Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0167601 Helianthus annuus HOM05D012567 ORTHO05D004696 1.0e-174 616.7 324 100.0
HanXRQChr03g0074171 Helianthus annuus HOM05D012567 ORTHO05D004696 8.9e-70 268.1 312 51.3
Lsat_1_v5_gn_7_52640 Lactuca sativa HOM05D012567 ORTHO05D004696 4.4e-69 265.8 310 51.3
Lsat_1_v5_gn_7_52621 Lactuca sativa HOM05D012567 ORTHO05D004696 7.6e-69 265.0 307 50.2
HanXRQChr03g0074151 Helianthus annuus HOM05D012567 ORTHO05D004696 1.7e-68 263.8 312 49.4
HanXRQChr03g0074111 Helianthus annuus HOM05D012567 ORTHO05D004696 2.2e-68 263.5 312 49.4
Lsat_1_v5_gn_7_52661 Lactuca sativa HOM05D012567 ORTHO05D004696 9.6e-64 248.1 313 46.6
HanXRQChr09g0244301 Helianthus annuus HOM05D012567 ORTHO05D004696 6.9e-54 215.3 305 45.6
Lsat_1_v5_gn_7_52601 Lactuca sativa HOM05D012567 ORTHO05D004696 2.4e-51 206.8 311 43.1
HanXRQChr03g0074181 Helianthus annuus HOM05D012567 ORTHO05D004696 1.2e-45 188.0 232 52.2
ECA240G1251 Erigeron canadensis HOM05D012567 ORTHO05D004696 2.4e-43 180.3 251 44.2
TAR626G1729 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.2e-27 126.7 322 33.5
Cc06_g13850 Coffea canephora HOM05D012567 ORTHO05D004696 1.2e-26 124.8 307 33.9
CSS0022952 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 2.1e-26 124.0 317 32.8
CSS0038346 Camellia sinensis var. sinensis HOM05D012567 ORTHO05D004696 1.8e-25 120.9 317 32.2
MBI14_g30694_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 4.1e-22 109.8 301 31.2
MBI14_g30701_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-21 108.2 313 29.7
TAR383G0876 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.8e-20 103.2 302 31.1
TAR383G0345 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.2e-19 100.1 302 30.1
TAR383G0614 Trochodendron aralioides HOM05D004960 ORTHO05D004696 5.5e-19 99.4 302 30.8
MBI14_g30692_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.2e-18 98.2 297 29.3
MBI14_g30696_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 1.6e-18 97.8 287 31.0
TAR626G1223 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.6e-18 97.8 317 29.7
TAR626G0702 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.6e-18 96.7 297 27.9
TAR625G0177 Trochodendron aralioides HOM05D004960 ORTHO05D004696 1.1e-16 91.7 297 29.6
MD16G1263500 Malus domestica HOM05D004960 ORTHO05D004696 2.8e-15 87.0 298 27.9
RcHm_v2.0_Chr4g0404721 Rosa chinensis HOM05D004960 ORTHO05D004696 8.2e-15 85.5 294 26.5
Potri.010G250300 Populus trichocarpa HOM05D004960 ORTHO05D004696 2.4e-14 84.0 302 27.8
Aqoxy7G03208 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 4.1e-14 83.2 290 28.6
Manes.13G066000 Manihot esculenta HOM05D004960 ORTHO05D004696 9.1e-14 82.0 284 29.2
Prupe.1G095900 Prunus persica HOM05D004960 ORTHO05D004696 9.1e-14 82.0 297 26.9
Atru.chr7.532 Acer truncatum HOM05D004960 ORTHO05D004696 1.2e-13 81.6 295 28.1
RcHm_v2.0_Chr4g0404711 Rosa chinensis HOM05D004960 ORTHO05D004696 1.5e-13 81.3 304 28.0
Haze_10109 Corylus avellana HOM05D004960 ORTHO05D004696 2.6e-13 80.5 277 27.8
MBI14_g30695_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.6e-13 80.5 287 29.6
TWI34G0908 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 2.6e-13 80.5 234 26.9
