Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0172261 Helianthus annuus HOM05D004604 ORTHO05D005744 1.3e-263 912.5 452 100.0
HanXRQChr14g0459841 Helianthus annuus HOM05D004604 ORTHO05D005744 9.5e-211 736.9 443 85.6
HanXRQChr14g0459851 Helianthus annuus HOM05D004604 ORTHO05D005744 4.9e-183 644.8 454 74.4
ECA238G1235 Erigeron canadensis HOM05D004604 ORTHO05D005744 8.4e-151 537.7 466 62.7
Lsat_1_v5_gn_2_122780 Lactuca sativa HOM05D004604 ORTHO05D005744 1.9e-142 510.0 447 61.3
Lj1C953T18 Lonicera japonica HOM05D004604 ORTHO05D005744 1.1e-134 484.2 484 55.6
Dinv34395 Davidia involucrata HOM05D004604 ORTHO05D005744 7.9e-133 478.0 493 54.2
Hma1.2p1_0446F.1_g154570 Hydrangea macrophylla HOM05D004604 ORTHO05D005744 3.9e-132 475.7 480 54.8
CSS0014761 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 3.2e-126 456.1 486 52.3
FvH4_7g24330 Fragaria vesca HOM05D004604 ORTHO05D005744 4.2e-126 455.7 477 52.8
FAN01G3126 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.2e-125 454.1 477 52.6
Migut.F01374 Erythranthe guttata HOM05D004604 ORTHO05D005744 2.1e-125 453.4 459 52.3
MD07G1220300 Malus domestica HOM05D004604 ORTHO05D005744 4.7e-125 452.2 491 50.1
Migut.F01373 Erythranthe guttata HOM05D004604 ORTHO05D005744 6.1e-125 451.8 462 52.4
FAN06G3796 Fragaria x ananassa HOM05D004604 ORTHO05D005744 1.0e-124 451.1 477 52.4
Manes.10G013900 Manihot esculenta HOM05D004604 ORTHO05D005744 1.8e-124 450.3 486 51.9
arahy.Tifrunner.gnm1.ann1.E2DHW8 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.1e-123 447.6 486 50.2
Glyma.18G028600 Glycine max HOM05D004604 ORTHO05D005744 1.1e-123 447.6 471 53.1
Lalb_Chr18g0052631 Lupinus albus HOM05D004604 ORTHO05D005744 1.1e-123 447.6 480 51.5
Potri.010G190100 Populus trichocarpa HOM05D004604 ORTHO05D005744 2.0e-123 446.8 479 52.0
CSS0028164 Camellia sinensis var. sinensis HOM05D004604 ORTHO05D005744 3.3e-123 446.0 488 52.0
Rhsim03G0142100 Rhododendron simsii HOM05D004604 ORTHO05D005744 3.3e-123 446.0 490 51.2
Cfa001330 Carpinus fangiana HOM05D004604 ORTHO05D005744 4.4e-123 445.7 473 52.2
RcHm_v2.0_Chr1g0369991 Rosa chinensis HOM05D004604 ORTHO05D005744 1.3e-122 444.1 482 52.1
Sabra10G0146600 Salix brachista HOM05D004604 ORTHO05D005744 1.7e-122 443.7 481 50.5
Phvul.001G241900 Phaseolus vulgaris HOM05D004604 ORTHO05D005744 2.8e-122 443.0 485 50.5
THA.LOC104816553 Tarenaya hassleriana HOM05D004604 ORTHO05D005744 2.8e-122 443.0 493 48.9
TAR623G0226 Trochodendron aralioides HOM05D004604 ORTHO05D005744 3.7e-122 442.6 502 50.8
TWI09G1217 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 6.3e-122 441.8 489 50.3
FAN10G0865 Fragaria x ananassa HOM05D004604 ORTHO05D005744 8.2e-122 441.4 481 50.5
Ca_15268_v3 Cicer arietinum L. HOM05D004604 ORTHO05D005744 1.1e-121 441.0 486 50.4
MSTRG.213 Avicennia marina HOM05D004604 ORTHO05D005744 1.8e-121 440.3 486 51.0
CiPaw.02G191600 Carya illinoinensis HOM05D004604 ORTHO05D005744 1.8e-121 440.3 486 50.8
Ciclev10030943m.g Citrus clementina HOM05D004604 ORTHO05D005744 7.0e-121 438.3 474 51.5
Medtr3g070310 Medicago truncatula HOM05D004604 ORTHO05D005744 9.1e-121 438.0 478 51.0
Cc02_g06650 Coffea canephora HOM05D004604 ORTHO05D005744 1.2e-120 437.6 514 48.2
