Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0172301 Helianthus annuus HOM05D003503 ORTHO05D003885 6.5e-88 327.4 169 100.0
HanXRQChr06g0176361 Helianthus annuus HOM05D003503 ORTHO05D003885 1.3e-16 90.5 70 71.4
HanXRQChr05g0132771 Helianthus annuus HOM05D003503 ORTHO05D003885 6.6e-16 88.2 72 66.7
DCAR_024104 Daucus carota HOM05D003503 ORTHO05D003885 3.3e-15 85.9 69 66.7
DCAR_024103 Daucus carota HOM05D003503 ORTHO05D003885 4.3e-15 85.5 69 66.7
SalBow6G1355 Salvia bowleyana HOM05D003503 ORTHO05D003885 7.3e-15 84.7 70 65.7
Atru.chr1.937 Acer truncatum HOM05D003503 ORTHO05D003885 2.8e-14 82.8 70 62.9
Cfa016885 Carpinus fangiana HOM05D003503 ORTHO05D003885 8.1e-14 81.3 71 60.6
FAN23G1753 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.1e-14 81.3 64 62.5
FAN23G2494 Fragaria x ananassa HOM05D003503 ORTHO05D003885 8.1e-14 81.3 64 62.5
Potri.016G050300 Populus trichocarpa HOM05D003503 ORTHO05D003885 8.1e-14 81.3 71 64.8
Prupe.7G071700 Prunus persica HOM05D003503 ORTHO05D003885 8.1e-14 81.3 69 62.3
MSTRG.10833 Avicennia marina HOM05D003503 ORTHO05D003885 1.1e-13 80.9 69 62.3
CiPaw.10G029000 Carya illinoinensis HOM05D003503 ORTHO05D003885 1.1e-13 80.9 62 71.0
Haze_19934 Corylus avellana HOM05D003503 ORTHO05D003885 1.1e-13 80.9 70 61.4
ECA248G0895 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.1e-13 80.9 71 66.2
QL07p023657 Quercus lobata HOM05D003503 ORTHO05D003885 1.1e-13 80.9 68 61.8
QL07p023685 Quercus lobata HOM05D003503 ORTHO05D003885 1.1e-13 80.9 68 61.8
Sabra06G0041000 Salix brachista HOM05D003503 ORTHO05D003885 1.1e-13 80.9 71 64.8
ECA248G2321 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.4e-13 80.5 70 64.3
Cc06_g16370 Coffea canephora HOM05D003503 ORTHO05D003885 1.8e-13 80.1 69 63.8
Dinv18112 Davidia involucrata HOM05D003503 ORTHO05D003885 1.8e-13 80.1 54 74.1
FvH4_1g24920 Fragaria vesca HOM05D003503 ORTHO05D003885 2.3e-13 79.7 64 62.5
FvH4_6g18600 Fragaria vesca HOM05D003503 ORTHO05D003885 2.3e-13 79.7 64 62.5
FAN05G1437 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.3e-13 79.7 64 62.5
FAN05G4212 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.3e-13 79.7 64 62.5
FAN14G4545 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.3e-13 79.7 64 62.5
Hma1.2p1_0640F.1_g194090 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 2.3e-13 79.7 69 60.9
Potri.006G057800 Populus trichocarpa HOM05D003503 ORTHO05D003885 2.3e-13 79.7 71 63.4
FAN26G0276 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.1e-13 79.3 61 68.9
FAN26G0411 Fragaria x ananassa HOM05D003503 ORTHO05D003885 3.1e-13 79.3 61 68.9
Hma1.2p1_0174F.1_g077040 Hydrangea macrophylla HOM05D003503 ORTHO05D003885 3.1e-13 79.3 54 72.2