Nn2g12577 Nelumbo nucifera HOM05D004960 ORTHO05D004696 3.4e-13 80.1 305 28.9
TWI63G1126 Tripterygium wilfordii HOM05D004960 ORTHO05D004696 3.4e-13 80.1 289 25.6
COL.COLO4_16060 Corchorus olitorius HOM05D004960 ORTHO05D004696 5.9e-13 79.3 282 23.4
Cpa.g.c29666.2 Carica papaya HOM05D004960 ORTHO05D004696 7.7e-13 79.0 296 25.0
Cfa013540 Carpinus fangiana HOM05D004960 ORTHO05D004696 7.7e-13 79.0 281 28.5
BcaB03g16662 Brassica carinata HOM05D004960 ORTHO05D004696 1.3e-12 78.2 290 25.2
Dinv41298 Davidia involucrata HOM05D004960 ORTHO05D004696 1.3e-12 78.2 104 44.2
MBI14_g30697_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 2.2e-12 77.4 308 27.3
Nn8g40270 Nelumbo nucifera HOM05D004960 ORTHO05D004696 2.2e-12 77.4 302 27.5
Ciclev10008947m.g Citrus clementina HOM05D004960 ORTHO05D004696 2.9e-12 77.0 289 25.3
Ciclev10008957m.g Citrus clementina HOM05D004960 ORTHO05D004696 6.5e-12 75.9 292 24.7
BcaC04g22889 Brassica carinata HOM05D004960 ORTHO05D004696 1.1e-11 75.1 290 25.5
C09p14170 Brassica napus HOM05D004960 ORTHO05D004696 1.1e-11 75.1 290 25.5
QL02p095902 Quercus lobata HOM05D004960 ORTHO05D004696 1.4e-11 74.7 300 26.7
Eucgr.J03153 Eucalyptus grandis HOM05D004960 ORTHO05D004696 1.9e-11 74.3 297 26.9
Hma1.2p1_0921F.1_g236760 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.9e-11 74.3 302 26.8
Hma1.2p1_0921F.1_g236792 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 1.9e-11 74.3 302 26.8
ATR0580G174 Amborella trichopoda HOM05D004960 ORTHO05D004696 2.5e-11 73.9 306 27.1
Aqoxy7G03205 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 3.2e-11 73.6 286 27.3
BcaC04g21483 Brassica carinata HOM05D004960 ORTHO05D004696 4.2e-11 73.2 288 26.4
C09p31280 Brassica napus HOM05D004960 ORTHO05D004696 4.2e-11 73.2 288 26.4
ATR0580G065 Amborella trichopoda HOM05D004960 ORTHO05D004696 5.5e-11 72.8 302 25.8
A09p12040 Brassica napus HOM05D004960 ORTHO05D004696 7.2e-11 72.4 290 25.2
BolC9t55984H Brassica oleracea HOM05D004960 ORTHO05D004696 7.2e-11 72.4 299 27.1
BraA09t36847Z Brassica rapa HOM05D004960 ORTHO05D004696 7.2e-11 72.4 290 25.2
Migut.J01407 Erythranthe guttata HOM05D004960 ORTHO05D004696 7.2e-11 72.4 305 25.9
BolC9t54315H Brassica oleracea HOM05D004960 ORTHO05D004696 9.4e-11 72.0 290 25.2
Cc06_g13870 Coffea canephora HOM05D004960 ORTHO05D004696 9.4e-11 72.0 292 26.7
Dinv43330 Davidia involucrata HOM05D004960 ORTHO05D004696 1.2e-10 71.6 220 29.1
Manes.14G147200 Manihot esculenta HOM05D004960 ORTHO05D004696 1.2e-10 71.6 303 26.1
Cpa.g.sc75.10 Carica papaya HOM05D004960 ORTHO05D004696 2.1e-10 70.9 237 26.6
Thhalv10022778m.g Eutrema salsugineum HOM05D004960 ORTHO05D004696 4.7e-10 69.7 312 28.8
Thecc.09G162700 Theobroma cacao HOM05D004960 ORTHO05D004696 4.7e-10 69.7 287 22.6
BraA07t27990Z Brassica rapa HOM05D004960 ORTHO05D004696 6.1e-10 69.3 291 24.7
TAR381G1261 Trochodendron aralioides HOM05D001062 ORTHO05D000884 6.1e-10 69.3 326 27.3
Carub.0003s3296 Capsella rubella HOM05D004960 ORTHO05D004696 7.9e-10 68.9 291 25.8
Cc06_g13860 Coffea canephora HOM05D004960 ORTHO05D004696 7.9e-10 68.9 326 24.8
