Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0167541 Helianthus annuus HOM05D004742 ORTHO05D005677 3.4e-115 418.3 207 100.0
Lsat_1_v5_gn_3_18001 Lactuca sativa HOM05D004742 ORTHO05D005677 5.0e-58 228.4 242 55.0
HanXRQChr17g0536221 Helianthus annuus HOM05D004742 ORTHO05D005677 3.6e-56 222.2 231 54.5
PGSC0003DMG400017538 Solanum tuberosum HOM05D004742 ORTHO05D005677 1.7e-37 160.2 248 42.3
Dinv25223 Davidia involucrata HOM05D004742 ORTHO05D005677 2.2e-37 159.8 223 46.2
Sopen08g025400 Solanum pennellii HOM05D004742 ORTHO05D005677 8.3e-37 157.9 251 41.4
Solyc08g076870.1 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.9e-36 156.8 251 41.4
Nitab4.5_0010403g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.0e-35 153.3 252 40.1
Nn1g00114 Nelumbo nucifera HOM05D004742 ORTHO05D005677 2.5e-33 146.4 229 41.0
Medtr5g030210 Medicago truncatula HOM05D004742 ORTHO05D005677 7.3e-33 144.8 245 42.9
Medtr5g430370 Medicago truncatula HOM05D004742 ORTHO05D005677 7.3e-33 144.8 245 42.9
TPR.G1023 Trifolium pratense HOM05D004742 ORTHO05D005677 7.3e-33 144.8 231 45.0
EL10Ac5g12098 Beta vulgaris HOM05D004742 ORTHO05D005677 9.5e-33 144.4 207 43.0
Thecc.03G226400 Theobroma cacao HOM05D004742 ORTHO05D005677 9.5e-33 144.4 229 41.5
Lsat_1_v5_gn_6_421 Lactuca sativa HOM05D004742 ORTHO05D005677 1.6e-32 143.7 235 40.0
Phvul.002G140700 Phaseolus vulgaris HOM05D004742 ORTHO05D005677 2.1e-32 143.3 231 42.4
CANSAT21G2184 Cannabis sativa HOM05D004742 ORTHO05D005677 4.7e-32 142.1 226 40.7
Duzib205G0563 Durio zibethinus HOM05D004742 ORTHO05D005677 6.2e-32 141.7 231 41.6
COL.COLO4_17015 Corchorus olitorius HOM05D004742 ORTHO05D005677 1.8e-31 140.2 226 40.7
ClCG10G001520 Citrullus lanatus HOM05D004742 ORTHO05D005677 2.3e-31 139.8 233 42.9
Hma1.2p1_0303F.1_g119030 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 2.3e-31 139.8 234 41.9
MELO3C027362.2 Cucumis melo HOM05D004742 ORTHO05D005677 3.1e-31 139.4 224 41.1
Gohir.A08G156100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 4.0e-31 139.0 232 39.7
Ah.12g055130 Amaranthus hybridus HOM05D004742 ORTHO05D005677 5.2e-31 138.7 214 40.7
Gohir.D08G176700 Gossypium hirsutum HOM05D004742 ORTHO05D005677 5.2e-31 138.7 228 39.9
Gorai.004G184600 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.2e-31 138.7 228 39.9
VMungo1215G1913 Vigna mungo HOM05D004742 ORTHO05D005677 5.2e-31 138.7 232 41.4
Gohir.A09G199100 Gossypium hirsutum HOM05D004742 ORTHO05D005677 8.9e-31 137.9 230 40.0
Ca_06086_v3 Cicer arietinum L. HOM05D004742 ORTHO05D005677 2.0e-30 136.7 225 42.7
Duzib084G1225 Durio zibethinus HOM05D004742 ORTHO05D005677 2.6e-30 136.3 232 39.2
Actinidia14802 Actinidia chinensis HOM05D004742 ORTHO05D005677 3.4e-30 136.0 218 40.8
Lalb_Chr09g0325611 Lupinus albus HOM05D004742 ORTHO05D005677 4.4e-30 135.6 234 38.5
arahy.Tifrunner.gnm1.ann1.EZQY9P Arachis hypogaea HOM05D004742 ORTHO05D005677 5.8e-30 135.2 228 41.7