TAR369G0624 Trochodendron aralioides HOM05D003503 ORTHO05D001307 3.1e-13 79.3 52 75.0
Actinidia17255 Actinidia chinensis HOM05D003503 ORTHO05D003885 4.0e-13 79.0 69 62.3
FAN09G1919 Fragaria x ananassa HOM05D003503 ORTHO05D003885 4.0e-13 79.0 64 60.9
Sed0025913 Sechium edule HOM05D003503 ORTHO05D003885 4.0e-13 79.0 62 67.7
SGA_v2.0_scaffold69G23080 Striga asiatica HOM05D003503 ORTHO05D003885 4.0e-13 79.0 70 57.1
HanXRQChr15g0483571 Helianthus annuus HOM05D003503 ORTHO05D003885 5.2e-13 78.6 72 59.7
RcHm_v2.0_Chr3g0473161 Rosa chinensis HOM05D003503 ORTHO05D003885 5.2e-13 78.6 64 60.9
Sabra16G0053800 Salix brachista HOM05D003503 ORTHO05D003885 5.2e-13 78.6 71 63.4
FAN02G2343 Fragaria x ananassa HOM05D003503 ORTHO05D003885 6.8e-13 78.2 64 60.9
MD14G1063100 Malus domestica HOM05D003503 ORTHO05D003885 6.8e-13 78.2 71 53.5
Ciclev10005700m.g Citrus clementina HOM05D003503 ORTHO05D003885 8.9e-13 77.8 62 69.4
Actinidia38570 Actinidia chinensis HOM05D003503 ORTHO05D003885 1.2e-12 77.4 69 59.4
AT2G42260 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 1.5e-12 77.0 54 70.4
Manes.16G129700 Manihot esculenta HOM05D003503 ORTHO05D003885 1.5e-12 77.0 68 60.3
Aa31LG1G24010 Aethionema arabicum HOM05D003503 ORTHO05D003885 2.0e-12 76.6 63 63.5
MSTRG.26098 Avicennia marina HOM05D003503 ORTHO05D003885 2.0e-12 76.6 69 58.0
RcHm_v2.0_Chr3g0473181 Rosa chinensis HOM05D003503 ORTHO05D003885 2.0e-12 76.6 61 65.6
Migut.K00058 Erythranthe guttata HOM05D003503 ORTHO05D003885 2.6e-12 76.3 70 60.0
Rhsim04G0098700 Rhododendron simsii HOM05D003503 ORTHO05D003885 2.6e-12 76.3 62 67.7
Actinidia20299 Actinidia chinensis HOM05D003503 ORTHO05D003885 3.4e-12 75.9 63 65.1
AL4G40620 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 3.4e-12 75.9 54 68.5
Carub.0004s2460 Capsella rubella HOM05D003503 ORTHO05D003885 3.4e-12 75.9 54 68.5
CARHR137300 Cardamine hirsuta HOM05D003503 ORTHO05D003885 3.4e-12 75.9 54 68.5
Eucgr.A02419 Eucalyptus grandis HOM05D003503 ORTHO05D003885 3.4e-12 75.9 63 63.5
MD12G1062400 Malus domestica HOM05D003503 ORTHO05D003885 3.4e-12 75.9 61 63.9
Dinv24108 Davidia involucrata HOM05D003503 ORTHO05D000616 4.4e-12 75.5 54 70.4
Duzib106G0586 Durio zibethinus HOM05D003503 ORTHO05D003885 4.4e-12 75.5 87 51.7
THA.LOC104824461 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 4.4e-12 75.5 71 59.2
CiPaw.09G033400 Carya illinoinensis HOM05D003503 ORTHO05D003885 5.8e-12 75.1 62 64.5
CsaV3_4G010540 Cucumis sativus L. HOM05D003503 ORTHO05D003885 5.8e-12 75.1 62 66.1
Nn2g15511 Nelumbo nucifera HOM05D003503 ORTHO05D003885 5.8e-12 75.1 52 73.1
Sed0010654 Sechium edule HOM05D003503 ORTHO05D003885 5.8e-12 75.1 60 65.0
Thecc.06G029500 Theobroma cacao HOM05D003503 ORTHO05D003885 5.8e-12 75.1 54 66.7
