Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0168031 Helianthus annuus HOM05D004068 ORTHO05D004700 6.6e-125 450.7 220 100.0
HanXRQChr16g0512461 Helianthus annuus HOM05D004068 ORTHO05D004700 1.3e-75 287.0 232 66.4
ECA236G4612 Erigeron canadensis HOM05D004068 ORTHO05D004700 1.2e-70 270.4 223 62.3
MD09G1287000 Malus domestica HOM05D004068 ORTHO05D004700 5.7e-68 261.5 157 74.5
Prupe.3G006200 Prunus persica HOM05D004068 ORTHO05D004700 2.2e-67 259.6 150 76.7
Migut.D00035 Erythranthe guttata HOM05D004068 ORTHO05D004700 2.4e-66 256.1 217 58.5
Glyma.10G009700 Glycine max HOM05D004068 ORTHO05D004700 3.1e-66 255.8 222 60.8
RcHm_v2.0_Chr3g0486891 Rosa chinensis HOM05D004068 ORTHO05D004700 3.1e-66 255.8 150 76.7
COL.COLO4_23168 Corchorus olitorius HOM05D004068 ORTHO05D004700 9.0e-66 254.2 221 60.6
Nitab4.5_0004218g0050 Nicotiana tabacum HOM05D004068 ORTHO05D004700 9.0e-66 254.2 150 74.0
PGR083G2849 Punica granatum HOM05D004068 ORTHO05D004700 1.5e-65 253.4 168 69.6
MSTRG.18070 Avicennia marina HOM05D004068 ORTHO05D004700 2.6e-65 252.7 219 59.4
Glyma.02G009000 Glycine max HOM05D004068 ORTHO05D004700 2.6e-65 252.7 216 60.2
Duzib138G0863 Durio zibethinus HOM05D004068 ORTHO05D004700 3.4e-65 252.3 145 76.6
Lalb_Chr06g0167051 Lupinus albus HOM05D004068 ORTHO05D004700 3.4e-65 252.3 219 57.1
Actinidia21362 Actinidia chinensis HOM05D004068 ORTHO05D004700 4.5e-65 251.9 168 68.5
Manes.05G011200 Manihot esculenta HOM05D004068 ORTHO05D004700 4.5e-65 251.9 192 64.6
FAN23G3049 Fragaria x ananassa HOM05D004068 ORTHO05D004700 7.7e-65 251.1 150 75.3
Cfa004871 Carpinus fangiana HOM05D004068 ORTHO05D004700 1.0e-64 250.8 217 59.0
Gorai.007G119900 Gossypium raimondii HOM05D004068 ORTHO05D004700 1.3e-64 250.4 178 68.0
Medtr1g086340 Medicago truncatula HOM05D004068 ORTHO05D004700 1.3e-64 250.4 220 59.5
Peaxi162Scf00919g00026 Petunia axillaris HOM05D004068 ORTHO05D004700 1.3e-64 250.4 149 73.2
Actinidia06383 Actinidia chinensis HOM05D004068 ORTHO05D004700 1.7e-64 250.0 150 73.3
Eucgr.H00894 Eucalyptus grandis HOM05D004068 ORTHO05D004700 1.7e-64 250.0 174 65.5
Solyc01g068020.4 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.2e-64 249.6 171 64.9
Sopen01g029940 Solanum pennellii HOM05D004068 ORTHO05D004700 2.2e-64 249.6 171 64.9
SalBow6G1478 Salvia bowleyana HOM05D004068 ORTHO05D004700 2.9e-64 249.2 173 68.8
Nitab4.5_0000222g0260 Nicotiana tabacum HOM05D004068 ORTHO05D004700 3.8e-64 248.8 182 65.4
PSO170G5617 Papaver somniferum HOM05D004068 ORTHO05D004700 3.8e-64 248.8 166 66.9
PSO357G0073 Papaver somniferum HOM05D004068 ORTHO05D004700 3.8e-64 248.8 176 63.6
CAN.G100.22 Capsicum annuum HOM05D004068 ORTHO05D004700 5.0e-64 248.4 235 52.8
Rhsim13G0001400 Rhododendron simsii HOM05D004068 ORTHO05D004700 5.0e-64 248.4 191 60.7
Gohir.D11G111800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 1.1e-63 247.3 145 75.9
