Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0170181 Helianthus annuus HOM05D005028 ORTHO05D006028 3.1e-119 431.8 218 100.0
Lsat_1_v5_gn_7_4161 Lactuca sativa HOM05D005028 ORTHO05D006028 1.6e-83 313.2 220 73.6
Lsat_1_v5_gn_7_18681 Lactuca sativa HOM05D005028 ORTHO05D006028 3.1e-82 308.9 223 73.1
HanXRQChr04g0121191 Helianthus annuus HOM05D005028 ORTHO05D006028 2.2e-64 249.6 167 77.2
Lsat_1_v5_gn_4_35880 Lactuca sativa HOM05D005028 ORTHO05D006028 9.6e-60 234.2 184 58.7
HanXRQChr16g0522391 Helianthus annuus HOM05D005028 ORTHO05D006028 2.4e-58 229.6 228 53.1
ECA234G2903 Erigeron canadensis HOM05D005028 ORTHO05D006028 2.9e-56 222.6 185 57.3
Cc02_g38190 Coffea canephora HOM05D005028 ORTHO05D006028 3.2e-55 219.2 176 54.5
vmacro13267 Vaccinium macrocarpon HOM05D005028 ORTHO05D006028 7.4e-52 208.0 183 55.7
Actinidia10042 Actinidia chinensis HOM05D005028 ORTHO05D006028 9.6e-52 207.6 207 51.2
Duzib138G1785 Durio zibethinus HOM05D005028 ORTHO05D006028 9.6e-52 207.6 195 52.3
GSVIVG01026950001 Vitis vinifera HOM05D005028 ORTHO05D006028 1.3e-51 207.2 186 54.3
Actinidia20894 Actinidia chinensis HOM05D005028 ORTHO05D006028 3.7e-51 205.7 208 51.4
Dinv32494 Davidia involucrata HOM05D005028 ORTHO05D006028 4.8e-51 205.3 186 54.3
Manes.05G033100 Manihot esculenta HOM05D005028 ORTHO05D006028 1.4e-50 203.8 207 49.8
Thecc.01G357500 Theobroma cacao HOM05D005028 ORTHO05D006028 1.4e-50 203.8 184 53.3
Nitab4.5_0002811g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 2.4e-50 203.0 188 51.6
TWI23G0157 Tripterygium wilfordii HOM05D005028 ORTHO05D006028 4.0e-50 202.2 202 49.0
Lj7A510T39 Lonicera japonica HOM05D005028 ORTHO05D006028 1.2e-49 200.7 192 47.9
SGA_v2.0_scaffold95G28829 Striga asiatica HOM05D005028 ORTHO05D006028 2.0e-49 199.9 181 53.6
Atru.chr5.513 Acer truncatum HOM05D005028 ORTHO05D006028 2.6e-49 199.5 182 50.5
CAN.G116.15 Capsicum annuum HOM05D005028 ORTHO05D006028 4.9e-48 195.3 191 49.7
Oeu052955.1 Olea europaea HOM05D005028 ORTHO05D006028 8.4e-48 194.5 194 48.5
Peaxi162Scf00008g02424 Petunia axillaris HOM05D005028 ORTHO05D006028 1.1e-47 194.1 184 51.1
MD01G1065300 Malus domestica HOM05D005028 ORTHO05D006028 1.9e-47 193.4 203 49.3
PGSC0003DMG400006503 Solanum tuberosum HOM05D005028 ORTHO05D006028 1.9e-47 193.4 181 49.7
Hma1.2p1_0780F.1_g216740 Hydrangea macrophylla HOM05D005028 ORTHO05D006028 3.2e-47 192.6 220 46.4
Nitab4.5_0000386g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 3.2e-47 192.6 181 50.8
Solyc10g012400.3 Solanum lycopersicum HOM05D005028 ORTHO05D006028 3.2e-47 192.6 190 48.4
Sopen10g006230 Solanum pennellii HOM05D005028 ORTHO05D006028 4.2e-47 192.2 181 49.7
Prupe.2G172500 Prunus persica HOM05D005028 ORTHO05D006028 5.5e-47 191.8 203 47.8
TAR374G1129 Trochodendron aralioides HOM05D005028 ORTHO05D006028 5.5e-47 191.8 183 51.9
Gohir.D07G147300 Gossypium hirsutum HOM05D005028 ORTHO05D006028 1.2e-46 190.7 181 49.7
unitig_26.g9301 Utricularia gibba HOM05D000773 ORTHO05D006028 1.2e-46 190.7 189 49.7
Migut.B01770 Erythranthe guttata HOM05D005028 ORTHO05D006028 2.1e-46 189.9 175 51.4
MD07G1135200 Malus domestica HOM05D005028 ORTHO05D006028 4.6e-46 188.7 180 52.2