Sp4g24440 Schrenkiella parvula HOM05D003503 ORTHO05D003885 7.5e-12 74.7 63 60.3
Migut.J01803 Erythranthe guttata HOM05D003503 ORTHO05D003885 9.9e-12 74.3 69 56.5
Phvul.001G138700 Phaseolus vulgaris HOM05D003503 ORTHO05D003885 9.9e-12 74.3 53 67.9
VMungo1383G2219 Vigna mungo HOM05D003503 ORTHO05D003885 9.9e-12 74.3 53 67.9
MELO3C023180.2 Cucumis melo HOM05D003503 ORTHO05D003885 1.3e-11 73.9 62 66.1
Thhalv10017150m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 1.3e-11 73.9 54 66.7
THA.LOC104802399 Tarenaya hassleriana HOM05D003503 ORTHO05D003885 1.3e-11 73.9 69 58.0
CANSAT80G0280 Cannabis sativa HOM05D003503 ORTHO05D003885 1.7e-11 73.6 63 63.5
CANSAT80G2578 Cannabis sativa HOM05D003503 ORTHO05D003885 1.7e-11 73.6 63 63.5
Thecc.05G166300 Theobroma cacao HOM05D003503 ORTHO05D003885 1.7e-11 73.6 66 56.1
Duzib128G0723 Durio zibethinus HOM05D003503 ORTHO05D003885 2.2e-11 73.2 66 60.6
Gohir.A11G313900 Gossypium hirsutum HOM05D003503 ORTHO05D003885 2.2e-11 73.2 105 43.8
Manes.03G008800 Manihot esculenta HOM05D003503 ORTHO05D003885 2.2e-11 73.2 70 58.6
Nitab4.5_0000016g0070 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.2e-11 73.2 70 55.7
Nitab4.5_0010571g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 2.2e-11 73.2 70 54.3
TWI74G1092 Tripterygium wilfordii HOM05D003503 ORTHO05D003885 2.2e-11 73.2 100 48.0
GSVIVG01033358001 Vitis vinifera HOM05D003503 ORTHO05D003885 2.2e-11 73.2 68 55.9
Haze_20095 Corylus avellana HOM05D003503 ORTHO05D003885 2.9e-11 72.8 62 61.3
CSS0007658 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 3.7e-11 72.4 73 53.4
Cfa020096 Carpinus fangiana HOM05D003503 ORTHO05D003885 3.7e-11 72.4 62 61.3
Thhalv10006194m.g Eutrema salsugineum HOM05D003503 ORTHO05D003885 3.7e-11 72.4 60 58.3
Medtr7g092570 Medicago truncatula HOM05D003503 ORTHO05D003885 3.7e-11 72.4 53 66.0
Peaxi162Scf00258g00220 Petunia axillaris HOM05D003503 ORTHO05D003885 3.7e-11 72.4 70 58.6
Peaxi162Scf00406g00711 Petunia axillaris HOM05D003503 ORTHO05D003885 3.7e-11 72.4 63 61.9
vmacro09100 Vaccinium macrocarpon HOM05D003503 ORTHO05D003885 3.7e-11 72.4 71 53.5
Cpa.g.sc85.98 Carica papaya HOM05D003503 ORTHO05D003885 4.9e-11 72.0 69 56.5
PGR004G1207 Punica granatum HOM05D003503 ORTHO05D003885 4.9e-11 72.0 67 55.2
Aa31LG10G12570 Aethionema arabicum HOM05D003503 ORTHO05D003885 6.4e-11 71.6 51 70.6
Glyma.03G141800 Glycine max HOM05D003503 ORTHO05D003885 6.4e-11 71.6 59 61.0
BcaC02g12471 Brassica carinata HOM05D003503 ORTHO05D003885 8.3e-11 71.2 53 66.0
BcaNung05887 Brassica carinata HOM05D003503 ORTHO05D003885 8.3e-11 71.2 53 66.0
A05p02800 Brassica napus HOM05D003503 ORTHO05D003885 8.3e-11 71.2 53 66.0
