Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 0.0e+00 1081.6 523 100.0
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.9e-234 815.8 519 78.0
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 6.8e-229 797.3 528 75.0
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 5.8e-220 767.7 527 72.3
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 2.9e-219 765.4 508 74.8
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 4.9e-219 764.6 527 72.1
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 1.0e-216 756.9 528 71.8
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 3.9e-216 755.0 527 70.2
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 5.1e-216 754.6 516 77.5
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 1.1e-215 753.4 528 72.0
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.5e-215 752.3 528 71.4
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 2.1e-214 749.2 527 70.8
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 3.6e-214 748.4 534 70.8
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 6.2e-214 747.7 534 71.0
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 6.2e-214 747.7 536 70.1
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 6.2e-214 747.7 536 70.1
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 8.1e-214 747.3 511 71.2
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 8.1e-214 747.3 511 71.2
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 8.1e-214 747.3 511 71.2
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 8.1e-214 747.3 513 71.3
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 1.4e-213 746.5 528 71.2
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.4e-213 745.7 511 71.0
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.0e-213 745.0 511 71.0
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 5.2e-213 744.6 528 71.2
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 6.9e-213 744.2 511 71.0
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 3.4e-212 741.9 527 70.4
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 4.4e-212 741.5 511 70.5
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 5.8e-212 741.1 527 70.4
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 7.6e-212 740.7 527 70.4
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 7.6e-212 740.7 530 70.4
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.9e-212 740.3 527 70.6
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.9e-212 740.3 528 70.8
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 9.9e-212 740.3 527 70.4
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 4.9e-211 738.0 513 70.4
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 8.4e-211 737.3 528 70.3
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.9e-210 736.1 513 71.0
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 3.2e-210 735.3 530 68.7
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 3.2e-210 735.3 521 70.2
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 3.2e-210 735.3 514 70.4
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 9.3e-210 733.8 531 69.7
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 1.6e-209 733.0 513 71.7
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 3.5e-209 731.9 528 69.1
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 3.5e-209 731.9 528 69.1
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 1.7e-208 729.6 536 67.5
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 2.3e-208 729.2 528 68.8
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 2.3e-208 729.2 513 70.4
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 3.0e-208 728.8 523 69.2
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 3.9e-208 728.4 537 67.6
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 5.1e-208 728.0 528 68.9
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 4.3e-207 724.9 506 71.3
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 1.3e-206 723.4 524 69.8
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 3.6e-206 721.8 517 70.4
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 2.4e-205 719.2 513 69.8
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 3.1e-205 718.8 517 70.0
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 4.0e-205 718.4 529 67.3
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 1.5e-204 716.5 537 66.5
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 7.6e-204 714.1 535 67.7
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.3e-203 713.4 530 68.3
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 3.8e-203 711.8 526 69.6
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 6.4e-203 711.1 528 67.6
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 5.4e-202 708.0 535 66.7
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 5.4e-202 708.0 535 66.7
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 5.4e-202 708.0 521 67.8
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 1.6e-201 706.4 527 66.2
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 2.1e-201 706.1 517 68.5
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 6.0e-201 704.5 527 66.6
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 7.9e-201 704.1 543 65.7
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.8e-200 703.0 512 69.1
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.3e-200 702.6 532 67.5
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 5.1e-200 701.4 515 68.3
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.5e-199 699.9 524 67.6
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 5.6e-199 698.0 512 68.4
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 7.4e-199 697.6 525 66.1
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 7.4e-199 697.6 512 68.6
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 1.3e-198 696.8 517 67.1
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 1.6e-198 696.4 532 67.7
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 1.6e-198 696.4 532 67.1
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 2.1e-198 696.0 491 70.7
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 2.8e-198 695.7 526 68.3
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 6.2e-198 694.5 526 66.0
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.1e-197 692.2 530 66.4
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 6.9e-197 691.0 517 68.5
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 2.0e-196 689.5 514 67.3
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 6.4e-195 684.5 534 65.0
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 8.4e-195 684.1 533 66.4
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 6.0e-193 677.9 533 65.1
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 1.3e-192 676.8 517 68.5
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 1.8e-192 676.4 534 65.9
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 1.1e-191 673.7 540 65.2
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 2.5e-191 672.5 517 67.1
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 2.5e-191 672.5 478 71.3
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 3.3e-191 672.2 517 67.1
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 1.4e-189 666.8 520 66.5
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 1.4e-189 666.8 520 66.5
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 1.4e-189 666.8 520 66.5
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 2.4e-189 666.0 542 63.7
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.4e-189 666.0 496 67.7
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 4.0e-189 665.2 517 64.8
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 5.3e-189 664.8 540 64.4
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 4.5e-188 661.8 536 64.7
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 5.8e-188 661.4 553 63.1
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 1.7e-187 659.8 521 65.6
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 6.5e-187 657.9 520 64.4
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 8.4e-187 657.5 529 63.9
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 3.2e-186 655.6 528 63.4
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 4.2e-186 655.2 551 62.8
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 5.1e-184 648.3 536 61.9
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 4.3e-183 645.2 517 63.4
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 2.0e-180 636.3 523 64.2
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 4.5e-180 635.2 533 61.5
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 5.0e-179 631.7 510 64.9
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 5.0e-179 631.7 510 64.9
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 5.0e-179 631.7 510 64.9
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 2.3e-176 622.9 518 63.1
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 1.2e-172 610.5 535 60.7
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 1.5e-172 610.1 510 62.9
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.0e-172 609.8 529 59.7
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 1.1e-165 587.4 519 60.7
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 5.9e-164 581.6 554 56.9
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 8.0e-161 571.2 426 67.6
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 1.6e-156 557.0 532 57.0
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.6e-148 530.4 567 51.9
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 5.0e-147 525.4 521 54.5
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 1.9e-146 523.5 425 64.5
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 1.0e-136 491.1 523 52.2
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 3.3e-130 469.5 388 65.2
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 6.1e-129 465.3 298 76.5
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.7e-126 457.2 526 47.5
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 3.9e-115 419.5 334 62.3
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.1e-108 397.1 368 55.2
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 6.4e-102 375.6 366 52.5
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.9e-90 337.4 282 59.9
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 1.0e-83 315.1 348 52.0
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 9.4e-61 238.8 386 41.7
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 1.8e-59 234.6 524 31.7
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 6.1e-52 209.5 212 51.9
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 1.3e-49 201.8 162 60.5
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 3.2e-37 160.6 164 51.8
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 2.7e-28 131.0 281 30.6
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 2.3e-27 127.9 133 48.9
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 1.4e-24 118.6 78 75.6
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 1.8e-24 118.2 102 61.8
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 2.4e-16 91.3 72 61.1
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 1.6e-15 88.6 62 71.0
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 4.4e-10 70.5 58 63.8


User provided reference genes

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