Nn1g01568 Nelumbo nucifera HOM05D005028 ORTHO05D006028 4.6e-46 188.7 201 46.3
ClCG05G001460 Citrullus lanatus HOM05D005028 ORTHO05D006028 1.0e-45 187.6 193 48.7
Glyma.18G234400 Glycine max HOM05D005028 ORTHO05D006028 2.3e-45 186.4 198 51.5
RcHm_v2.0_Chr1g0356151 Rosa chinensis HOM05D005028 ORTHO05D006028 3.0e-45 186.0 203 47.3
Nitab4.5_0000583g0210 Nicotiana tabacum HOM05D005028 ORTHO05D006028 6.7e-45 184.9 180 48.9
Phvul.008G061400 Phaseolus vulgaris HOM05D005028 ORTHO05D006028 6.7e-45 184.9 180 53.3
MSTRG.20842 Avicennia marina HOM05D005028 ORTHO05D006028 8.7e-45 184.5 195 49.2
TAR375G0288 Trochodendron aralioides HOM05D005028 ORTHO05D006028 1.1e-44 184.1 190 47.4
PGR042G1182 Punica granatum HOM05D005028 ORTHO05D006028 1.9e-44 183.3 186 47.3
Gohir.A07G141900 Gossypium hirsutum HOM05D005028 ORTHO05D006028 2.5e-44 183.0 181 48.1
Potri.014G086200 Populus trichocarpa HOM05D005028 ORTHO05D006028 2.5e-44 183.0 162 50.0
CiPaw.02G032200 Carya illinoinensis HOM05D005028 ORTHO05D006028 3.3e-44 182.6 202 48.0
Eucgr.E00119 Eucalyptus grandis HOM05D005028 ORTHO05D006028 5.7e-44 181.8 180 51.1
THA.LOC104802036 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 5.7e-44 181.8 211 47.4
Ciclev10022241m.g Citrus clementina HOM05D005028 ORTHO05D006028 7.4e-44 181.4 177 50.8
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 7.4e-44 181.4 193 47.7
DCAR_015106 Daucus carota HOM05D005028 ORTHO05D006028 7.4e-44 181.4 170 52.4
MELO3C006103.2 Cucumis melo HOM05D005028 ORTHO05D006028 9.6e-44 181.0 204 46.1
CANSAT56G0390 Cannabis sativa HOM05D005028 ORTHO05D006028 1.3e-43 180.6 204 49.0
Nitab4.5_0006018g0040 Nicotiana tabacum HOM05D005028 ORTHO05D006028 1.6e-43 180.3 179 46.9
Cpa.g.sc11.21 Carica papaya HOM05D005028 ORTHO05D006028 3.7e-43 179.1 197 48.7
Glyma.09G258300 Glycine max HOM05D005028 ORTHO05D006028 3.7e-43 179.1 199 49.7
Lj1g0018179 Lotus japonicus HOM05D005028 ORTHO05D006028 4.8e-43 178.7 204 49.5
VMungo1383G1301 Vigna mungo HOM05D005028 ORTHO05D006028 8.2e-43 177.9 198 49.0
PSO210G4593 Papaver somniferum HOM05D005028 ORTHO05D006028 1.1e-42 177.6 189 46.6
Sed0007874 Sechium edule HOM05D005028 ORTHO05D006028 1.1e-42 177.6 186 47.3
QL04p053913 Quercus lobata HOM05D005028 ORTHO05D006028 1.4e-42 177.2 179 50.3
Sabra14G0062500 Salix brachista HOM05D005028 ORTHO05D006028 1.4e-42 177.2 195 45.6
FvH4_7g14630 Fragaria vesca HOM05D005028 ORTHO05D006028 1.8e-42 176.8 186 47.3
FAN06G2873 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.8e-42 176.8 186 47.3
FAN10G3452 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.8e-42 176.8 186 47.3
FAN10G4091 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.8e-42 176.8 186 47.3
arahy.Tifrunner.gnm1.ann1.C7F7IC Arachis hypogaea HOM05D005028 ORTHO05D006028 2.4e-42 176.4 217 43.8
FAN03G1762 Fragaria x ananassa HOM05D005028 ORTHO05D006028 2.4e-42 176.4 186 47.3
FAN06G0569 Fragaria x ananassa HOM05D005028 ORTHO05D006028 3.1e-42 176.0 186 47.3
PSO832G0747 Papaver somniferum HOM05D005028 ORTHO05D006028 3.1e-42 176.0 189 46.0
Gorai.001G168500 Gossypium raimondii HOM05D005028 ORTHO05D006028 4.1e-42 175.6 212 42.9