AT2G18690 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 1.4e-09 68.2 301 26.2
BcaB07g31648 Brassica carinata HOM05D004960 ORTHO05D004696 1.4e-09 68.2 290 24.1
C03p59340 Brassica napus HOM05D004960 ORTHO05D004696 1.4e-09 68.2 292 25.7
Haze_25242 Corylus avellana HOM05D001062 ORTHO05D000884 1.4e-09 68.2 338 26.3
Aqoxy7G03204 Aquilegia oxysepala HOM05D004960 ORTHO05D004696 1.8e-09 67.8 287 26.5
Actinidia38795 Actinidia chinensis HOM05D004960 ORTHO05D004696 3.9e-09 66.6 302 24.5
Dinv41300 Davidia involucrata HOM05D004960 ORTHO05D004696 3.9e-09 66.6 296 24.7
Potri.002G074200 Populus trichocarpa HOM05D001062 ORTHO05D000884 3.9e-09 66.6 311 26.0
SalBow6G3435 Salvia bowleyana HOM05D001062 ORTHO05D000884 3.9e-09 66.6 235 27.2
TAR626G1419 Trochodendron aralioides HOM05D004960 ORTHO05D004696 3.9e-09 66.6 313 29.1
CARHR109270 Cardamine hirsuta HOM05D004960 ORTHO05D004696 5.1e-09 66.2 308 26.9
Eucgr.C00202 Eucalyptus grandis HOM05D004960 ORTHO05D004696 6.7e-09 65.9 291 25.4
Nn1g04315 Nelumbo nucifera HOM05D004960 ORTHO05D004696 6.7e-09 65.9 227 31.3
Lsat_1_v5_gn_5_30680 Lactuca sativa HOM05D001062 ORTHO05D000884 8.8e-09 65.5 326 25.5
Duzib168G0188 Durio zibethinus HOM05D004960 ORTHO05D004696 2.0e-08 64.3 244 24.6
HanXRQChr16g0510881 Helianthus annuus HOM05D001062 ORTHO05D000884 2.0e-08 64.3 307 27.0
Lsat_1_v5_gn_8_65701 Lactuca sativa HOM05D004960 ORTHO05D004696 2.0e-08 64.3 289 23.2
Actinidia38650 Actinidia chinensis HOM05D004960 ORTHO05D004696 2.6e-08 63.9 292 26.7
THA.LOC104803513 Tarenaya hassleriana HOM05D004960 ORTHO05D004696 2.6e-08 63.9 308 26.9
AT2G18680 Arabidopsis thaliana HOM05D004960 ORTHO05D004696 5.7e-08 62.8 293 27.0
C07p04050 Brassica napus HOM05D004960 ORTHO05D004696 7.4e-08 62.4 261 27.2
CiPaw.09G075600 Carya illinoinensis HOM05D001062 ORTHO05D000884 7.4e-08 62.4 237 28.3
AL3G52080 Arabidopsis lyrata HOM05D004960 ORTHO05D004696 9.7e-08 62.0 297 25.6
Lj4P839T38 Lonicera japonica HOM05D001062 ORTHO05D000884 9.7e-08 62.0 301 26.2
SGA_v2.0_scaffold69G23316 Striga asiatica HOM05D004960 ORTHO05D004696 9.7e-08 62.0 294 27.9
Cfa002899 Carpinus fangiana HOM05D001062 ORTHO05D000884 1.3e-07 61.6 334 25.4
Atru.chr4.912 Acer truncatum HOM05D001062 ORTHO05D000884 1.7e-07 61.2 307 25.7
BolC7t40796H Brassica oleracea HOM05D004960 ORTHO05D004696 1.7e-07 61.2 214 27.6
DCAR_014403 Daucus carota HOM05D001062 ORTHO05D000884 1.7e-07 61.2 292 24.0
Oeu024903.1 Olea europaea HOM05D004960 ORTHO05D004696 1.7e-07 61.2 297 24.2
A06p33120 Brassica napus HOM05D004960 ORTHO05D004696 3.7e-07 60.1 293 23.5
A07p01900 Brassica napus HOM05D004960 ORTHO05D004696 3.7e-07 60.1 279 25.1
Lj1g0010358 Lotus japonicus HOM05D001062 ORTHO05D000884 3.7e-07 60.1 308 25.3
MBI14_g30699_MAGBIO Magnolia biondii HOM05D004960 ORTHO05D004696 3.7e-07 60.1 295 25.4
CSS0018327 Camellia sinensis var. sinensis HOM05D004960 ORTHO05D004696 4.8e-07 59.7 306 23.9
Lsat_1_v5_gn_7_52700 Lactuca sativa HOM05D004960 ORTHO05D004696 4.8e-07 59.7 297 23.6
BraA04t16256Z Brassica rapa HOM05D004960 ORTHO05D004696 6.3e-07 59.3 292 25.7
Haze_05903 Corylus avellana HOM05D001062 ORTHO05D000884 6.3e-07 59.3 292 29.5