C04p03390 Brassica napus HOM05D003503 ORTHO05D003885 8.3e-11 71.2 53 66.0
BolC4t21976H Brassica oleracea HOM05D003503 ORTHO05D003885 8.3e-11 71.2 53 66.0
BraA05t19272Z Brassica rapa HOM05D003503 ORTHO05D003885 8.3e-11 71.2 53 66.0
CAN.G128.30 Capsicum annuum HOM05D003503 ORTHO05D003885 1.1e-10 70.9 52 67.3
Lsat_1_v5_gn_8_79401 Lactuca sativa HOM05D003503 ORTHO05D003885 1.1e-10 70.9 63 55.6
TPR.G4785 Trifolium pratense HOM05D003503 ORTHO05D003885 1.1e-10 70.9 51 68.6
CSS0013310 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 1.4e-10 70.5 73 56.2
Gorai.007G361800 Gossypium raimondii HOM05D003503 ORTHO05D003885 1.9e-10 70.1 105 42.9
Psat3g070200 Pisum sativum HOM05D003503 ORTHO05D003885 1.9e-10 70.1 69 55.1
FAN19G1882 Fragaria x ananassa HOM05D003503 ORTHO05D003885 2.4e-10 69.7 61 57.4
Glyma.19G144400 Glycine max HOM05D003503 ORTHO05D003885 2.4e-10 69.7 59 59.3
PSO541G0601 Papaver somniferum HOM05D003503 ORTHO05D003885 2.4e-10 69.7 51 68.6
PSO675G0055 Papaver somniferum HOM05D003503 ORTHO05D003885 2.4e-10 69.7 51 68.6
Gohir.D11G331100 Gossypium hirsutum HOM05D003503 ORTHO05D003885 3.2e-10 69.3 105 42.9
Peaxi162Scf00285g00427 Petunia axillaris HOM05D003503 ORTHO05D003885 3.2e-10 69.3 80 52.5
BcaB01g03443 Brassica carinata HOM05D002899 ORTHO05D003885 4.1e-10 68.9 64 54.7
Lalb_Chr18g0047601 Lupinus albus HOM05D003503 ORTHO05D003885 4.1e-10 68.9 51 66.7
BcaC07g40334 Brassica carinata HOM05D003503 ORTHO05D003885 7.1e-10 68.2 53 60.4
C08p33430 Brassica napus HOM05D003503 ORTHO05D003885 7.1e-10 68.2 53 60.4
CARHR168170 Cardamine hirsuta HOM05D003503 ORTHO05D003885 7.1e-10 68.2 59 59.3
BcaNung04400 Brassica carinata HOM05D003503 ORTHO05D003885 9.2e-10 67.8 103 41.7
COL.COLO4_28742 Corchorus olitorius HOM05D003503 ORTHO05D003885 9.2e-10 67.8 62 59.7
DCAR_020468 Daucus carota HOM05D003503 ORTHO05D003885 9.2e-10 67.8 62 59.7
Lj1g0016608 Lotus japonicus HOM05D003503 ORTHO05D003885 9.2e-10 67.8 98 41.8
Solyc10g080400.2 Solanum lycopersicum HOM05D003503 ORTHO05D003885 9.2e-10 67.8 63 57.1
Sopen10g030940 Solanum pennellii HOM05D003503 ORTHO05D003885 9.2e-10 67.8 63 57.1
PGSC0003DMG402023713 Solanum tuberosum HOM05D003503 ORTHO05D003885 1.2e-09 67.4 63 57.1
Carub.0005s2470 Capsella rubella HOM05D003503 ORTHO05D003885 1.6e-09 67.0 53 62.3
AL5G39520 Arabidopsis lyrata HOM05D003503 ORTHO05D003885 2.1e-09 66.6 53 62.3
A09p50720 Brassica napus HOM05D003503 ORTHO05D003885 2.1e-09 66.6 51 60.8
PSO384G2274 Papaver somniferum HOM05D003503 ORTHO05D003885 2.1e-09 66.6 70 51.4
SHI33674 Sapria himalayana HOM05D003503 ORTHO05D003885 2.1e-09 66.6 62 58.1
ClCG04G000340 Citrullus lanatus HOM05D003503 ORTHO05D003885 2.7e-09 66.2 70 55.7
