Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0167961 Helianthus annuus HOM05D006834 ORTHO05D008623 8.8e-235 816.6 426 100.0
Lsat_1_v5_gn_8_167261 Lactuca sativa HOM05D006834 ORTHO05D008623 7.2e-160 567.8 426 73.2
ECA236G2058 Erigeron canadensis HOM05D006834 ORTHO05D007803 2.7e-159 565.8 422 72.3
Dinv12076 Davidia involucrata HOM05D006834 ORTHO05D008623 1.6e-122 443.7 424 57.5
CSS0011680 Camellia sinensis var. sinensis HOM05D006834 ORTHO05D008623 2.5e-112 409.8 420 55.0
Cpa.g.sc57.31 Carica papaya HOM05D006834 ORTHO05D008623 3.3e-112 409.5 409 54.3
TAR636G0448 Trochodendron aralioides HOM05D006834 ORTHO05D008623 4.3e-112 409.1 412 54.6
GSVIVG01028237001 Vitis vinifera HOM05D006834 ORTHO05D008623 5.6e-112 408.7 434 52.8
Thecc.01G326600 Theobroma cacao HOM05D006834 ORTHO05D008623 9.5e-112 407.9 403 54.6
Actinidia21334 Actinidia chinensis HOM05D006834 ORTHO05D008623 1.4e-110 404.1 410 54.1
PGR042G0322 Punica granatum HOM05D006834 ORTHO05D008623 6.8e-110 401.7 403 54.8
Gohir.A12G119200 Gossypium hirsutum HOM05D006834 ORTHO05D008623 8.9e-110 401.4 404 53.2
QL12p035081 Quercus lobata HOM05D006834 ORTHO05D008623 8.9e-110 401.4 428 51.6
QL12p035100 Quercus lobata HOM05D006834 ORTHO05D008623 8.9e-110 401.4 428 51.6
Duzib138G0585 Durio zibethinus HOM05D006834 ORTHO05D008623 1.5e-109 400.6 402 54.2
Gorai.008G133900 Gossypium raimondii HOM05D006834 ORTHO05D008623 2.0e-109 400.2 404 53.2
TWI14G0919 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 4.4e-109 399.1 415 52.5
Ciclev10020225m.g Citrus clementina HOM05D006834 ORTHO05D008623 1.3e-108 397.5 425 53.4
CARHR172420 Cardamine hirsuta HOM05D006834 ORTHO05D008623 6.4e-108 395.2 407 52.6
Potri.002G186100 Populus trichocarpa HOM05D006834 ORTHO05D008623 6.4e-108 395.2 409 52.8
vmacro15952 Vaccinium macrocarpon HOM05D006834 ORTHO05D008623 1.1e-107 394.4 410 52.7
Sabra02G0148600 Salix brachista HOM05D006834 ORTHO05D008623 1.4e-107 394.0 421 52.5
Medtr7g110820 Medicago truncatula HOM05D006834 ORTHO05D008623 4.1e-107 392.5 418 50.5
Psat3g017400 Pisum sativum HOM05D006834 ORTHO05D008623 5.4e-107 392.1 424 51.2
TPR.G8370 Trifolium pratense HOM05D006834 ORTHO05D008623 5.4e-107 392.1 417 51.3
Cfa004921 Carpinus fangiana HOM05D006834 ORTHO05D008623 7.0e-107 391.7 407 52.3
Nn4g25303 Nelumbo nucifera HOM05D006834 ORTHO05D008623 2.0e-106 390.2 428 50.7
Atru.chr5.848 Acer truncatum HOM05D006834 ORTHO05D008623 3.5e-106 389.4 421 51.3
Lj1g0008019 Lotus japonicus HOM05D006834 ORTHO05D008623 3.5e-106 389.4 428 49.8
Cc01_g21740 Coffea canephora HOM05D006834 ORTHO05D008623 4.6e-106 389.0 410 52.9
Eucgr.A00997 Eucalyptus grandis HOM05D006834 ORTHO05D008623 6.0e-106 388.7 403 53.6
MBI18_g03845_MAGBIO Magnolia biondii HOM05D006834 ORTHO05D008623 7.8e-106 388.3 428 51.4
Aqoxy2G02436 Aquilegia oxysepala HOM05D006834 ORTHO05D008623 1.3e-105 387.5 416 51.2
TWI59G0932 Tripterygium wilfordii HOM05D006834 ORTHO05D008623 1.3e-105 387.5 425 50.6
Aa31LG10G16050 Aethionema arabicum HOM05D006834 ORTHO05D008623 1.7e-105 387.1 429 49.9
Lalb_Chr18g0046351 Lupinus albus HOM05D006834 ORTHO05D008623 1.5e-104 384.0 410 51.5
CiPaw.08G082000 Carya illinoinensis HOM05D006834 ORTHO05D008623 3.3e-104 382.9 437 49.2