DCAR_007443 Daucus carota HOM05D005028 ORTHO05D006028 5.3e-42 175.3 180 49.4
Rhsim07G0013700 Rhododendron simsii HOM05D005028 ORTHO05D006028 9.0e-42 174.5 163 52.1
THA.LOC104817298 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 1.5e-41 173.7 202 46.0
AL4G45230 Arabidopsis lyrata HOM05D005028 ORTHO05D006028 2.6e-41 172.9 203 47.8
Ca_07933_v3 Cicer arietinum L. HOM05D005028 ORTHO05D006028 2.6e-41 172.9 204 46.6
MBI18_g02833_MAGBIO Magnolia biondii HOM05D005028 ORTHO05D006028 2.6e-41 172.9 168 49.4
A03p25430 Brassica napus HOM05D005028 ORTHO05D006028 3.4e-41 172.6 205 47.8
FAN01G1655 Fragaria x ananassa HOM05D005028 ORTHO05D006028 3.4e-41 172.6 179 48.0
Psat3g107720 Pisum sativum HOM05D005028 ORTHO05D006028 3.4e-41 172.6 196 47.4
arahy.Tifrunner.gnm1.ann1.EZF1CG Arachis hypogaea HOM05D005028 ORTHO05D006028 5.9e-41 171.8 183 48.1
arahy.Tifrunner.gnm1.ann1.US4SCG Arachis hypogaea HOM05D005028 ORTHO05D006028 5.9e-41 171.8 183 48.1
Cfa003905 Carpinus fangiana HOM05D005028 ORTHO05D006028 5.9e-41 171.8 163 50.9
Haze_15525 Corylus avellana HOM05D005028 ORTHO05D006028 5.9e-41 171.8 180 47.2
EL10Ac1g00399 Beta vulgaris HOM05D005028 ORTHO05D006028 1.3e-40 170.6 195 43.6
TPR.G37810 Trifolium pratense HOM05D005028 ORTHO05D006028 1.3e-40 170.6 197 46.2
Lalb_Chr04g0253811 Lupinus albus HOM05D005028 ORTHO05D006028 2.2e-40 169.9 199 46.2
Ah.05g180490 Amaranthus hybridus HOM05D005028 ORTHO05D006028 2.9e-40 169.5 182 44.0
AUR62022583 Chenopodium quinoa HOM05D005028 ORTHO05D006028 5.0e-40 168.7 154 48.7
Haze_01381 Corylus avellana HOM05D005028 ORTHO05D006028 7.2e-39 164.9 159 49.7
COL.COLO4_12727 Corchorus olitorius HOM05D005028 ORTHO05D006028 2.7e-38 162.9 197 45.7
Aa31LG1G27410 Aethionema arabicum HOM05D005028 ORTHO05D006028 3.6e-38 162.5 177 48.0
Carub.0004s2870 Capsella rubella HOM05D005028 ORTHO05D006028 3.6e-38 162.5 192 49.0
AUR62004377 Chenopodium quinoa HOM05D005028 ORTHO05D006028 3.6e-38 162.5 189 43.4
Thhalv10001635m.g Eutrema salsugineum HOM05D005028 ORTHO05D006028 6.1e-38 161.8 195 47.7
ATR0680G399 Amborella trichopoda HOM05D005028 ORTHO05D006028 7.9e-38 161.4 181 44.8
QL04p053899 Quercus lobata HOM05D005028 ORTHO05D006028 1.0e-37 161.0 179 44.1
Sc23g0002800 Simmondsia chinensis HOM05D005028 ORTHO05D006028 1.0e-37 161.0 187 43.3
BolC3t15383H Brassica oleracea HOM05D005028 ORTHO05D006028 1.3e-37 160.6 203 44.3
HPP92_025966 Vanilla planifolia HOM05D005028 ORTHO05D006028 1.3e-37 160.6 172 45.9
Mapoly0023s0066 Marchantia polymorpha HOM05D005028 ORTHO05D006028 3.0e-37 159.5 218 39.9
C04p72030 Brassica napus HOM05D005028 ORTHO05D006028 3.9e-37 159.1 187 47.1
BolC4t28699H Brassica oleracea HOM05D005028 ORTHO05D006028 3.9e-37 159.1 187 47.1
BcaC02g12158 Brassica carinata HOM05D005028 ORTHO05D006028 5.1e-37 158.7 150 53.3
C03p30330 Brassica napus HOM05D005028 ORTHO05D006028 5.1e-37 158.7 198 44.4
PGSC0003DMG400000176 Solanum tuberosum HOM05D005028 ORTHO05D006028 5.1e-37 158.7 191 41.9
Solyc01g094780.4 Solanum lycopersicum HOM05D005028 ORTHO05D006028 6.7e-37 158.3 192 42.2