Nn3g21863 Nelumbo nucifera HOM05D004068 ORTHO05D004700 1.1e-63 247.3 217 62.2
Ciclev10022090m.g Citrus clementina HOM05D004068 ORTHO05D004700 3.2e-63 245.7 155 71.0
GSVIVG01028194001 Vitis vinifera HOM05D004068 ORTHO05D004700 5.5e-63 245.0 229 56.8
CiPaw.07G122600 Carya illinoinensis HOM05D004068 ORTHO05D004700 7.2e-63 244.6 187 63.6
Lsat_1_v5_gn_8_167400 Lactuca sativa HOM05D004068 ORTHO05D004700 7.2e-63 244.6 143 77.6
AL1G11820 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 9.4e-63 244.2 160 68.8
EL10As5g23587 Beta vulgaris HOM05D004068 ORTHO05D004700 9.4e-63 244.2 158 71.5
Cc01_g21940 Coffea canephora HOM05D004068 ORTHO05D004700 1.2e-62 243.8 149 74.5
AT1G02475 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.6e-62 243.4 160 68.8
Solyc01g068030.3 Solanum lycopersicum HOM05D004068 ORTHO05D004700 2.7e-62 242.7 150 70.0
PGSC0003DMG400005200 Solanum tuberosum HOM05D004068 ORTHO05D004700 2.7e-62 242.7 150 70.7
Thecc.01G321500 Theobroma cacao HOM05D004068 ORTHO05D004700 2.7e-62 242.7 221 57.9
Thhalv10008722m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 3.6e-62 242.3 186 61.3
CSS0008406 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 6.1e-62 241.5 149 70.5
CsaV3_7G030310 Cucumis sativus L. HOM05D004068 ORTHO05D004700 7.9e-62 241.1 179 63.7
MELO3C023625.2 Cucumis melo HOM05D004068 ORTHO05D004700 1.0e-61 240.7 224 54.9
CANSAT54G1466 Cannabis sativa HOM05D004068 ORTHO05D004700 1.4e-61 240.4 217 57.1
CARHR001800 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.4e-61 240.4 154 70.8
FAN28G2449 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.4e-61 240.4 180 65.0
Sopen01g029950 Solanum pennellii HOM05D004068 ORTHO05D004700 1.4e-61 240.4 150 69.3
C05p01270 Brassica napus HOM05D004068 ORTHO05D004700 2.3e-61 239.6 187 61.5
A10p01270 Brassica napus HOM05D004068 ORTHO05D004700 3.9e-61 238.8 160 68.8
SGA_v2.0_scaffold417G51268 Striga asiatica HOM05D004068 ORTHO05D004700 5.1e-61 238.4 229 54.6
Carub.0001s0155 Capsella rubella HOM05D004068 ORTHO05D004700 1.1e-60 237.3 179 62.6
PGR083G1259 Punica granatum HOM05D004068 ORTHO05D004700 1.5e-60 236.9 164 66.5
TWI14G0788 Tripterygium wilfordii HOM05D004068 ORTHO05D004700 2.0e-60 236.5 227 54.6
Sp1g01550 Schrenkiella parvula HOM05D004068 ORTHO05D004700 3.3e-60 235.7 159 67.9
unitig_90.g27445 Utricularia gibba HOM05D004068 ORTHO05D004700 3.3e-60 235.7 144 72.9
Sed0027961 Sechium edule HOM05D004068 ORTHO05D004700 5.7e-60 235.0 226 56.6
Sed0019105 Sechium edule HOM05D004068 ORTHO05D004700 1.3e-59 233.8 223 56.5
FAN26G1054 Fragaria x ananassa HOM05D004068 ORTHO05D004700 4.8e-59 231.9 211 56.4
Gohir.A07G130200 Gossypium hirsutum HOM05D004068 ORTHO05D004700 4.8e-59 231.9 215 54.4
HPP92_010032 Vanilla planifolia HOM05D004068 ORTHO05D004700 1.1e-58 230.7 162 64.8
Potri.002G190300 Populus trichocarpa HOM05D004068 ORTHO05D004700 1.4e-58 230.3 209 56.0
TAR633G0425 Trochodendron aralioides HOM05D004068 ORTHO05D004700 3.1e-58 229.2 198 59.1
