Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0172651 Helianthus annuus HOM05D002406 ORTHO05D006947 3.9e-99 364.8 179 100.0
HanXRQChr15g0464741 Helianthus annuus HOM05D002406 ORTHO05D006947 7.8e-76 287.3 153 92.8
Lsat_1_v5_gn_9_39580 Lactuca sativa HOM05D002406 ORTHO05D006947 9.0e-64 247.3 152 78.9
Potri.016G138500 Populus trichocarpa HOM05D002406 ORTHO05D006947 2.8e-49 199.1 164 61.6
Dinv25354 Davidia involucrata HOM05D002406 ORTHO05D006947 6.3e-49 198.0 167 59.9
Potri.006G109700 Populus trichocarpa HOM05D002406 ORTHO05D006947 4.1e-48 195.3 163 60.7
Sabra04G0154600 Salix brachista HOM05D002406 ORTHO05D006947 4.1e-48 195.3 164 59.8
CSS0035133 Camellia sinensis var. sinensis HOM05D002406 ORTHO05D006947 2.9e-46 189.1 156 60.9
Manes.09G123000 Manihot esculenta HOM05D002406 ORTHO05D006947 3.8e-46 188.7 163 57.7
FvH4_6g09630 Fragaria vesca HOM05D002406 ORTHO05D006947 6.5e-46 188.0 152 59.9
FAN14G5298 Fragaria x ananassa HOM05D002406 ORTHO05D006947 6.5e-46 188.0 152 59.9
FAN02G0625 Fragaria x ananassa HOM05D002406 ORTHO05D006947 1.9e-45 186.4 152 59.2
FAN05G1918 Fragaria x ananassa HOM05D002406 ORTHO05D006947 1.9e-45 186.4 152 59.2
QL07p031878 Quercus lobata HOM05D002406 ORTHO05D006947 1.9e-45 186.4 162 56.8
RcHm_v2.0_Chr3g0460271 Rosa chinensis HOM05D002406 ORTHO05D006947 2.5e-45 186.0 152 59.9
Actinidia29026 Actinidia chinensis HOM05D002406 ORTHO05D006947 3.2e-45 185.7 167 57.5
Haze_21193 Corylus avellana HOM05D002406 ORTHO05D006947 3.2e-45 185.7 152 57.2
vmacro20380 Vaccinium macrocarpon HOM05D002406 ORTHO05D006947 2.1e-44 183.0 150 60.7
Cfa017013 Carpinus fangiana HOM05D002406 ORTHO05D006947 2.7e-44 182.6 164 53.7
MD12G1190500 Malus domestica HOM05D002406 ORTHO05D006947 2.7e-44 182.6 153 58.8
Lj3A940T64 Lonicera japonica HOM05D002406 ORTHO05D006947 6.1e-44 181.4 152 61.2
Prupe.6G295600 Prunus persica HOM05D002406 ORTHO05D006947 2.3e-43 179.5 154 59.7
COL.COLO4_04756 Corchorus olitorius HOM05D002406 ORTHO05D006947 5.1e-43 178.3 163 54.6
TAR623G1642 Trochodendron aralioides HOM05D002406 ORTHO05D006947 5.1e-43 178.3 166 54.8
Thecc.04G149800 Theobroma cacao HOM05D002406 ORTHO05D006947 8.8e-43 177.6 163 56.4
Nitab4.5_0000381g0140 Nicotiana tabacum HOM05D002406 ORTHO05D006947 1.5e-42 176.8 150 58.0
Aqoxy2G00696 Aquilegia oxysepala HOM05D002406 ORTHO05D006947 2.0e-42 176.4 154 59.7
MD04G1176200 Malus domestica HOM05D002406 ORTHO05D006947 2.0e-42 176.4 152 57.2
Nitab4.5_0009611g0020 Nicotiana tabacum HOM05D002406 ORTHO05D006947 3.3e-42 175.6 150 58.7
Atru.chr8.88 Acer truncatum HOM05D002406 ORTHO05D006947 9.7e-42 174.1 157 57.3
Rhsim05G0231800 Rhododendron simsii HOM05D002406 ORTHO05D006947 9.7e-42 174.1 128 66.4