MBI05_g34496_MAGBIO Magnolia biondii HOM05D004604 ORTHO05D005744 1.2e-120 437.6 502 49.6
Dinv17981 Davidia involucrata HOM05D004604 ORTHO05D005744 3.4e-120 436.0 447 55.0
Lj6g0016498 Lotus japonicus HOM05D004604 ORTHO05D005744 4.5e-120 435.6 481 48.2
MD01G1132500 Malus domestica HOM05D004604 ORTHO05D005744 5.9e-120 435.3 491 48.9
SGA_v2.0_scaffold76G25082 Striga asiatica HOM05D004604 ORTHO05D005744 5.9e-120 435.3 480 49.4
TPR.G2507 Trifolium pratense HOM05D004604 ORTHO05D005744 1.7e-119 433.7 471 50.5
CANSAT35G0855 Cannabis sativa HOM05D004604 ORTHO05D005744 3.8e-119 432.6 487 49.9
Hund13846 Selenicereus undatus HOM05D004604 ORTHO05D005744 5.0e-119 432.2 491 49.9
VMungo1383G0266 Vigna mungo HOM05D004604 ORTHO05D005744 6.5e-119 431.8 483 49.9
Lalb_Chr15g0084181 Lupinus albus HOM05D004604 ORTHO05D005744 8.5e-119 431.4 492 48.2
Prupe.2G248700 Prunus persica HOM05D004604 ORTHO05D005744 1.9e-118 430.3 487 49.9
A05p38060 Brassica napus HOM05D004604 ORTHO05D005744 2.5e-118 429.9 460 50.9
BraA05t22598Z Brassica rapa HOM05D004604 ORTHO05D005744 2.5e-118 429.9 460 50.9
Glyma.11G228500 Glycine max HOM05D004604 ORTHO05D005744 2.5e-118 429.9 471 51.6
Thecc.10G020600 Theobroma cacao HOM05D004604 ORTHO05D005744 2.5e-118 429.9 475 50.3
Atru.chr12.19 Acer truncatum HOM05D004604 ORTHO05D005744 3.2e-118 429.5 488 50.2
Sopen06g017720 Solanum pennellii HOM05D004604 ORTHO05D005744 5.5e-118 428.7 490 50.0
Haze_17214 Corylus avellana HOM05D004604 ORTHO05D005744 9.4e-118 427.9 443 53.3
PGR044G2346 Punica granatum HOM05D004604 ORTHO05D005744 1.6e-117 427.2 491 49.5
Psat5g126400 Pisum sativum HOM05D004604 ORTHO05D005744 3.6e-117 426.0 471 49.7
Aa31LG11G6730 Aethionema arabicum HOM05D004604 ORTHO05D005744 8.0e-117 424.9 489 47.6
Gorai.011G285800 Gossypium raimondii HOM05D004604 ORTHO05D005744 8.0e-117 424.9 475 49.1
Nn2g11459 Nelumbo nucifera HOM05D004604 ORTHO05D005744 8.0e-117 424.9 497 48.3
Solyc06g051760.3 Solanum lycopersicum HOM05D004604 ORTHO05D005744 8.0e-117 424.9 490 50.0
Nitab4.5_0000802g0040 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.8e-116 423.7 497 49.7
Gohir.A10G235000 Gossypium hirsutum HOM05D004604 ORTHO05D005744 3.9e-116 422.5 475 48.8
Potri.008G067000 Populus trichocarpa HOM05D004604 ORTHO05D005744 3.9e-116 422.5 487 49.1
BcaC05g29392 Brassica carinata HOM05D004604 ORTHO05D005744 5.2e-116 422.2 464 50.0
C05p56850 Brassica napus HOM05D004604 ORTHO05D005744 5.2e-116 422.2 464 50.0
BolC5t34349H Brassica oleracea HOM05D004604 ORTHO05D005744 5.2e-116 422.2 464 50.0
Haze_17213 Corylus avellana HOM05D004604 ORTHO05D005744 5.2e-116 422.2 459 51.9
CARHR207580 Cardamine hirsuta HOM05D004604 ORTHO05D005744 1.5e-115 420.6 486 47.9
Sabra08G0049200 Salix brachista HOM05D004604 ORTHO05D005744 2.0e-115 420.2 468 50.4
BcaB06g25636 Brassica carinata HOM05D004604 ORTHO05D005744 2.6e-115 419.9 465 50.1
Cpa.g.sc19.189 Carica papaya HOM05D004604 ORTHO05D005744 3.3e-115 419.5 481 49.5
ClCG11G006230 Citrullus lanatus HOM05D004604 ORTHO05D005744 4.4e-115 419.1 485 47.4
Peaxi162Scf00825g00019 Petunia axillaris HOM05D004604 ORTHO05D005744 4.4e-115 419.1 494 48.8
AL6G15600 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 7.4e-115 418.3 486 48.4