Migut.N03247 Erythranthe guttata HOM05D001062 ORTHO05D000884 8.2e-07 58.9 303 26.1
HanXRQChr05g0160811 Helianthus annuus HOM05D001062 ORTHO05D000884 8.2e-07 58.9 290 25.2
Prupe.1G095700 Prunus persica HOM05D004960 ORTHO05D004696 8.2e-07 58.9 298 23.2
PGSC0003DMG400034810 Solanum tuberosum HOM05D004960 ORTHO05D004696 8.2e-07 58.9 206 27.7
Atru.chr12.164 Acer truncatum HOM05D004960 ORTHO05D004696 1.4e-06 58.2 233 27.9
C04p38300 Brassica napus HOM05D004960 ORTHO05D004696 1.4e-06 58.2 292 26.4
Rhsim01G0010300 Rhododendron simsii HOM05D004960 ORTHO05D004696 1.4e-06 58.2 299 22.7
Sp3g32170 Schrenkiella parvula HOM05D004960 ORTHO05D004696 1.4e-06 58.2 217 28.1
Solyc07g006420.1 Solanum lycopersicum HOM05D004960 ORTHO05D004696 1.4e-06 58.2 295 23.1
BraA06t26242Z Brassica rapa HOM05D004960 ORTHO05D004696 1.8e-06 57.8 292 24.0
HPP92_010759 Vanilla planifolia HOM05D004960 ORTHO05D004696 1.8e-06 57.8 301 24.6
Atru.chr4.907 Acer truncatum HOM05D001062 ORTHO05D000884 2.4e-06 57.4 307 23.8
ClCG11G017010 Citrullus lanatus HOM05D001062 ORTHO05D000884 2.4e-06 57.4 309 25.6
Gorai.013G106700 Gossypium raimondii HOM05D001062 ORTHO05D000884 2.4e-06 57.4 307 24.1
Haze_25253 Corylus avellana HOM05D001062 ORTHO05D000884 3.1e-06 57.0 322 25.8
Migut.C01098 Erythranthe guttata HOM05D001062 ORTHO05D000884 3.1e-06 57.0 321 24.0
Gohir.D03G061900 Gossypium hirsutum HOM05D001062 ORTHO05D000884 3.1e-06 57.0 307 24.4
Cfa018388 Carpinus fangiana HOM05D001062 ORTHO05D000884 4.1e-06 56.6 307 23.8
MELO3C030213.2 Cucumis melo HOM05D001062 ORTHO05D000884 4.1e-06 56.6 245 26.9
Migut.L00876 Erythranthe guttata HOM05D001062 ORTHO05D000884 4.1e-06 56.6 302 23.5
Lsat_1_v5_gn_6_96960 Lactuca sativa HOM05D001062 ORTHO05D000884 4.1e-06 56.6 330 23.6
MD10G1010700 Malus domestica HOM05D001062 ORTHO05D000884 4.1e-06 56.6 307 25.1
PSO063G2425 Papaver somniferum HOM05D004960 ORTHO05D004696 4.1e-06 56.6 310 24.5
Thecc.09G163000 Theobroma cacao HOM05D004960 ORTHO05D004696 4.1e-06 56.6 213 21.1
Cfa000695 Carpinus fangiana HOM05D001062 ORTHO05D000884 5.3e-06 56.2 308 26.3
Haze_06094 Corylus avellana HOM05D001062 ORTHO05D000884 5.3e-06 56.2 308 26.0
Gohir.A02G068205 Gossypium hirsutum HOM05D001062 ORTHO05D000884 5.3e-06 56.2 301 24.9
Hma1.2p1_0921F.1_g236770 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 5.3e-06 56.2 268 23.5
Hma1.2p1_0921F.1_g236794 Hydrangea macrophylla HOM05D004960 ORTHO05D004696 5.3e-06 56.2 268 23.5
Oeu050116.1 Olea europaea HOM05D001062 ORTHO05D000884 5.3e-06 56.2 308 26.3
Rhsim01G0010200 Rhododendron simsii HOM05D004960 ORTHO05D004696 5.3e-06 56.2 318 24.8
SalBow6G0476 Salvia bowleyana HOM05D004960 ORTHO05D004696 5.3e-06 56.2 197 28.9
Psat6g039680 Pisum sativum HOM05D001062 ORTHO05D000884 7.0e-06 55.8 307 25.4
TAR626G0474 Trochodendron aralioides HOM05D004960 ORTHO05D004696 7.0e-06 55.8 133 32.3
CiPaw.03G121200 Carya illinoinensis HOM05D001062 ORTHO05D000884 9.1e-06 55.5 300 25.0
Prupe.1G095800 Prunus persica HOM05D004960 ORTHO05D004696 9.1e-06 55.5 106 31.1
Prupe.8G014200 Prunus persica HOM05D001062 ORTHO05D000884 9.1e-06 55.5 304 24.7


User provided reference genes

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