Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 9.3e-187 656.8 339 100.0
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.8e-134 483.0 285 87.4
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 8.6e-116 421.0 260 83.1
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 2.1e-114 416.4 255 83.1
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 8.1e-98 361.3 203 88.2
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 7.6e-96 354.8 282 68.1
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 9.9e-96 354.4 273 68.5
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.7e-95 353.6 278 70.9
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.2e-95 353.2 282 67.7
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.9e-95 352.8 230 76.5
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 9.3e-94 347.8 283 67.1
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 1.6e-93 347.1 276 66.3
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 7.8e-93 344.7 270 68.5
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 1.3e-92 344.0 274 67.9
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 2.3e-92 343.2 276 67.4
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 6.6e-92 341.7 244 72.1
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 1.1e-91 340.9 276 67.4
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 1.9e-91 340.1 285 66.7
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.9e-91 340.1 282 65.2
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 2.5e-91 339.7 281 66.9
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 3.3e-91 339.3 274 67.2
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 3.3e-91 339.3 283 66.8
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 4.3e-91 339.0 280 66.8
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 7.3e-91 338.2 282 64.9
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.6e-90 337.0 249 67.9
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.1e-90 336.7 280 63.2
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 2.8e-90 336.3 245 69.8
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 8.1e-90 334.7 286 63.6
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 1.4e-89 334.0 287 63.8
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 1.4e-89 334.0 285 65.3
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 1.8e-89 333.6 214 78.5
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 2.4e-89 333.2 245 69.4
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 2.4e-89 333.2 274 65.7
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.4e-89 333.2 226 73.5
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 2.4e-89 333.2 216 78.2
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 9.0e-89 331.3 288 63.5
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 1.5e-88 330.5 288 63.2
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 2.0e-88 330.1 292 62.7
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.6e-88 329.7 226 72.1
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 3.4e-88 329.3 261 67.8
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 7.6e-88 328.2 223 72.6
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 9.9e-88 327.8 259 67.6
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 1.3e-87 327.4 264 66.3
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 2.2e-87 326.6 207 79.2
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 3.8e-87 325.9 209 75.1
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 3.8e-87 325.9 248 69.8
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 3.8e-87 325.9 223 73.1
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 3.8e-87 325.9 277 66.4
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.9e-87 325.5 259 66.8
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 1.4e-86 323.9 259 66.8
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 2.4e-86 323.2 278 65.5
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 3.2e-86 322.8 246 68.7
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 5.4e-86 322.0 216 75.0
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 7.1e-86 321.6 241 71.4
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 7.1e-86 321.6 241 71.4
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 2.1e-85 320.1 280 61.8
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 6.0e-85 318.5 201 79.1
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 1.8e-84 317.0 201 76.6
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 5.1e-84 315.5 284 62.0
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 8.7e-84 314.7 201 77.6
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 1.1e-83 314.3 241 69.7
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 1.9e-83 313.5 201 78.6
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 2.5e-83 313.2 201 79.1
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 2.5e-83 313.2 273 63.0
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 2.5e-83 313.2 265 64.5
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 2.5e-83 313.2 264 62.9
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 3.3e-83 312.8 235 69.8
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 4.3e-83 312.4 228 71.9
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.6e-82 310.5 284 60.2
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 2.1e-82 310.1 269 63.2
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 3.7e-82 309.3 246 66.3
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 4.8e-82 308.9 282 61.3
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 6.2e-82 308.5 211 74.9
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 8.1e-82 308.1 245 65.7
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 1.1e-81 307.8 230 70.9
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 1.4e-81 307.4 282 60.6
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 1.4e-81 307.4 246 66.7
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 1.4e-81 307.4 246 66.7
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 3.1e-81 306.2 271 63.1
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 5.3e-81 305.4 277 61.0
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 5.8e-80 302.0 182 83.0
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 2.2e-79 300.1 195 74.9
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 3.8e-79 299.3 276 61.2
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 4.9e-79 298.9 251 65.3
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 8.4e-79 298.1 205 74.1
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.1e-78 297.7 243 63.4
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 1.1e-78 297.7 214 72.0
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.4e-78 297.4 227 68.3
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 1.9e-78 297.0 244 66.0
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 4.2e-78 295.8 205 74.1
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 4.2e-78 295.8 275 61.1
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 5.5e-78 295.4 234 68.4
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 1.2e-77 294.3 203 74.4
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 2.7e-77 293.1 204 73.5
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 2.7e-77 293.1 205 70.7
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 3.5e-77 292.7 242 63.6
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 4.6e-77 292.4 238 66.8
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 6.0e-77 292.0 205 73.2
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.8e-76 290.4 212 71.7
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.8e-76 290.4 212 71.7
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.8e-76 290.4 184 79.3
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 3.0e-76 289.7 178 79.2
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 3.9e-76 289.3 205 72.7
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 1.9e-75 287.0 264 62.1
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 4.3e-75 285.8 256 59.0
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 4.3e-75 285.8 290 56.6
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 1.3e-74 284.3 278 60.4
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.8e-74 283.1 209 72.2
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 4.8e-74 282.3 220 68.2
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 4.8e-74 282.3 178 78.1
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 1.1e-73 281.2 194 73.7
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.2e-72 277.7 272 60.3
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.5e-72 277.3 280 58.6
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 4.9e-71 272.3 203 67.5
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 1.1e-70 271.2 180 74.4
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 1.9e-70 270.4 208 66.3
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 3.5e-69 266.2 200 66.5
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 6.0e-69 265.4 201 65.7
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 2.3e-68 263.5 199 67.8
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 1.1e-67 261.2 227 62.6
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 5.7e-67 258.8 264 56.8
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 1.1e-65 254.6 295 50.2
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 9.0e-65 251.5 185 73.0
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 1.1e-62 244.6 237 54.9
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 7.2e-62 241.9 238 53.8
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-61 241.1 166 69.9
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 1.2e-61 241.1 166 69.9
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 3.3e-59 233.0 237 52.7
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 6.3e-58 228.8 220 57.7
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 5.3e-57 225.7 184 64.1
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 2.2e-55 220.3 248 52.8
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 4.4e-51 206.1 131 77.1
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.1e-49 201.4 277 47.7
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 1.9e-46 190.7 115 82.6
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 6.1e-45 185.7 114 77.2
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 8.0e-45 185.3 193 54.9
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 4.4e-43 179.5 97 89.7
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 3.1e-41 173.3 199 45.7
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 7.0e-41 172.2 172 50.6
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 2.8e-34 150.2 220 44.1
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 3.5e-32 143.3 88 77.3
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.8e-28 131.0 205 43.9
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 5.4e-25 119.4 199 36.7
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 9.1e-25 118.6 212 35.4
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.0e-24 117.5 191 39.3
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 6.6e-23 112.5 70 74.3
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 1.5e-22 111.3 130 50.8
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 2.5e-22 110.5 65 78.5
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.6e-21 107.8 193 36.8
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 4.7e-21 106.3 144 48.6
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.0e-15 88.6 177 36.2
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 4.7e-13 79.7 58 65.5
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 2.0e-11 74.3 67 58.2
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 2.9e-10 70.5 113 43.4
MBI06_g06479_MAGBIO Magnolia biondii HOM05D001108 ORTHO05D005418 3.2e-09 67.0 69 59.4
BolC9t54441H Brassica oleracea HOM05D001108 ORTHO05D005418 1.7e-07 61.2 38 73.7
Psat0s773g0040 Pisum sativum HOM05D001108 ORTHO05D005418 5.0e-07 59.7 43 67.4


User provided reference genes

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