AUR62024574 Chenopodium quinoa HOM05D004068 ORTHO05D004700 6.9e-58 228.0 168 65.5
Gorai.001G146300 Gossypium raimondii HOM05D004068 ORTHO05D004700 6.9e-58 228.0 217 54.4
Aqoxy2G02578 Aquilegia oxysepala HOM05D004068 ORTHO05D004700 9.1e-58 227.6 142 69.7
Gohir.D07G134600 Gossypium hirsutum HOM05D004068 ORTHO05D004700 2.0e-57 226.5 217 53.9
Potri.014G115400 Populus trichocarpa HOM05D004068 ORTHO05D004700 2.0e-57 226.5 224 54.9
THA.LOC104801318 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.6e-57 226.1 216 55.1
Zm00001eb131060 Zea mays HOM05D004068 ORTHO05D004700 2.6e-57 226.1 146 67.8
Aa31LG1G10110 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.4e-57 225.7 159 64.2
BcaB03g15774 Brassica carinata HOM05D004068 ORTHO05D004700 3.4e-57 225.7 157 65.6
FAN19G0978 Fragaria x ananassa HOM05D004068 ORTHO05D004700 1.7e-56 223.4 212 55.2
Atru.chr5.916 Acer truncatum HOM05D004068 ORTHO05D004700 2.5e-55 219.5 163 62.0
BraA10t42405Z Brassica rapa HOM05D004068 ORTHO05D004700 5.5e-55 218.4 188 58.0
FvH4_1g26710 Fragaria vesca HOM05D004068 ORTHO05D004700 5.5e-55 218.4 139 73.4
CAN.G100.23 Capsicum annuum HOM05D004068 ORTHO05D004700 2.7e-54 216.1 140 66.4
AT4G01883 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 6.1e-54 214.9 200 54.0
Haze_05111 Corylus avellana HOM05D004068 ORTHO05D004700 1.0e-53 214.2 161 62.7
Carub.0006s3535 Capsella rubella HOM05D004068 ORTHO05D004700 1.8e-53 213.4 161 59.6
TAR636G1362 Trochodendron aralioides HOM05D004068 ORTHO05D004700 3.9e-53 212.2 122 80.3
Hma1.2p1_0484F.1_g162840 Hydrangea macrophylla HOM05D004068 ORTHO05D004700 1.1e-52 210.7 207 53.6
Thhalv10028926m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.5e-52 210.3 159 59.7
Thhalv10028927m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.5e-52 210.3 159 59.7
QL12p034273 Quercus lobata HOM05D004068 ORTHO05D004700 2.0e-52 209.9 187 56.7
Sp6g01730 Schrenkiella parvula HOM05D004068 ORTHO05D004700 4.4e-52 208.8 147 62.6
Hund09678 Selenicereus undatus HOM05D004068 ORTHO05D004700 5.7e-52 208.4 131 71.0
AL6G51410 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 1.3e-51 207.2 173 57.2
Lj1A11T70 Lonicera japonica HOM05D004068 ORTHO05D004700 1.7e-51 206.8 198 52.0
MBI19_g32706_MAGBIO Magnolia biondii HOM05D004068 ORTHO05D004700 6.3e-51 204.9 167 59.3
BcaB01g02105 Brassica carinata HOM05D004068 ORTHO05D004700 8.2e-51 204.5 216 51.4
BolC5t28909H Brassica oleracea HOM05D004068 ORTHO05D004700 8.2e-51 204.5 150 64.7
AUR62011741 Chenopodium quinoa HOM05D004068 ORTHO05D004700 2.4e-50 203.0 196 53.1
THA.LOC104801319 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 2.4e-50 203.0 159 59.1
ATR0693G403 Amborella trichopoda HOM05D004068 ORTHO05D004700 7.0e-50 201.4 197 54.8
BcaC04g24068 Brassica carinata HOM05D004068 ORTHO05D004700 1.2e-49 200.7 160 59.4
SEGI_19128 Sequoiadendron giganteum HOM05D004068 ORTHO05D004700 1.6e-49 200.3 154 56.5