PGSC0003DMG401001116 Solanum tuberosum HOM05D006834 ORTHO05D008623 1.6e-103 380.6 405 52.6
CsaV3_5G017580 Cucumis sativus L. HOM05D006834 ORTHO05D008623 2.1e-103 380.2 434 48.6
PSO210G3353 Papaver somniferum HOM05D006834 ORTHO05D008623 2.8e-103 379.8 428 51.4
PSO761G0283 Papaver somniferum HOM05D006834 ORTHO05D008623 3.6e-103 379.4 427 50.8
A09p54180 Brassica napus HOM05D006834 ORTHO05D008623 4.7e-103 379.0 407 50.9
Glyma.19G222100 Glycine max HOM05D006834 ORTHO05D008623 8.0e-103 378.3 435 48.7
CANSAT25G0194 Cannabis sativa HOM05D006834 ORTHO05D008623 1.4e-102 377.5 429 49.2
Phvul.001G218900 Phaseolus vulgaris HOM05D006834 ORTHO05D008623 4.0e-102 375.9 430 48.8
Sp5g01290 Schrenkiella parvula HOM05D006834 ORTHO05D008623 1.2e-101 374.4 408 50.7
ClCG01G007130 Citrullus lanatus HOM05D006834 ORTHO05D008623 1.5e-101 374.0 439 48.5
AL5G44880 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 2.0e-101 373.6 421 48.7
BolC8t51281H Brassica oleracea HOM05D006834 ORTHO05D008623 2.6e-101 373.2 407 50.4
BraA09t40830Z Brassica rapa HOM05D006834 ORTHO05D008623 2.6e-101 373.2 405 50.6
Oeu008276.1 Olea europaea HOM05D006834 ORTHO05D008623 2.6e-101 373.2 450 49.6
Rhsim01G0000800 Rhododendron simsii HOM05D006834 ORTHO05D008623 2.6e-101 373.2 432 48.4
Sopen01g030580 Solanum pennellii HOM05D006834 ORTHO05D008623 2.6e-101 373.2 416 51.2
C08p37040 Brassica napus HOM05D006834 ORTHO05D008623 3.4e-101 372.9 407 50.4
Thhalv10005996m.g Eutrema salsugineum HOM05D006834 ORTHO05D008623 3.4e-101 372.9 418 49.0
AL5G44760 Arabidopsis lyrata HOM05D006834 ORTHO05D008623 4.4e-101 372.5 426 49.3
VMungo1383G1632 Vigna mungo HOM05D006834 ORTHO05D008623 4.4e-101 372.5 402 50.5
Nitab4.5_0007915g0010 Nicotiana tabacum HOM05D006834 ORTHO05D008623 1.7e-100 370.5 404 51.5
Carub.0005s2883 Capsella rubella HOM05D006834 ORTHO05D008623 6.4e-100 368.6 372 53.5
MELO3C005199.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.9e-99 367.1 441 48.1
AT3G62080 Arabidopsis thaliana HOM05D006834 ORTHO05D008623 5.4e-99 365.5 431 48.5
Nitab4.5_0003092g0080 Nicotiana tabacum HOM05D006834 ORTHO05D008623 5.4e-99 365.5 397 51.6
CAN.G179.29 Capsicum annuum HOM05D006834 ORTHO05D008623 9.2e-99 364.8 426 50.5
Haze_05159 Corylus avellana HOM05D006834 ORTHO05D008623 9.2e-99 364.8 414 49.8
MD09G1291400 Malus domestica HOM05D006834 ORTHO05D008623 1.6e-98 364.0 441 46.7
Sed0016094 Sechium edule HOM05D006834 ORTHO05D008623 1.0e-97 361.3 438 47.5
BcaC07g40700 Brassica carinata HOM05D006834 ORTHO05D008623 8.9e-94 348.2 407 49.1
arahy.Tifrunner.gnm1.ann1.AJ9Z2K Arachis hypogaea HOM05D006834 ORTHO05D008623 9.9e-93 344.7 428 46.7
THA.LOC104817424 Tarenaya hassleriana HOM05D006834 ORTHO05D008623 2.9e-92 343.2 403 48.4
ATR0796G131 Amborella trichopoda HOM05D006834 ORTHO05D008623 2.3e-89 333.6 380 48.7
arahy.Tifrunner.gnm1.ann1.W0LIHS Arachis hypogaea HOM05D006834 ORTHO05D008623 3.9e-89 332.8 454 44.1
FAN19G1238 Fragaria x ananassa HOM05D006834 ORTHO05D008623 4.3e-88 329.3 417 44.1
AUR62032606 Chenopodium quinoa HOM05D006834 ORTHO05D008623 1.2e-87 327.8 424 45.8
FvH4_1g26150 Fragaria vesca HOM05D006834 ORTHO05D008623 2.8e-87 326.6 417 44.1