arahy.Tifrunner.gnm1.ann1.RMRK9P Arachis hypogaea HOM05D004742 ORTHO05D005677 5.8e-30 135.2 228 41.7
Gorai.006G216900 Gossypium raimondii HOM05D004742 ORTHO05D005677 5.8e-30 135.2 231 39.0
SalBow6G3311 Salvia bowleyana HOM05D004742 ORTHO05D005677 9.8e-30 134.4 233 39.5
CSS0004262 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.3e-29 134.0 230 39.6
CSS0028083 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.7e-29 133.7 230 39.6
TWI60G1233 Tripterygium wilfordii HOM05D004742 ORTHO05D005677 1.7e-29 133.7 233 42.1
Glyma.01G017800 Glycine max HOM05D004742 ORTHO05D005677 2.2e-29 133.3 243 39.1
Glyma.09G205100 Glycine max HOM05D004742 ORTHO05D005677 2.2e-29 133.3 244 37.7
TAR636G0473 Trochodendron aralioides HOM05D004742 ORTHO05D005677 3.7e-29 132.5 212 40.6
Migut.E00942 Erythranthe guttata HOM05D004742 ORTHO05D005677 4.9e-29 132.1 232 39.7
Nitab4.5_0000529g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 4.9e-29 132.1 254 36.6
Duzib068G0638 Durio zibethinus HOM05D004742 ORTHO05D005677 6.4e-29 131.7 228 39.0
Gohir.A11G030800 Gossypium hirsutum HOM05D004742 ORTHO05D005677 6.4e-29 131.7 230 40.4
Lj2g0023551 Lotus japonicus HOM05D004742 ORTHO05D005677 6.4e-29 131.7 224 39.7
TAR374G0395 Trochodendron aralioides HOM05D004742 ORTHO05D005677 6.4e-29 131.7 221 38.9
Manes.17G011300 Manihot esculenta HOM05D004742 ORTHO05D005677 8.3e-29 131.3 235 37.9
Gohir.D09G193400 Gossypium hirsutum HOM05D004742 ORTHO05D005677 1.1e-28 131.0 231 38.1
Actinidia03372 Actinidia chinensis HOM05D004742 ORTHO05D005677 1.9e-28 130.2 237 37.6
CsaV3_3G001600 Cucumis sativus L. HOM05D004742 ORTHO05D005677 2.4e-28 129.8 229 39.3
PGR031G2228 Punica granatum HOM05D004742 ORTHO05D005677 4.1e-28 129.0 255 37.6
RcHm_v2.0_Chr7g0209881 Rosa chinensis HOM05D004742 ORTHO05D005677 5.4e-28 128.6 234 39.7
Duzib084G0476 Durio zibethinus HOM05D004742 ORTHO05D005677 9.2e-28 127.9 232 37.1
MD06G1035300 Malus domestica HOM05D004742 ORTHO05D005677 2.7e-27 126.3 246 36.2
Oeu006253.1 Olea europaea HOM05D004742 ORTHO05D005677 2.7e-27 126.3 231 37.7
Rhsim07G0128300 Rhododendron simsii HOM05D004742 ORTHO05D005677 3.5e-27 125.9 202 42.1
FvH4_5g22200 Fragaria vesca HOM05D004742 ORTHO05D005677 4.6e-27 125.6 238 38.2
HanXRQChr12g0360911 Helianthus annuus HOM05D004742 ORTHO05D005677 6.0e-27 125.2 228 39.0
FAN04G2756 Fragaria x ananassa HOM05D004742 ORTHO05D005677 7.8e-27 124.8 232 40.5
FAN08G0406 Fragaria x ananassa HOM05D004742 ORTHO05D005677 7.8e-27 124.8 232 40.5
QL12p005003 Quercus lobata HOM05D004742 ORTHO05D005677 1.0e-26 124.4 221 38.9
Cfa012451 Carpinus fangiana HOM05D004742 ORTHO05D005677 1.7e-26 123.6 221 38.9
FAN13G2654 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.7e-26 123.6 232 40.5
Prupe.5G034500 Prunus persica HOM05D004742 ORTHO05D005677 3.0e-26 122.9 239 38.1
Gorai.007G032300 Gossypium raimondii HOM05D004742 ORTHO05D005677 3.9e-26 122.5 229 40.2
Actinidia25968 Actinidia chinensis HOM05D004742 ORTHO05D005677 5.1e-26 122.1 244 36.5