CiPaw.08G084800 Carya illinoinensis HOM05D004068 ORTHO05D004700 1.3e-48 197.2 106 78.3
Sabra14G0085500 Salix brachista HOM05D004068 ORTHO05D004700 2.2e-48 196.4 194 52.1
BcaC07g42396 Brassica carinata HOM05D004068 ORTHO05D004700 1.5e-47 193.7 138 63.8
C09p01400 Brassica napus HOM05D004068 ORTHO05D004700 2.5e-47 193.0 162 57.4
Sc17g0000200 Simmondsia chinensis HOM05D004068 ORTHO05D004700 4.2e-47 192.2 178 57.3
CDE02G2955 Ceratophyllum demersum HOM05D000037 ORTHO05D001684 7.2e-47 191.4 171 53.8
BolC9t53073H Brassica oleracea HOM05D004068 ORTHO05D004700 1.2e-46 190.7 168 55.4
Duzib211G0484 Durio zibethinus HOM05D004068 ORTHO05D004700 1.6e-46 190.3 184 55.4
Thhalv10008621m.g Eutrema salsugineum HOM05D004068 ORTHO05D004700 1.6e-46 190.3 169 50.3
Cpa.g.sc67.88 Carica papaya HOM05D004068 ORTHO05D004700 3.6e-46 189.1 129 65.9
Mapoly0066s0015 Marchantia polymorpha HOM05D004068 ORTHO05D004700 8.0e-46 188.0 148 56.8
AT1G02470 Arabidopsis thaliana HOM05D004068 ORTHO05D004700 1.8e-45 186.8 145 54.5
Carub.0001s0154 Capsella rubella HOM05D004068 ORTHO05D004700 4.0e-45 185.7 165 49.1
AL1G11810 Arabidopsis lyrata HOM05D004068 ORTHO05D004700 6.7e-45 184.9 145 54.5
Sp1g01540 Schrenkiella parvula HOM05D004068 ORTHO05D004700 6.7e-45 184.9 169 47.3
BcaC07g42395 Brassica carinata HOM05D004068 ORTHO05D004700 7.5e-44 181.4 169 47.3
A10p01260 Brassica napus HOM05D004068 ORTHO05D004700 7.5e-44 181.4 169 47.3
BolC8t52840H Brassica oleracea HOM05D004068 ORTHO05D004700 7.5e-44 181.4 169 47.3
THA.LOC104801317 Tarenaya hassleriana HOM05D004068 ORTHO05D004700 7.5e-44 181.4 154 53.9
BraA10t42404Z Brassica rapa HOM05D004068 ORTHO05D004700 3.7e-43 179.1 169 46.7
C05p01260 Brassica napus HOM05D004068 ORTHO05D004700 4.8e-43 178.7 169 46.7
Pp3c26_7940 Physcomitrium patens HOM05D004068 ORTHO05D004700 4.8e-43 178.7 143 54.5
A09p68650 Brassica napus HOM05D004068 ORTHO05D004700 6.3e-43 178.3 171 47.4
BraA09t42208Z Brassica rapa HOM05D004068 ORTHO05D004700 6.3e-43 178.3 171 47.4
CARHR001790 Cardamine hirsuta HOM05D004068 ORTHO05D004700 1.4e-42 177.2 145 51.7
Aa31LG1G10100 Aethionema arabicum HOM05D004068 ORTHO05D004700 1.8e-42 176.8 145 51.7
AagrBONN_evm.TU.Sc2ySwM_228.3301 Anthoceros agrestis HOM05D004068 ORTHO05D004700 2.7e-41 172.9 215 43.7
HPP92_015252 Vanilla planifolia HOM05D004068 ORTHO05D004700 2.7e-41 172.9 109 68.8
MD17G1279300 Malus domestica HOM05D004068 ORTHO05D004700 3.8e-40 169.1 97 73.2
DCAR_018255 Daucus carota HOM05D004068 ORTHO05D004700 5.0e-40 168.7 90 81.1
Gohir.A11G106800 Gossypium hirsutum HOM05D004068 ORTHO05D004700 3.2e-39 166.0 125 64.0
SMO134G0067 Selaginella moellendorffii HOM05D004068 ORTHO05D004700 7.2e-39 164.9 136 53.7
VMungo0720G2238 Vigna mungo HOM05D004068 ORTHO05D004700 7.2e-39 164.9 206 45.1
ClCG09G004770 Citrullus lanatus HOM05D004068 ORTHO05D004700 1.8e-37 160.2 239 44.8