AT2G46000 Arabidopsis thaliana HOM05D005028 ORTHO05D006028 1.1e-36 157.5 188 47.3
A04p34210 Brassica napus HOM05D005028 ORTHO05D006028 1.1e-36 157.5 181 47.0
BraA04t18882Z Brassica rapa HOM05D005028 ORTHO05D006028 1.1e-36 157.5 181 47.0
Medtr7g077890 Medicago truncatula HOM05D005028 ORTHO05D006028 1.1e-36 157.5 203 43.3
AagrBONN_evm.TU.Sc2ySwM_228.1428 Anthoceros agrestis HOM05D005028 ORTHO05D006028 3.3e-36 156.0 183 42.6
SalBow3G2695 Salvia bowleyana HOM05D005028 ORTHO05D006028 2.2e-35 153.3 186 45.2
C04p06920 Brassica napus HOM05D005028 ORTHO05D006028 2.8e-35 152.9 184 46.2
BolC4t22313H Brassica oleracea HOM05D005028 ORTHO05D006028 2.8e-35 152.9 184 46.2
ECA236G3403 Erigeron canadensis HOM05D005028 ORTHO05D006028 2.8e-35 152.9 111 68.5
Sp4g28070 Schrenkiella parvula HOM05D005028 ORTHO05D006028 6.3e-35 151.8 192 45.8
Peaxi162Scf00020g00731 Petunia axillaris HOM05D005028 ORTHO05D006028 1.4e-34 150.6 165 46.7
A05p05990 Brassica napus HOM05D005028 ORTHO05D006028 2.4e-34 149.8 203 44.3
BraA05t19562Z Brassica rapa HOM05D005028 ORTHO05D006028 2.4e-34 149.8 203 44.3
SMO203G0053 Selaginella moellendorffii HOM05D005028 ORTHO05D006028 3.1e-34 149.4 165 44.8
Aqoxy7G00275 Aquilegia oxysepala HOM05D005028 ORTHO05D006028 5.3e-34 148.7 180 43.3
Zm00001eb402990 Zea mays HOM05D005028 ORTHO05D006028 9.1e-34 147.9 183 39.9
Os03g0148300 Oryza sativa ssp. japonica HOM05D005028 ORTHO05D006028 1.2e-33 147.5 198 42.9
CARHR141270 Cardamine hirsuta HOM05D005028 ORTHO05D006028 3.4e-33 146.0 180 45.0
Zm00001eb003870 Zea mays HOM05D005028 ORTHO05D006028 1.7e-32 143.7 183 40.4
BcaC01g05100 Brassica carinata HOM05D005028 ORTHO05D006028 5.0e-32 142.1 148 51.4
BraA03t11762Z Brassica rapa HOM05D005028 ORTHO05D006028 6.5e-32 141.7 152 50.0
CDE09G1157 Ceratophyllum demersum HOM05D005028 ORTHO05D006028 9.4e-31 137.9 174 44.3
Pp3c14_2680 Physcomitrium patens HOM05D005028 ORTHO05D006028 8.8e-29 131.3 181 42.0
SEGI_06430 Sequoiadendron giganteum HOM05D005028 ORTHO05D006028 1.2e-25 120.9 139 47.5
Ciclev10006561m.g Citrus clementina HOM05D005028 ORTHO05D006028 3.4e-25 119.4 115 49.6
Manes.01G255500 Manihot esculenta HOM05D005028 ORTHO05D006028 1.3e-24 117.5 184 37.0
A04p17020 Brassica napus HOM05D005028 ORTHO05D006028 3.9e-21 105.9 183 36.1
RcHm_v2.0_Chr1g0356451 Rosa chinensis HOM05D005028 ORTHO05D006028 1.1e-20 104.4 92 51.1
CANSAT25G0788 Cannabis sativa HOM05D005028 ORTHO05D006028 6.3e-19 98.6 92 51.1
BraA08t32322Z Brassica rapa HOM05D005028 ORTHO05D006028 2.9e-16 89.7 84 48.8
BcaC02g07785 Brassica carinata HOM05D005028 ORTHO05D006028 3.8e-16 89.4 133 37.6
BcaB01g03242 Brassica carinata HOM05D005028 ORTHO05D006028 7.2e-15 85.1 126 43.7
C09p26600 Brassica napus HOM05D005028 ORTHO05D006028 2.2e-11 73.6 123 36.6
BcaC02g08371 Brassica carinata HOM05D005028 ORTHO05D006028 1.3e-08 64.3 64 45.3
Atru.chr3.1868 Acer truncatum HOM05D005028 ORTHO05D006028 9.4e-07 58.2 58 50.0
Atru.chr3.1882 Acer truncatum HOM05D005028 ORTHO05D006028 1.6e-06 57.4 57 50.9
CBR_g3867 Chara braunii HOM05D005028 ORTHO05D006028 1.6e-06 57.4 181 28.7


User provided reference genes

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