CiPaw.12G064300 Carya illinoinensis HOM05D004742 ORTHO05D005677 6.6e-26 121.7 222 36.5
Psat2g136480 Pisum sativum HOM05D004742 ORTHO05D005677 8.6e-26 121.3 232 39.7
DCAR_032208 Daucus carota HOM05D004742 ORTHO05D005677 1.1e-25 120.9 204 41.7
Ciclev10016629m.g Citrus clementina HOM05D004742 ORTHO05D005677 1.5e-25 120.6 227 39.2
MD16G1273500 Malus domestica HOM05D004742 ORTHO05D005677 1.5e-25 120.6 240 38.8
MSTRG.12162 Avicennia marina HOM05D004742 ORTHO05D005677 1.9e-25 120.2 225 35.6
CiPaw.11G094200 Carya illinoinensis HOM05D004742 ORTHO05D005677 1.9e-25 120.2 236 36.9
FAN18G2180 Fragaria x ananassa HOM05D004742 ORTHO05D005677 1.9e-25 120.2 238 35.7
Gohir.D11G029500 Gossypium hirsutum HOM05D004742 ORTHO05D005677 3.3e-25 119.4 229 39.7
Manes.15G188900 Manihot esculenta HOM05D004742 ORTHO05D005677 4.3e-25 119.0 238 36.6
Lalb_Chr16g0381321 Lupinus albus HOM05D004742 ORTHO05D005677 7.3e-25 118.2 200 40.0
CSS0042903 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 1.2e-24 117.5 211 37.9
Potri.001G141600 Populus trichocarpa HOM05D004742 ORTHO05D005677 1.2e-24 117.5 237 36.3
Lj3A410T15 Lonicera japonica HOM05D004742 ORTHO05D005677 3.6e-24 115.9 213 41.3
Eucgr.D02205 Eucalyptus grandis HOM05D004742 ORTHO05D005677 4.7e-24 115.5 234 35.9
Sabra03G0062000 Salix brachista HOM05D004742 ORTHO05D001134 4.7e-24 115.5 216 39.4
Atru.chr6.1683 Acer truncatum HOM05D004742 ORTHO05D005677 6.2e-24 115.2 221 38.0
Aa31LG9G15210 Aethionema arabicum HOM05D004742 ORTHO05D005677 1.1e-23 114.4 232 35.8
SGA_v2.0_scaffold6G03142 Striga asiatica HOM05D004742 ORTHO05D005677 1.4e-23 114.0 227 36.6
Haze_08216 Corylus avellana HOM05D004742 ORTHO05D005677 2.6e-22 109.8 221 37.1
Rhsim11G0016100 Rhododendron simsii HOM05D004742 ORTHO05D005677 2.6e-22 109.8 222 37.4
TAR629G2541 Trochodendron aralioides HOM05D004742 ORTHO05D005677 2.6e-22 109.8 195 39.0
Potri.003G092700 Populus trichocarpa HOM05D004742 ORTHO05D005677 3.4e-22 109.4 233 36.1
SGA_v2.0_scaffold20G09271 Striga asiatica HOM05D004742 ORTHO05D005677 5.8e-22 108.6 223 36.8
EL10Ac5g12097 Beta vulgaris HOM05D004742 ORTHO05D005677 7.5e-22 108.2 193 39.9
Sed0001883 Sechium edule HOM05D004742 ORTHO05D005677 2.9e-21 106.3 229 37.6
Sp4g17420 Schrenkiella parvula HOM05D004742 ORTHO05D005677 3.2e-20 102.8 217 34.1
Aqoxy3G02336 Aquilegia oxysepala HOM05D004742 ORTHO05D005677 5.4e-20 102.1 248 33.9
THA.LOC104814447 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 1.2e-19 100.9 231 34.2
DCAR_004297 Daucus carota HOM05D004742 ORTHO05D005677 1.6e-19 100.5 221 37.6
CSS0044674 Camellia sinensis var. sinensis HOM05D004742 ORTHO05D005677 2.1e-19 100.1 207 34.8
DCAR_008263 Daucus carota HOM05D004742 ORTHO05D005677 2.7e-19 99.8 246 35.4
CARHR032080 Cardamine hirsuta HOM05D004742 ORTHO05D005677 6.6e-18 95.1 226 32.3
THA.LOC104812742 Tarenaya hassleriana HOM05D004742 ORTHO05D005677 6.6e-18 95.1 228 29.8
