D006372 2.7e-34 148.3 75 88.0
Sed0019318 Sechium edule HOM05D005224 ORTHO05D006372 2.7e-34 148.3 75 88.0
A05p00270 Brassica napus HOM05D005224 ORTHO05D006372 3.6e-34 147.9 85 81.2
CARHR173060 Cardamine hirsuta HOM05D005224 ORTHO05D006372 3.6e-34 147.9 85 82.4
Carub.0004s3041 Capsella rubella HOM05D005224 ORTHO05D006372 6.1e-34 147.1 81 84.0
Lj1g0012977 Lotus japonicus HOM05D005224 ORTHO05D006372 6.1e-34 147.1 86 80.2
CsaV3_4G000760 Cucumis sativus L. HOM05D005224 ORTHO05D006372 8.0e-34 146.7 75 86.7
arahy.Tifrunner.gnm1.ann1.8KN71Z Arachis hypogaea HOM05D005224 ORTHO05D006372 1.0e-33 146.4 73 90.4
arahy.Tifrunner.gnm1.ann1.EEQ3S4 Arachis hypogaea HOM05D005224 ORTHO05D006372 1.0e-33 146.4 73 90.4
arahy.Tifrunner.gnm1.ann1.U5VDRT Arachis hypogaea HOM05D005224 ORTHO05D006372 1.0e-33 146.4 73 90.4
QL12p028550 Quercus lobata HOM05D005224 ORTHO05D006372 1.0e-33 146.4 85 78.8
ATR0796G245 Amborella trichopoda HOM05D005224 ORTHO05D006372 1.4e-33 146.0 73 90.4
Nitab4.5_0011375g0020 Nicotiana tabacum HOM05D005224 ORTHO05D006372 2.3e-33 145.2 69 92.8
CiPaw.07G108200 Carya illinoinensis HOM05D005224 ORTHO05D006372 3.9e-33 144.4 86 79.1
MELO3C017960.2 Cucumis melo HOM05D005224 ORTHO05D006372 5.2e-33 144.1 75 85.3
Sc25g0004000 Simmondsia chinensis HOM05D005224 ORTHO05D006372 1.5e-32 142.5 106 68.9
Peaxi162Scf00589g00224 Petunia axillaris HOM05D005224 ORTHO05D006372 3.3e-32 141.4 65 95.4
Os08g0556600 Oryza sativa ssp. japonica HOM05D005224 ORTHO05D006372 1.3e-31 139.4 84 75.0
COL.COLO4_23352 Corchorus olitorius HOM05D005224 ORTHO05D006372 1.7e-31 139.0 106 66.0
SalBow3G4056 Salvia bowleyana HOM05D005224 ORTHO05D006372 8.2e-31 136.7 109 63.3
TAR370G0003 Trochodendron aralioides HOM05D005224 ORTHO05D006372 8.2e-31 136.7 63 95.2
Nitab4.5_0000805g0100 Nicotiana tabacum HOM05D005224 ORTHO05D006372 2.4e-30 135.2 61 96.7
Solyc11g005880.2 Solanum lycopersicum HOM05D005224 ORTHO05D006372 3.1e-30 134.8 62 95.2
Sopen11g001830 Solanum pennellii HOM05D005224 ORTHO05D006372 3.1e-30 134.8 62 95.2
PGSC0003DMG400028681 Solanum tuberosum HOM05D005224 ORTHO05D006372 1.2e-29 132.9 61 95.1
CAN.G652.1 Capsicum annuum HOM05D005224 ORTHO05D006372 1.6e-29 132.5 60 95.0
SHI19781 Sapria himalayana HOM05D005224 ORTHO05D006372 1.7e-28 129.0 73 78.1
BcaC08g45239 Brassica carinata HOM05D005224 ORTHO05D006372 6.5e-28 127.1 57 96.5
TAR633G1838 Trochodendron aralioides HOM05D005224 ORTHO05D006372 4.7e-26 120.9 64 87.5
BraA07t30257Z Brassica rapa HOM05D005224 ORTHO05D006372 2.0e-24 115.5 50 98.0
HanXRQChr08g0223921 Helianthus annuus HOM05D005224 ORTHO05D006372 3.3e-24 114.8 50 98.0
Oeu054123.1 Olea europaea HOM05D005224 ORTHO05D006372 3.3e-24 114.8 50 96.0
HanXRQChr09g0263651 Helianthus annuus HOM05D005224 ORTHO05D006372 1.3e-23 112.8 50 96.0
CBR_g52287 Chara braunii HOM05D005224 ORTHO05D006372 2.0e-21 105.5 76 63.2
MD02G1095800 Malus domestica HOM05D005224 ORTHO05D006372 2.0e-21 105.5 49 89.8
Mapoly0155s0025 Marchantia polymorpha HOM05D005224 ORTHO05D006372 2.9e-20 101.7 86 61.6
AagrBONN_evm.TU.Sc2ySwM_344.1353 Anthoceros agrestis HOM05D005224 ORTHO05D006372 1.1e-19 99.8 86 58.1
Pp3c11_13470 Physcomitrium patens HOM05D005224 ORTHO05D006372 7.2e-19 97.1 64 64.1
Pp3c7_20680 Physcomitrium patens HOM05D005224 ORTHO05D006372 7.2e-19 97.1 64 64.1
CiPaw.08G095500 Carya illinoinensis HOM05D005224 ORTHO05D006372 6.1e-18 94.0 61 75.4
MCO16G429 Micromonas commoda HOM05D005224 ORTHO05D006372 3.5e-13 78.2 75 49.3
arahy.Tifrunner.gnm1.ann1.YEW5FF Arachis hypogaea HOM05D005224 ORTHO05D006372 2.2e-07 58.9 29 86.2
AUR62015428 Chenopodium quinoa HOM05D005224 ORTHO05D006372 4.1e-06 54.7 23 91.3


User provided reference genes

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