Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 0.0e+00 1665.6 819 100.0
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 0.0e+00 1231.1 771 78.6
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 0.0e+00 1171.8 816 71.4
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 0.0e+00 1146.3 796 70.9
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 0.0e+00 1145.2 794 71.2
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 1.7e-295 1019.2 836 61.6
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 8.9e-284 980.3 873 58.8
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 3.2e-281 971.8 842 59.1
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 2.3e-279 965.7 844 58.1
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 3.9e-279 964.9 803 60.8
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 1.6e-277 959.5 799 60.7
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 2.1e-277 959.1 814 59.1
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 6.4e-274 947.6 826 57.9
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 1.2e-272 943.3 832 58.3
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 2.1e-272 942.6 826 57.0
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 4.6e-272 941.4 806 58.1
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 3.9e-271 938.3 846 56.3
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 7.3e-270 934.1 834 57.6
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 9.5e-270 933.7 822 57.2
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 1.4e-268 929.9 773 60.7
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 1.5e-267 926.4 829 55.6
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 5.8e-267 924.5 819 56.9
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 1.4e-265 919.8 827 56.2
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 1.9e-265 919.5 809 56.9
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.9e-265 919.5 836 56.5
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 7.8e-264 914.1 827 55.9
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 3.9e-263 911.8 820 54.5
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 5.1e-263 911.4 827 56.3
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 1.3e-261 906.7 845 54.7
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 1.1e-260 903.7 811 55.4
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 8.4e-258 894.0 843 55.8
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 2.1e-256 889.4 803 56.7
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 3.0e-255 885.6 832 55.3
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 1.9e-254 882.9 745 61.3
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 4.3e-254 881.7 824 54.4
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 4.3e-254 881.7 832 55.9
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 7.3e-254 880.9 830 56.4
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.3e-254 880.9 802 55.5
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.3e-253 880.2 838 54.2
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 4.0e-252 875.2 813 54.6
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 5.3e-252 874.8 812 54.1
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.9e-250 869.0 831 55.4
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.8e-250 868.6 831 55.4
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 8.4e-250 867.5 827 54.5
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 4.2e-249 865.1 775 57.0
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 5.4e-249 864.8 788 55.1
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 1.2e-248 863.6 851 52.5
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 7.9e-248 860.9 839 53.9
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.5e-246 856.7 813 54.4
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 2.5e-246 855.9 775 55.2
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 9.6e-246 854.0 818 54.3
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 2.8e-245 852.4 791 53.7
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 8.1e-245 850.9 793 54.1
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.1e-244 850.5 805 52.9
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 2.4e-244 849.4 844 52.1
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 6.9e-244 847.8 825 52.7
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.2e-243 847.0 840 51.8
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 3.4e-243 845.5 792 55.4
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.0e-242 844.0 827 52.8
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.5e-241 839.3 775 54.7
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 5.5e-241 838.2 845 53.4
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 7.1e-241 837.8 787 56.0
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.6e-240 836.6 791 53.9
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 1.0e-239 833.9 789 53.2
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.9e-238 829.7 817 51.8
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 1.9e-238 829.7 815 52.0
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 2.5e-238 829.3 836 51.0
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.4e-238 827.8 825 51.8
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 3.7e-237 825.5 847 51.2
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 3.7e-237 825.5 814 53.2
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.2e-237 824.7 825 51.3
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 3.1e-236 822.4 759 54.0
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.9e-236 821.2 831 52.9
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 3.4e-235 818.9 821 51.9
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.0e-234 817.4 782 53.6
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 1.0e-234 817.4 843 51.5
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 2.9e-234 815.8 802 52.5
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 5.0e-234 815.1 868 49.2
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 4.6e-232 808.5 769 54.4
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 2.3e-231 806.2 793 52.2
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.0e-231 805.8 837 50.1
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 5.1e-231 805.1 821 51.4
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 4.3e-230 802.0 796 51.9
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 7.4e-230 801.2 830 51.2
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 1.3e-229 800.4 813 51.2
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 1.6e-229 800.0 822 50.5
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 3.7e-229 798.9 827 50.9
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 4.1e-228 795.4 832 50.4
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.2e-227 793.9 746 54.4
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 2.2e-226 789.6 813 50.7
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 2.9e-226 789.3 818 50.6
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 7.2e-225 784.6 799 51.4
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.6e-224 782.3 822 49.4
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 4.6e-224 781.9 828 50.7
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 4.6e-224 781.9 828 50.7
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 6.1e-224 781.6 823 50.4
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 8.8e-223 777.7 815 50.2
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 4.3e-222 775.4 823 50.2
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.3e-221 773.9 820 49.4
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.1e-220 768.8 684 57.6
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 5.3e-220 768.5 846 48.2
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.5e-217 758.4 657 58.1
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.2e-216 757.3 846 47.6
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 3.0e-215 752.7 724 54.3
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 6.1e-208 728.4 693 55.8
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 3.0e-207 726.1 721 51.3
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 3.3e-206 722.6 718 52.5
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 2.8e-205 719.5 846 47.3
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.9e-201 706.8 836 44.5
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 2.5e-201 706.4 857 45.2
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 5.0e-194 682.2 831 43.4
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.2e-192 677.6 676 52.1
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 1.2e-187 661.0 826 42.4
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 3.5e-187 659.4 677 49.6
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.6e-184 650.6 944 39.6
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 5.7e-182 642.1 539 56.4
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.3e-181 641.0 797 43.5
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 6.8e-175 618.6 876 41.8
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 2.5e-169 600.1 715 46.9
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.0e-166 590.5 760 40.0
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 8.3e-165 585.1 601 51.7
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 3.0e-162 576.6 606 49.0
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 6.4e-157 558.9 717 45.2
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 1.1e-145 521.5 385 64.9
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.1e-135 486.9 728 40.4
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 8.7e-130 468.8 452 52.4
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 7.1e-124 449.1 342 65.5
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 1.9e-121 441.0 568 43.3
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 2.5e-121 440.7 339 64.0
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.6e-120 438.0 715 36.1
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 9.1e-103 379.0 443 49.2
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 2.6e-102 377.5 323 57.0
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 8.2e-96 355.9 483 41.2
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 9.1e-87 325.9 814 28.3
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 9.1e-87 325.9 436 42.2
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 7.7e-86 322.8 359 43.5
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 1.4e-82 312.0 878 26.9
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.0e-78 298.1 458 36.7
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 1.5e-73 282.0 372 41.9
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 2.6e-73 281.2 291 48.5
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 9.2e-63 246.1 400 34.0
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 3.5e-54 217.6 176 65.9
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.6e-51 208.8 295 43.4
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.3e-50 204.9 199 51.8
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 2.7e-46 191.4 181 54.7
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 4.3e-28 131.0 118 47.5
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.5e-20 105.1 114 41.2
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.6e-19 101.3 107 50.5
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 8.1e-19 100.1 142 40.1
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 1.8e-18 99.0 87 64.4
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 3.0e-13 81.6 107 48.6
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.4e-10 72.8 63 44.4
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 7.6e-09 67.0 63 54.0
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 1.3e-08 66.2 73 52.1
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.2e-08 65.5 64 42.2
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 8.4e-08 63.5 59 49.2


User provided reference genes

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