Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 2561.6 1251 100.0
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1821.6 1260 73.0
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1709.5 1301 68.3
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1366.3 1322 54.3
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1362.1 1383 52.8
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1344.7 1399 52.0
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1340.9 1385 52.1
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1339.7 1402 52.3
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1313.9 1382 50.9
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1312.4 1435 49.8
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1302.3 1396 50.4
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1300.8 1396 50.5
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1292.3 1427 50.6
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1286.2 1402 51.0
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1284.2 1481 48.6
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1280.4 1331 50.3
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1275.0 1377 50.0
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1271.9 1368 49.7
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1271.5 1332 50.4
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1271.1 1323 50.6
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1270.8 1380 50.7
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1270.0 1321 50.9
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1269.6 1322 50.8
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1269.2 1389 50.8
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1268.8 1443 48.7
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1268.1 1327 50.2
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1266.9 1377 50.5
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1266.9 1325 50.3
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1265.0 1330 49.8
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1264.6 1323 50.2
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1264.2 1389 49.8
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1263.8 1325 50.2
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1263.4 1369 49.2
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1262.7 1385 51.0
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1261.1 1350 51.1
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1257.7 1354 51.3
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1255.4 1388 49.1
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1254.6 1371 49.7
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1254.2 1402 48.4
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1253.8 1383 49.7
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1253.0 1364 49.9
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1252.3 1389 50.3
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1251.9 1328 50.0
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1247.6 1384 49.1
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1247.3 1368 49.2
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1246.5 1368 49.5
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1246.1 1372 50.0
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1245.3 1369 49.7
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1244.6 1369 49.7
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1241.9 1360 49.7
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1239.6 1375 49.8
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1236.9 1373 49.4
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1236.5 1367 49.3
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1234.9 1333 48.6
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1233.8 1379 48.9
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1231.5 1399 48.0
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1231.5 1398 48.1
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1230.3 1370 48.0
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1226.8 1390 50.1
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1226.1 1332 49.5
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1223.8 1365 49.5
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1221.8 1402 48.2
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1221.1 1335 51.9
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1215.7 1389 49.3
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1214.5 1363 47.8
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1206.4 1472 46.3
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1176.8 1395 47.3
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1174.1 1330 48.8
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1173.7 1398 45.6
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1163.3 1151 53.7
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1137.9 1338 46.7
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1125.5 1172 51.9
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 1124.4 1405 44.7
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 0.0e+00 1105.5 1169 51.2
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1100.5 1425 44.7
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1098.2 1361 45.5
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 0.0e+00 1094.3 1353 46.0
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1081.6 1364 45.3
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 8.6e-312 1073.9 1337 45.2
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 2.1e-300 1036.2 1373 44.6
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 2.0e-298 1029.6 1066 50.5
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 6.5e-294 1014.6 1022 51.4
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 9.4e-293 1010.7 977 53.8
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 1.0e-286 990.7 1048 51.3
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 1.0e-286 990.7 976 52.9
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 2.5e-285 986.1 1052 51.0
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 3.4e-250 869.4 1352 39.6
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.5e-242 844.0 943 49.4
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.3e-217 761.1 866 50.2
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 5.1e-214 749.2 728 52.7
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 3.7e-212 743.0 1469 34.9
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 3.9e-206 723.0 1485 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 1.0e-201 708.4 1474 33.4
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 3.1e-195 686.8 791 47.9
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 2.5e-189 667.2 728 52.1
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 1.1e-181 641.7 603 54.7
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 3.4e-178 630.2 1325 34.0
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 3.5e-170 603.6 586 52.0
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 3.6e-167 593.6 758 44.6
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 7.0e-163 579.3 578 51.7
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 1.1e-152 545.4 1259 31.8
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 1.1e-152 545.4 581 50.1
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.3e-148 531.9 776 39.2
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 4.3e-144 516.9 650 47.1
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 2.2e-132 478.0 880 37.2
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 7.8e-122 443.0 582 45.2
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 8.7e-89 333.2 385 50.4
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 1.6e-82 312.4 403 43.9
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 5.1e-81 307.4 307 52.4
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 3.3e-80 304.7 357 46.5
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 7.7e-77 293.5 1537 24.7
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.7e-68 265.8 306 44.1
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 1.1e-59 236.5 339 42.2
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 2.2e-55 222.2 1243 23.4
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.6e-53 216.1 300 40.3
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 7.2e-51 207.2 265 47.2
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 4.1e-46 191.4 262 39.7
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 9.1e-46 190.3 202 47.5
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 1.2e-45 189.9 213 47.9
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 1.6e-45 189.5 180 51.7
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 7.7e-45 187.2 254 44.9
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 8.5e-44 183.7 192 44.3
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 2.1e-42 179.1 241 45.6
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 3.0e-41 175.3 181 52.5
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-37 163.3 448 27.7
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 4.2e-35 154.8 166 47.6
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 3.4e-32 145.2 106 65.1
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 9.2e-30 137.1 90 70.0
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 2.9e-28 132.1 187 41.7
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 1.0e-25 123.6 211 37.9
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 3.1e-25 122.1 72 72.2
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 1.5e-24 119.8 74 67.6
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 7.5e-24 117.5 159 35.8
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 3.9e-20 105.1 159 39.6
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 4.3e-19 101.7 101 50.5
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 5.6e-19 101.3 146 40.4
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 8.9e-17 94.0 109 43.1
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 5.4e-14 84.7 130 38.5
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 5.4e-14 84.7 82 47.6
Hund09691 Selenicereus undatus HOM05D004810 ORTHO05D006272 1.7e-12 79.7 74 52.7
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 3.9e-12 78.6 78 50.0
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 3.9e-12 78.6 56 69.6
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 3.9e-12 78.6 56 69.6
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 5.6e-11 74.7 56 67.9
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 7.3e-11 74.3 47 70.2
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.1e-10 72.8 54 68.5
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.1e-10 72.8 58 67.2
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-09 67.8 42 59.5
FvH4_6g28340 Fragaria vesca HOM05D003050 ORTHO05D006272 1.2e-08 67.0 72 47.2
Actinidia06392 Actinidia chinensis HOM05D004810 ORTHO05D006272 5.8e-08 64.7 54 57.4
Lj6C229G10 Lonicera japonica HOM05D005323 ORTHO05D006820 2.4e-06 59.3 138 29.7
Zm00001eb064830 Zea mays HOM05D002561 ORTHO05D006466 7.1e-06 57.8 170 28.8


User provided reference genes

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