Sabra02G0165200 Salix brachista HOM05D004068 ORTHO05D004700 2.3e-37 159.8 170 49.4
CSS0047755 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.0e-37 159.5 90 73.3
CSS0031477 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 3.4e-36 156.0 90 71.1
Pp3c9_13510 Physcomitrium patens HOM05D004068 ORTHO05D004700 7.5e-36 154.8 143 43.4
C08p53250 Brassica napus HOM05D004068 ORTHO05D004700 1.7e-35 153.7 145 46.2
CBR_g29411 Chara braunii HOM05D004068 ORTHO05D004700 3.7e-35 152.5 154 48.7
CARHR249850 Cardamine hirsuta HOM05D004068 ORTHO05D004700 2.4e-34 149.8 96 66.7
Phvul.007G211200 Phaseolus vulgaris HOM05D004068 ORTHO05D004700 1.0e-29 134.4 111 60.4
Ah.02g112620 Amaranthus hybridus HOM05D004068 ORTHO05D004700 1.4e-29 134.0 148 48.6
Cre14.g616250 Chlamydomonas reinhardtii HOM05D004068 ORTHO05D004700 4.0e-29 132.5 145 42.8
Lj5g0018153 Lotus japonicus HOM05D004068 ORTHO05D004700 2.6e-28 129.8 131 51.1
arahy.Tifrunner.gnm1.ann1.20WW32 Arachis hypogaea HOM05D004068 ORTHO05D004700 7.5e-28 128.3 219 41.1
Psat6g159440 Pisum sativum HOM05D004068 ORTHO05D004700 2.2e-27 126.7 79 68.4
PRCOL_00002997 Prasinoderma coloniale HOM05D004068 ORTHO05D004700 2.8e-27 126.3 168 38.7
Aa31LG5G1470 Aethionema arabicum HOM05D004068 ORTHO05D004700 3.1e-26 122.9 147 47.6
Dinv12104 Davidia involucrata HOM05D004068 ORTHO05D004700 9.2e-26 121.3 64 78.1
arahy.Tifrunner.gnm1.ann1.G5UTBZ Arachis hypogaea HOM05D004068 ORTHO05D004700 2.0e-25 120.2 219 38.8
MCO03G258 Micromonas commoda HOM05D004068 ORTHO05D004700 4.5e-25 119.0 141 36.2
Ca_10252_v3 Cicer arietinum L. HOM05D004068 ORTHO05D004700 7.8e-25 118.2 136 46.3
TPR.G3089 Trifolium pratense HOM05D004068 ORTHO05D004700 2.5e-23 113.2 67 71.6
BraA09t35801Z Brassica rapa HOM05D004068 ORTHO05D004700 6.1e-22 108.6 72 62.5
vmacro09333 Vaccinium macrocarpon HOM05D004068 ORTHO05D004700 8.0e-22 108.2 65 69.2
CAN.G257.121 Capsicum annuum HOM05D004068 ORTHO05D004700 1.7e-16 90.5 62 62.9
TPR.G3034 Trifolium pratense HOM05D004068 ORTHO05D004700 3.3e-15 86.3 57 70.2
Os01g0328600 Oryza sativa ssp. japonica HOM05D004068 ORTHO05D004700 2.6e-12 76.6 76 50.0
Glyma.19G225300 Glycine max HOM05D004068 ORTHO05D004700 4.4e-12 75.9 84 45.2
Oeu052569.2 Olea europaea HOM05D004068 ORTHO05D004700 9.8e-12 74.7 47 70.2
Oeu044746.1 Olea europaea HOM05D004068 ORTHO05D004700 4.1e-10 69.3 57 57.9
BcaC03g18203 Brassica carinata HOM05D004068 ORTHO05D004700 6.0e-09 65.5 57 52.6
A02p42700 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-08 64.7 55 52.7
C02p62690 Brassica napus HOM05D004068 ORTHO05D004700 1.0e-08 64.7 55 52.7
A09p01340 Brassica napus HOM05D004068 ORTHO05D004700 8.6e-08 61.6 40 62.5
CSS0034791 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.8e-06 56.6 62 50.0
CSS0043421 Camellia sinensis var. sinensis HOM05D004068 ORTHO05D004700 2.8e-06 56.6 62 50.0


User provided reference genes

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