VMungo1383G0699 Vigna mungo HOM05D002406 ORTHO05D006947 9.7e-42 174.1 161 55.9
Phvul.008G081300 Phaseolus vulgaris HOM05D002406 ORTHO05D006947 2.2e-41 172.9 161 54.7
CiPaw.09G222400 Carya illinoinensis HOM05D002406 ORTHO05D006947 3.7e-41 172.2 144 58.3
Ciclev10013871m.g Citrus clementina HOM05D002406 ORTHO05D006947 3.7e-41 172.2 153 56.2
Nn2g10257 Nelumbo nucifera HOM05D002406 ORTHO05D006947 4.8e-41 171.8 152 59.9
Glyma.18G215500 Glycine max HOM05D002406 ORTHO05D006947 8.2e-41 171.0 152 55.3
TWI53G1769 Tripterygium wilfordii HOM05D002406 ORTHO05D006947 8.2e-41 171.0 152 57.9
Lj1g0014887 Lotus japonicus HOM05D002406 ORTHO05D006947 1.4e-40 170.2 152 56.6
Migut.J00026 Erythranthe guttata HOM05D002406 ORTHO05D006947 1.8e-40 169.9 152 54.6
Peaxi162Scf00146g01123 Petunia axillaris HOM05D002406 ORTHO05D006947 1.8e-40 169.9 133 59.4
Sopen10g035100 Solanum pennellii HOM05D002406 ORTHO05D006947 1.8e-40 169.9 133 60.9
Lj3g0020337 Lotus japonicus HOM05D002406 ORTHO05D006947 2.4e-40 169.5 164 53.0
Solyc10g085680.2 Solanum lycopersicum HOM05D002406 ORTHO05D006947 2.4e-40 169.5 133 60.2
SGA_v2.0_scaffold373G50187 Striga asiatica HOM05D002406 ORTHO05D006947 2.4e-40 169.5 153 57.5
PSO384G1955 Papaver somniferum HOM05D002406 ORTHO05D006947 3.1e-40 169.1 155 55.5
PGSC0003DMG400008404 Solanum tuberosum HOM05D002406 ORTHO05D006947 4.1e-40 168.7 133 60.2
MBI15_g32302_MAGBIO Magnolia biondii HOM05D002406 ORTHO05D006947 6.9e-40 167.9 156 55.1
PSO339G3893 Papaver somniferum HOM05D002406 ORTHO05D006947 9.1e-40 167.5 150 56.7
PGR004G1558 Punica granatum HOM05D002406 ORTHO05D006947 9.1e-40 167.5 142 59.9
Duzib151G0190 Durio zibethinus HOM05D002406 ORTHO05D006947 1.2e-39 167.2 126 64.3
Oeu038183.1 Olea europaea HOM05D002406 ORTHO05D006947 1.5e-39 166.8 153 56.9
HPP92_015598 Vanilla planifolia HOM05D002406 ORTHO05D006947 2.6e-39 166.0 156 53.8
AUR62006432 Chenopodium quinoa HOM05D002406 ORTHO05D006947 3.4e-39 165.6 154 55.2
MSTRG.5486 Avicennia marina HOM05D002406 ORTHO05D006947 4.5e-39 165.2 147 57.1
Hund19751 Selenicereus undatus HOM05D002406 ORTHO05D006947 5.9e-39 164.9 150 58.0
Gohir.A02G002600 Gossypium hirsutum HOM05D002406 ORTHO05D006947 7.7e-39 164.5 141 58.2
EL10Ac7g17121 Beta vulgaris HOM05D002406 ORTHO05D006947 1.0e-38 164.1 154 55.2
Gohir.D02G002900 Gossypium hirsutum HOM05D002406 ORTHO05D006947 5.0e-38 161.8 141 57.4
CAN.G1018.4 Capsicum annuum HOM05D002406 ORTHO05D006947 6.5e-38 161.4 154 53.9
Eucgr.K01293 Eucalyptus grandis HOM05D002406 ORTHO05D006947 1.2e-36 157.1 109 73.4
Gorai.005G003400 Gossypium raimondii HOM05D002406 ORTHO05D006947 1.6e-36 156.8 141 55.3
Phvul.010G058150 Phaseolus vulgaris HOM05D002406 ORTHO05D006947 2.7e-36 156.0 160 50.0