AT3G57860 Arabidopsis thaliana HOM05D003503 ORTHO05D003885 3.5e-09 65.9 53 60.4
PSO339G6426 Papaver somniferum HOM05D003503 ORTHO05D003885 3.5e-09 65.9 81 44.4
Hund02580 Selenicereus undatus HOM05D003503 ORTHO05D003885 3.5e-09 65.9 63 57.1
BcaC07g40221 Brassica carinata HOM05D003503 ORTHO05D003885 4.6e-09 65.5 51 60.8
Hund02582 Selenicereus undatus HOM05D003503 ORTHO05D003885 4.6e-09 65.5 54 63.0
Aqoxy2G00088 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 6.0e-09 65.1 53 58.5
Aqoxy2G00125 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 6.0e-09 65.1 53 58.5
Aqoxy2G00107 Aquilegia oxysepala HOM05D003503 ORTHO05D003885 7.8e-09 64.7 60 50.0
EL10Ac5g11139 Beta vulgaris HOM05D003503 ORTHO05D003885 7.8e-09 64.7 54 63.0
BcaC07g40160 Brassica carinata HOM05D003503 ORTHO05D003885 7.8e-09 64.7 61 55.7
CSS0045770 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 7.8e-09 64.7 85 45.9
Nitab4.5_0004063g0080 Nicotiana tabacum HOM05D003503 ORTHO05D003885 7.8e-09 64.7 49 61.2
Nitab4.5_0006853g0010 Nicotiana tabacum HOM05D003503 ORTHO05D003885 7.8e-09 64.7 49 61.2
SGA_v2.0_scaffold105G30470 Striga asiatica HOM05D003503 ORTHO05D003885 7.8e-09 64.7 76 48.7
PGR031G3517 Punica granatum HOM05D003503 ORTHO05D003885 1.7e-08 63.5 74 45.9
Hund02581 Selenicereus undatus HOM05D003503 ORTHO05D003885 1.7e-08 63.5 54 61.1
SalBow1G6855 Salvia bowleyana HOM05D003503 ORTHO05D003885 2.3e-08 63.2 60 51.7
SalBow1G6809 Salvia bowleyana HOM05D003503 ORTHO05D003885 8.6e-08 61.2 95 36.8
Oeu033755.1 Olea europaea HOM05D003503 ORTHO05D003885 1.5e-07 60.5 66 53.0
ECA234G0160 Erigeron canadensis HOM05D003503 ORTHO05D003885 1.9e-07 60.1 52 67.3
Lalb_Chr15g0078851 Lupinus albus HOM05D003503 ORTHO05D003885 1.9e-07 60.1 104 40.4
AUR62021551 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.5e-07 59.7 119 37.8
Sp5g04860 Schrenkiella parvula HOM05D003503 ORTHO05D003885 2.5e-07 59.7 53 54.7
EL10Ac3g06131 Beta vulgaris HOM05D003503 ORTHO05D003885 7.3e-07 58.2 49 59.2
Ca_08494_v3 Cicer arietinum L. HOM05D003503 ORTHO05D003885 7.3e-07 58.2 50 60.0
BcaC01g05380 Brassica carinata HOM05D003503 ORTHO05D003885 1.2e-06 57.4 53 49.1
AUR62002437 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.1e-06 56.6 49 57.1
AUR62023750 Chenopodium quinoa HOM05D003503 ORTHO05D003885 2.1e-06 56.6 49 57.1
CSS0023140 Camellia sinensis var. sinensis HOM05D003503 ORTHO05D003885 2.8e-06 56.2 65 52.3
Ah.13g073290 Amaranthus hybridus HOM05D003503 ORTHO05D003885 3.6e-06 55.8 72 41.7
Cpa.g.sc85.97 Carica papaya HOM05D003503 ORTHO05D003885 3.6e-06 55.8 43 62.8
C03p27180 Brassica napus HOM05D003503 ORTHO05D003885 4.7e-06 55.5 53 47.2


User provided reference genes

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