Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 1.2e-118 429.9 223 100.0
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 3.6e-102 375.2 223 86.1
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 1.0e-96 357.1 227 85.0
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 2.0e-84 316.2 222 74.8
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 7.5e-84 314.3 222 74.3
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 2.4e-82 309.3 226 73.0
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 9.1e-82 307.4 224 72.8
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.2e-81 307.0 224 72.3
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.7e-80 303.1 221 72.9
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 5.0e-80 301.6 217 71.9
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 5.0e-80 301.6 224 71.0
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 6.5e-80 301.2 221 72.9
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 1.5e-79 300.1 223 71.3
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.9e-79 299.7 222 72.1
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 3.6e-78 295.4 225 69.8
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 4.7e-78 295.0 224 70.1
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 8.0e-78 294.3 220 70.0
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 2.3e-77 292.7 225 69.3
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 3.0e-77 292.4 225 68.4
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 3.0e-77 292.4 222 70.7
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 6.8e-77 291.2 222 71.2
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 1.5e-76 290.0 217 70.0
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 3.4e-76 288.9 221 70.1
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 7.5e-76 287.7 221 68.8
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 2.8e-75 285.8 222 67.6
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 6.3e-75 284.6 220 67.3
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 8.3e-75 284.3 242 65.7
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 1.1e-74 283.9 217 66.8
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 5.4e-74 281.6 223 68.2
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 7.0e-74 281.2 219 68.5
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 7.0e-74 281.2 219 68.5
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.6e-73 280.0 217 68.7
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 1.6e-73 280.0 242 64.5
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 4.5e-73 278.5 217 69.1
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 5.9e-73 278.1 219 67.6
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 5.9e-73 278.1 219 67.6
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 5.9e-73 278.1 201 73.6
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 1.0e-72 277.3 224 68.3
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 2.3e-72 276.2 216 67.1
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 2.3e-72 276.2 217 66.8
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 2.9e-72 275.8 242 62.4
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 3.8e-72 275.4 223 69.5
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 5.0e-72 275.0 220 67.7
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 8.6e-72 274.2 225 66.2
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 8.6e-72 274.2 243 63.0
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.1e-71 273.9 221 66.5
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.1e-71 273.9 243 62.1
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 1.5e-71 273.5 206 71.4
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 1.5e-71 273.5 239 62.3
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 5.6e-71 271.6 242 62.8
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 7.3e-71 271.2 222 64.9
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 7.3e-71 271.2 230 65.7
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 9.5e-71 270.8 219 65.8
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 1.2e-70 270.4 217 66.4
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 1.6e-70 270.0 198 72.2
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.6e-70 270.0 243 62.1
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 2.1e-70 269.6 209 68.4
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.0e-69 267.3 225 65.3
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 1.8e-69 266.5 215 66.5
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 1.8e-69 266.5 220 66.4
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 2.3e-69 266.2 225 65.3
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.3e-69 266.2 224 64.7
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 3.0e-69 265.8 222 65.3
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 3.0e-69 265.8 216 64.4
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 8.9e-69 264.2 222 65.8
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.2e-68 263.8 222 65.3
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.5e-68 263.5 219 65.8
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 1.5e-68 263.5 222 64.9
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 2.0e-68 263.1 216 65.3
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 3.4e-68 262.3 216 64.4
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 2.9e-67 259.2 227 63.9
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 4.9e-67 258.5 219 62.1
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 1.1e-66 257.3 198 69.2
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 1.4e-66 256.9 223 64.1
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.4e-66 256.9 200 68.0
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 1.8e-66 256.5 231 61.9
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 4.1e-66 255.4 228 62.3
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 4.1e-66 255.4 196 67.9
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 5.4e-66 255.0 228 62.3
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 2.0e-65 253.1 234 61.1
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 5.0e-64 248.4 233 60.5
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 6.6e-64 248.1 230 62.2
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 1.1e-63 247.3 223 61.4
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 2.5e-63 246.1 202 66.3
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 3.3e-63 245.7 203 64.5
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 9.5e-63 244.2 226 62.4
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 2.8e-62 242.7 237 57.8
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 8.0e-62 241.1 178 69.7
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 8.0e-62 241.1 200 65.0
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 2.3e-61 239.6 180 70.0
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 3.4e-60 235.7 207 61.4
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 1.3e-59 233.8 218 60.1
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 4.6e-57 225.3 202 60.9
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 2.8e-54 216.1 195 60.5
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 2.3e-53 213.0 153 71.2
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 6.2e-46 188.3 232 49.6
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 2.3e-45 186.4 237 47.3
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 8.9e-45 184.5 194 55.7
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 3.4e-44 182.6 219 49.3
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 2.9e-43 179.5 224 50.9
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 4.9e-43 178.7 152 63.8
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 1.2e-38 164.1 197 50.3
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 4.0e-37 159.1 185 47.6
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.3e-35 154.1 217 45.6
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 1.7e-35 153.7 158 53.8
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 5.4e-34 148.7 162 49.4
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 1.7e-32 143.7 112 64.3
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 7.3e-31 138.3 155 47.1
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.8e-29 133.7 95 69.5
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.3e-22 110.9 103 61.2
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 1.6e-22 110.5 157 43.9
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 2.6e-20 103.2 151 45.0
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 2.9e-19 99.8 115 44.3
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 1.4e-18 97.4 98 52.0
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 1.5e-12 77.4 154 35.1
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 1.1e-07 61.2 36 75.0
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.3e-06 57.8 53 52.8
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 2.1e-06 57.0 52 55.8
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.8e-06 55.8 53 52.8
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.8e-06 55.8 53 52.8
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 4.8e-06 55.8 53 52.8
Gohir.D01G074900 Gossypium hirsutum HOM05D006960 ORTHO05D008699 6.3e-06 55.5 73 45.2


User provided reference genes

Program Settings