SalBow5G1918 Salvia bowleyana HOM05D002406 ORTHO05D006947 2.7e-36 156.0 140 56.4
SalBow5G3065 Salvia bowleyana HOM05D002406 ORTHO05D006947 2.7e-36 156.0 140 56.4
VMungo0331G0841 Vigna mungo HOM05D002406 ORTHO05D006947 3.6e-36 155.6 160 50.0
MBI15_g39135_MAGBIO Magnolia biondii HOM05D002406 ORTHO05D006947 4.7e-36 155.2 156 53.8
unitig_22.g6614 Utricularia gibba HOM05D002406 ORTHO05D006947 1.0e-35 154.1 149 51.0
Ah.08g209230 Amaranthus hybridus HOM05D002406 ORTHO05D006947 1.4e-35 153.7 154 51.9
CANSAT21G0074 Cannabis sativa HOM05D002406 ORTHO05D006947 1.8e-35 153.3 139 55.4
MELO3C025227.2 Cucumis melo HOM05D002406 ORTHO05D006947 2.3e-35 152.9 150 54.7
Sed0010662 Sechium edule HOM05D002406 ORTHO05D006947 2.3e-35 152.9 150 55.3
THA.LOC104823324 Tarenaya hassleriana HOM05D002406 ORTHO05D006947 3.0e-35 152.5 134 60.4
CsaV3_4G027240 Cucumis sativus L. HOM05D002406 ORTHO05D006947 8.8e-35 151.0 150 52.7
Glyma.03G002200 Glycine max HOM05D002406 ORTHO05D006947 2.0e-34 149.8 152 51.3
Psat2g190920 Pisum sativum HOM05D002406 ORTHO05D006947 4.4e-34 148.7 153 52.3
ClCG04G006310 Citrullus lanatus HOM05D002406 ORTHO05D006947 5.7e-34 148.3 150 52.0
Ca_07769_v3 Cicer arietinum L. HOM05D002406 ORTHO05D006947 9.7e-34 147.5 152 52.0
Glyma.16G220200 Glycine max HOM05D002406 ORTHO05D006947 2.8e-33 146.0 142 53.5
Lalb_Chr07g0195731 Lupinus albus HOM05D002406 ORTHO05D006947 2.8e-33 146.0 160 51.2
TPR.G28726 Trifolium pratense HOM05D002406 ORTHO05D006947 6.3e-33 144.8 115 60.9
Sc20g0007080 Simmondsia chinensis HOM05D002406 ORTHO05D006947 1.1e-32 144.1 145 53.1
Medtr8g005720 Medicago truncatula HOM05D002406 ORTHO05D006947 1.8e-32 143.3 164 50.0
Cpa.g.sc86.72 Carica papaya HOM05D002406 ORTHO05D006947 2.0e-31 139.8 158 51.3
CDE07G2038 Ceratophyllum demersum HOM05D002406 ORTHO05D006947 2.0e-31 139.8 156 45.5
Carub.0024s0012 Capsella rubella HOM05D002406 ORTHO05D006947 5.9e-31 138.3 148 50.7
Psat3g118440 Pisum sativum HOM05D002406 ORTHO05D006947 1.3e-30 137.1 122 54.1
Zm00001eb290720 Zea mays HOM05D002406 ORTHO05D006947 5.0e-30 135.2 147 49.0
Medtr7g073530 Medicago truncatula HOM05D002406 ORTHO05D006947 6.5e-30 134.8 153 51.6
Cc06_g00310 Coffea canephora HOM05D002406 ORTHO05D006947 8.5e-30 134.4 120 58.3
AL6G10110 Arabidopsis lyrata HOM05D002406 ORTHO05D006947 3.2e-29 132.5 120 59.2
AT5G01920 Arabidopsis thaliana HOM05D002406 ORTHO05D006947 4.2e-29 132.1 120 58.3
Aa31LG5G11440 Aethionema arabicum HOM05D002406 ORTHO05D006947 5.5e-29 131.7 113 62.8
ATR1127G162 Amborella trichopoda HOM05D002406 ORTHO05D006947 5.5e-29 131.7 155 49.0
Ca_07776_v3 Cicer arietinum L. HOM05D002406 ORTHO05D006947 1.2e-28 130.6 109 60.6
CARHR212270 Cardamine hirsuta HOM05D002406 ORTHO05D006947 1.4e-27 127.1 148 50.0