RcHm_v2.0_Chr3g0485641 Rosa chinensis HOM05D006834 ORTHO05D008623 2.8e-87 326.6 353 49.9
Migut.D01683 Erythranthe guttata HOM05D006834 ORTHO05D008623 4.7e-87 325.9 428 46.0
AUR62001071 Chenopodium quinoa HOM05D006834 ORTHO05D008623 2.4e-86 323.6 424 45.5
Ca_09251_v3 Cicer arietinum L. HOM05D006834 ORTHO05D008623 5.2e-86 322.4 300 55.0
SGA_v2.0_scaffold310G48195 Striga asiatica HOM05D006834 ORTHO05D008623 5.2e-86 322.4 438 46.1
FAN26G0527 Fragaria x ananassa HOM05D006834 ORTHO05D008623 2.6e-85 320.1 437 42.3
MSTRG.21731 Avicennia marina HOM05D006834 ORTHO05D008623 3.4e-85 319.7 406 46.3
FAN23G1444 Fragaria x ananassa HOM05D006834 ORTHO05D008623 3.8e-84 316.2 417 43.4
CDE01G0777 Ceratophyllum demersum HOM05D006834 ORTHO05D008623 5.1e-81 305.8 382 46.9
Ah.12g061380 Amaranthus hybridus HOM05D006834 ORTHO05D008623 8.7e-81 305.1 363 47.1
DCAR_012294 Daucus carota HOM05D006834 ORTHO05D008623 4.7e-79 299.3 275 54.2
Manes.05G007900 Manihot esculenta HOM05D006834 ORTHO05D008623 7.8e-74 282.0 324 50.0
EL10Ac9g22392 Beta vulgaris HOM05D006834 ORTHO05D008623 2.5e-72 276.9 337 45.1
COL.COLO4_23116 Corchorus olitorius HOM05D006834 ORTHO05D008623 3.6e-71 273.1 332 49.4
Gohir.D12G123000 Gossypium hirsutum HOM05D006834 ORTHO05D008623 1.2e-66 258.1 308 48.7
Pp3c3_29200 Physcomitrium patens HOM05D006834 ORTHO05D008623 1.1e-64 251.5 371 38.5
Os01g0286000 Oryza sativa ssp. japonica HOM05D006834 ORTHO05D008623 2.8e-63 246.9 392 38.5
Hma1.2p1_0408F.1_g146240 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 1.4e-62 244.6 287 53.3
AUR62031719 Chenopodium quinoa HOM05D006834 ORTHO05D008623 5.8e-61 239.2 420 38.6
Prupe.3G001500 Prunus persica HOM05D006834 ORTHO05D008623 2.2e-60 237.3 332 44.9
Mapoly0053s0040 Marchantia polymorpha HOM05D006834 ORTHO05D008623 4.9e-60 236.1 437 33.2
Zm00001eb129510 Zea mays HOM05D006834 ORTHO05D008623 7.4e-56 222.2 359 37.9
Sc05g0000050 Simmondsia chinensis HOM05D006834 ORTHO05D008623 4.0e-54 216.5 208 48.6
SMO339G0071 Selaginella moellendorffii HOM05D006834 ORTHO05D008623 4.9e-52 209.5 346 36.1
HPP92_001172 Vanilla planifolia HOM05D006834 ORTHO05D008623 1.4e-51 208.0 237 47.7
Solyc01g079060.4 Solanum lycopersicum HOM05D006834 ORTHO05D008623 2.5e-51 207.2 198 51.0
Peaxi162Scf00309g00622 Petunia axillaris HOM05D006834 ORTHO05D008623 4.1e-38 163.3 222 49.1
Peaxi162Scf00309g00627 Petunia axillaris HOM05D006834 ORTHO05D008623 1.2e-29 135.2 198 39.4
Hma1.2p1_1735F.1_g299880 Hydrangea macrophylla HOM05D006834 ORTHO05D008623 1.9e-27 127.9 92 60.9
MELO3C028884.2 Cucumis melo HOM05D006834 ORTHO05D008623 1.9e-19 101.3 123 46.3
MELO3C033776.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.4e-14 84.3 68 54.4
MELO3C032404.2 Cucumis melo HOM05D006834 ORTHO05D008623 2.0e-13 81.3 57 56.1
MELO3C005268.2 Cucumis melo HOM05D006834 ORTHO05D008623 8.5e-12 75.9 68 48.5
HanXRQChr05g0132131 Helianthus annuus HOM05D067228 ORTHO05D225856 8.8e-09 65.9 39 79.5
HanXRQChr12g0378251 Helianthus annuus HOM05D067228 ORTHO05D225804 8.8e-09 65.9 39 79.5
Sc05g0000060 Simmondsia chinensis HOM05D006834 ORTHO05D008623 1.4e-06 58.5 100 44.0


User provided reference genes

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