PGSC0003DMG400023817 Solanum tuberosum HOM05D004604 ORTHO05D005744 7.4e-115 418.3 490 49.6
AT5G05700 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 2.2e-114 416.8 486 47.5
Sp6g37190 Schrenkiella parvula HOM05D004604 ORTHO05D005744 2.8e-114 416.4 494 47.2
DCAR_028567 Daucus carota HOM05D004604 ORTHO05D005744 3.7e-114 416.0 478 48.7
CsaV3_6G001760 Cucumis sativus L. HOM05D004604 ORTHO05D005744 6.3e-114 415.2 496 47.2
Nitab4.5_0005174g0010 Nicotiana tabacum HOM05D004604 ORTHO05D005744 1.1e-113 414.5 495 48.7
Carub.0003s1055 Capsella rubella HOM05D004604 ORTHO05D005744 1.8e-113 413.7 473 48.4
C09p71140 Brassica napus HOM05D004604 ORTHO05D005744 3.1e-113 412.9 456 50.0
BraA10t45107Z Brassica rapa HOM05D004604 ORTHO05D005744 4.1e-113 412.5 447 50.1
CAN.G17.11 Capsicum annuum HOM05D004604 ORTHO05D005744 1.2e-112 411.0 490 49.2
TWI73G0703 Tripterygium wilfordii HOM05D004604 ORTHO05D005744 1.2e-112 411.0 530 45.7
unitig_62.g23928 Utricularia gibba HOM05D004604 ORTHO05D005744 1.6e-112 410.6 503 46.5
BolC9t59876H Brassica oleracea HOM05D004604 ORTHO05D005744 2.0e-112 410.2 456 50.0
Hund15948 Selenicereus undatus HOM05D004604 ORTHO05D005744 3.5e-112 409.5 502 47.4
MELO3C008290.2 Cucumis melo HOM05D004604 ORTHO05D005744 5.9e-112 408.7 495 46.3
A10p30660 Brassica napus HOM05D004604 ORTHO05D005744 7.7e-112 408.3 447 49.7
TAR369G0014 Trochodendron aralioides HOM05D004604 ORTHO05D005744 1.0e-111 407.9 499 48.5
EL10Ac2g04814 Beta vulgaris HOM05D004604 ORTHO05D005744 7.2e-110 401.7 472 48.9
Sp3g09520 Schrenkiella parvula HOM05D004604 ORTHO05D005744 7.2e-110 401.7 466 47.6
Ah.16g103410 Amaranthus hybridus HOM05D004604 ORTHO05D005744 1.2e-109 401.0 479 47.0
AL3G22760 Arabidopsis lyrata HOM05D004604 ORTHO05D005744 1.2e-109 401.0 446 48.7
Peaxi162Scf01208g00144 Petunia axillaris HOM05D004604 ORTHO05D005744 1.2e-109 401.0 417 53.0
arahy.Tifrunner.gnm1.ann1.C37ZT5 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.8e-108 397.1 422 50.7
CDE03G0502 Ceratophyllum demersum HOM05D004604 ORTHO05D005744 2.3e-108 396.7 468 47.6
Cpa.g.sc19.187 Carica papaya HOM05D004604 ORTHO05D005744 6.7e-108 395.2 489 45.6
Aqoxy4G02603 Aquilegia oxysepala HOM05D004604 ORTHO05D005744 1.2e-107 394.4 453 48.1
Carub.0006s0459 Capsella rubella HOM05D004604 ORTHO05D005744 1.2e-107 394.4 462 47.2
Eucgr.J00228 Eucalyptus grandis HOM05D004604 ORTHO05D005744 2.0e-107 393.7 488 46.1
CARHR085800 Cardamine hirsuta HOM05D004604 ORTHO05D005744 2.6e-107 393.3 471 48.0
vmacro06977 Vaccinium macrocarpon HOM05D004604 ORTHO05D005744 3.3e-107 392.9 472 49.6
PSO384G4393 Papaver somniferum HOM05D004604 ORTHO05D005744 5.7e-107 392.1 483 47.4
Oeu048694.1 Olea europaea HOM05D004604 ORTHO05D005744 9.7e-107 391.3 454 47.8
ATR0618G256 Amborella trichopoda HOM05D004604 ORTHO05D005744 1.3e-106 391.0 496 45.8
PSO339G2357 Papaver somniferum HOM05D004604 ORTHO05D005744 1.3e-106 391.0 479 47.2
Duzib114G0112 Durio zibethinus HOM05D004604 ORTHO05D005744 1.7e-106 390.6 458 48.9
Eucgr.J00226 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.7e-106 390.6 511 45.6
Eucgr.J00230 Eucalyptus grandis HOM05D004604 ORTHO05D005744 3.7e-106 389.4 498 45.4
Sed0013753 Sechium edule HOM05D004604 ORTHO05D005744 4.8e-106 389.0 423 49.4