TPR.G24334 Trifolium pratense HOM05D002406 ORTHO05D006947 2.3e-27 126.3 142 50.0
arahy.Tifrunner.gnm1.ann1.CCHA9U Arachis hypogaea HOM05D002406 ORTHO05D006947 2.6e-26 122.9 123 51.2
Sp6g41170 Schrenkiella parvula HOM05D002406 ORTHO05D006947 3.3e-26 122.5 122 55.7
Ca_23112_v3 Cicer arietinum L. HOM05D002406 ORTHO05D006947 4.4e-26 122.1 96 60.4
arahy.Tifrunner.gnm1.ann1.ASNK84 Arachis hypogaea HOM05D002406 ORTHO05D006947 5.7e-26 121.7 123 51.2
Os05g0480000 Oryza sativa ssp. japonica HOM05D002406 ORTHO05D006947 7.4e-26 121.3 148 45.3
A03p00050 Brassica napus HOM05D002406 ORTHO05D006947 1.3e-25 120.6 114 57.0
BraA03t09390Z Brassica rapa HOM05D002406 ORTHO05D006947 1.3e-25 120.6 114 57.0
AagrBONN_evm.TU.Sc2ySwM_368.692 Anthoceros agrestis HOM05D002406 ORTHO05D006947 2.8e-25 119.4 129 47.3
BcaB01g06255 Brassica carinata HOM05D002406 ORTHO05D006947 1.4e-24 117.1 128 51.6
BcaB01g06124 Brassica carinata HOM05D002406 ORTHO05D006947 1.8e-24 116.7 120 53.3
BolC3t12588H Brassica oleracea HOM05D002406 ORTHO05D006947 1.8e-24 116.7 120 53.3
arahy.Tifrunner.gnm1.ann1.AP19HF Arachis hypogaea HOM05D002406 ORTHO05D006947 9.1e-24 114.4 151 41.7
C03p00190 Brassica napus HOM05D002406 ORTHO05D006947 2.6e-23 112.8 119 52.1
Thhalv10013451m.g Eutrema salsugineum HOM05D002406 ORTHO05D006947 1.0e-22 110.9 120 50.0
SMO115G0202 Selaginella moellendorffii HOM05D002406 ORTHO05D006947 2.9e-22 109.4 152 40.8
Mapoly0111s0018 Marchantia polymorpha HOM05D002406 ORTHO05D006947 1.5e-21 107.1 115 50.4
GSVIVG01030166001 Vitis vinifera HOM05D002406 ORTHO05D006947 1.5e-21 107.1 86 62.8
SEGI_31195 Sequoiadendron giganteum HOM05D002406 ORTHO05D006947 4.2e-21 105.5 126 46.8
arahy.Tifrunner.gnm1.ann1.05QZQD Arachis hypogaea HOM05D002406 ORTHO05D006947 1.6e-20 103.6 100 52.0
Pp3c1_7450 Physcomitrium patens HOM05D002406 ORTHO05D006947 1.8e-19 100.1 114 44.7
arahy.Tifrunner.gnm1.ann1.B6Y5RX Arachis hypogaea HOM05D002406 ORTHO05D006947 3.4e-18 95.9 104 49.0
arahy.Tifrunner.gnm1.ann1.BNY45X Arachis hypogaea HOM05D002406 ORTHO05D082357 3.4e-18 95.9 151 36.4
CDE06G1562 Ceratophyllum demersum HOM05D002406 ORTHO05D006947 2.2e-17 93.2 86 53.5
CBR_g16874 Chara braunii HOM05D002406 ORTHO05D006947 1.1e-16 90.9 110 43.6
ECA247G2519 Erigeron canadensis HOM05D002406 ORTHO05D006947 7.5e-10 68.2 40 85.0
arahy.Tifrunner.gnm1.ann1.Y5U3QC Arachis hypogaea HOM05D002406 ORTHO05D006947 1.7e-09 67.0 73 49.3
SMO115G0306 Selaginella moellendorffii HOM05D002406 ORTHO05D006947 2.0e-07 60.1 64 50.0
MCO11G380 Micromonas commoda HOM05D002406 ORTHO05D007964 1.0e-06 57.8 65 47.7
Lalb_Chr04g0254921 Lupinus albus HOM05D002406 ORTHO05D007964 8.6e-06 54.7 61 45.9


User provided reference genes

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