Aa31LG3G4550 Aethionema arabicum HOM05D004604 ORTHO05D005744 8.2e-106 388.3 499 45.1
BcaC06g32278 Brassica carinata HOM05D004604 ORTHO05D005744 1.4e-105 387.5 452 48.2
Sc11g0007180 Simmondsia chinensis HOM05D004604 ORTHO05D005744 2.4e-105 386.7 365 54.8
GSVIVG01032843001 Vitis vinifera HOM05D004604 ORTHO05D005744 2.0e-104 383.6 419 51.6
Os05g0446800 Oryza sativa ssp. japonica HOM05D004604 ORTHO05D005744 3.5e-104 382.9 502 45.6
AUR62022867 Chenopodium quinoa HOM05D004604 ORTHO05D005744 4.5e-104 382.5 478 45.0
FAN03G0827 Fragaria x ananassa HOM05D004604 ORTHO05D005744 7.7e-104 381.7 479 46.3
Zm00001eb348230 Zea mays HOM05D004604 ORTHO05D005744 8.5e-103 378.3 481 47.2
Gohir.D10G247400 Gossypium hirsutum HOM05D004604 ORTHO05D005744 1.5e-102 377.5 361 54.6
Eucgr.J00232 Eucalyptus grandis HOM05D004604 ORTHO05D005744 5.2e-100 369.0 385 52.2
Cpa.g.sc19.188 Carica papaya HOM05D004604 ORTHO05D005744 4.4e-99 365.9 446 48.0
SEGI_40640 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 7.5e-99 365.2 503 42.5
AT3G11240 Arabidopsis thaliana HOM05D004604 ORTHO05D005744 5.0e-95 352.4 356 52.5
Actinidia29693 Actinidia chinensis HOM05D004604 ORTHO05D005744 3.3e-94 349.7 407 48.2
SEGI_28443 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.9e-90 335.9 388 46.4
SEGI_33236 Sequoiadendron giganteum HOM05D004604 ORTHO05D005744 4.9e-90 335.9 388 46.4
Eucgr.J00227 Eucalyptus grandis HOM05D004604 ORTHO05D005744 1.4e-89 334.3 340 52.1
Mapoly0067s0057 Marchantia polymorpha HOM05D004604 ORTHO05D005744 9.2e-89 331.6 487 40.5
Thhalv10013820m.g Eutrema salsugineum HOM05D004604 ORTHO05D005744 4.5e-88 329.3 270 60.0
AUR62012235 Chenopodium quinoa HOM05D004604 ORTHO05D005744 3.1e-84 316.6 384 47.1
Pp3c3_24950 Physcomitrium patens HOM05D004604 ORTHO05D005744 1.3e-79 301.2 532 36.3
SMO118G0549 Selaginella moellendorffii HOM05D004604 ORTHO05D005744 5.8e-75 285.8 465 40.2
AagrBONN_evm.TU.Sc2ySwM_117.2751 Anthoceros agrestis HOM05D004604 ORTHO05D005744 1.9e-73 280.8 465 39.4
COL.COLO4_25696 Corchorus olitorius HOM05D004604 ORTHO05D005744 3.1e-68 263.5 363 46.0
arahy.Tifrunner.gnm1.ann1.3RRJ97 Arachis hypogaea HOM05D004604 ORTHO05D005744 1.8e-52 211.1 349 37.5
PRCOL_00002395 Prasinoderma coloniale HOM05D004604 ORTHO05D005744 8.4e-50 202.2 503 30.0
Actinidia33931 Actinidia chinensis HOM05D004604 ORTHO05D005744 2.4e-49 200.7 427 36.1
MCO15G553 Micromonas commoda HOM05D004604 ORTHO05D005744 1.6e-45 188.0 167 54.5
CBR_g49483 Chara braunii HOM05D004604 ORTHO05D005744 9.0e-44 182.2 341 35.5
Cre13.g580600 Chlamydomonas reinhardtii HOM05D004604 ORTHO05D005744 2.6e-43 180.6 193 45.1
Cfa022588 Carpinus fangiana HOM05D004604 ORTHO05D005744 2.7e-24 117.5 161 38.5
HPP92_018034 Vanilla planifolia HOM05D004604 ORTHO05D005744 2.2e-18 97.8 250 32.0
HPP92_018033 Vanilla planifolia HOM05D004604 ORTHO05D005744 3.1e-12 77.4 42 85.7
PSO339G5386 Papaver somniferum HOM05D004604 ORTHO05D005744 5.0e-10 70.1 34 82.4
Peaxi162Scf01208g00156 Petunia axillaris HOM05D004604 ORTHO05D005744 1.0e-07 62.4 32 84.4
CBR_g49485 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-06 58.5 39 64.1


User provided reference genes

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