Thhalv10008795m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 8.6e-18 94.7 226 33.6
Hma1.2p1_0574F.1_g181490 Hydrangea macrophylla HOM05D004742 ORTHO05D005677 1.1e-17 94.4 261 33.3
Thhalv10017262m.g Eutrema salsugineum HOM05D004742 ORTHO05D005677 1.5e-17 94.0 205 34.6
Nitab4.5_0008566g0010 Nicotiana tabacum HOM05D004742 ORTHO05D005677 5.6e-17 92.0 212 35.4
Cc08_g02870 Coffea canephora HOM05D004742 ORTHO05D005677 1.2e-16 90.9 257 32.7
Aa31LG2G13280 Aethionema arabicum HOM05D004742 ORTHO05D005677 2.8e-16 89.7 231 32.0
A05p10550 Brassica napus HOM05D004742 ORTHO05D005677 3.6e-16 89.4 206 35.4
BraA05t19993Z Brassica rapa HOM05D004742 ORTHO05D005677 3.6e-16 89.4 206 35.4
AUR62018706 Chenopodium quinoa HOM05D004742 ORTHO05D005677 3.6e-16 89.4 211 32.7
Sp1g28270 Schrenkiella parvula HOM05D004742 ORTHO05D005677 1.1e-15 87.8 223 34.5
Carub.0004s1689 Capsella rubella HOM05D004742 ORTHO05D005677 1.8e-15 87.0 204 32.4
AT1G32690 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 6.8e-15 85.1 225 31.6
BcaC02g11593 Brassica carinata HOM05D004742 ORTHO05D005677 2.0e-14 83.6 209 34.9
MBI04_g46668_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 3.4e-14 82.8 193 34.7
AL1G46920 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 4.4e-14 82.4 227 30.8
BcaC01g01725 Brassica carinata HOM05D004742 ORTHO05D005677 4.4e-14 82.4 221 34.4
C03p72460 Brassica napus HOM05D004742 ORTHO05D005677 4.4e-14 82.4 221 34.4
MBI04_g25303_MAGBIO Magnolia biondii HOM05D004742 ORTHO05D005677 7.6e-14 81.6 192 36.5
BcaB03g13715 Brassica carinata HOM05D004742 ORTHO05D005677 1.3e-13 80.9 223 33.2
AT2G35200 Arabidopsis thaliana HOM05D004742 ORTHO05D005677 2.9e-13 79.7 201 30.8
AL4G31210 Arabidopsis lyrata HOM05D004742 ORTHO05D005677 3.8e-13 79.3 205 32.2
PSO210G7694 Papaver somniferum HOM05D004742 ORTHO05D005677 3.8e-13 79.3 94 47.9
HPP92_014611 Vanilla planifolia HOM05D004742 ORTHO05D005677 3.8e-13 79.3 205 32.7
PGSC0003DMG400017843 Solanum tuberosum HOM05D004742 ORTHO05D005677 6.4e-13 78.6 103 42.7
C04p13600 Brassica napus HOM05D004742 ORTHO05D005677 8.4e-13 78.2 206 34.0
BolC3t19547H Brassica oleracea HOM05D004742 ORTHO05D005677 8.4e-13 78.2 221 33.5
Sopen08g001110 Solanum pennellii HOM05D004742 ORTHO05D005677 8.4e-13 78.2 114 43.9
CDE06G1944 Ceratophyllum demersum HOM05D003296 ORTHO05D003720 1.1e-12 77.8 199 33.7
BolC4t22951H Brassica oleracea HOM05D004742 ORTHO05D005677 1.4e-12 77.4 205 34.1
Nitab4.5_0006434g0030 Nicotiana tabacum HOM05D004742 ORTHO05D005677 2.4e-12 76.6 202 34.2
A05p24650 Brassica napus HOM05D004742 ORTHO05D005677 3.2e-12 76.3 217 31.8
BraA05t21351Z Brassica rapa HOM05D004742 ORTHO05D005677 3.2e-12 76.3 217 31.8
Lj8P301T9 Lonicera japonica HOM05D004742 ORTHO05D005677 4.2e-12 75.9 126 38.9
BcaC05g27832 Brassica carinata HOM05D004742 ORTHO05D005677 9.2e-12 74.7 205 32.7
C05p38300 Brassica napus HOM05D004742 ORTHO05D005677 9.2e-12 74.7 205 32.7
BolC5t32562H Brassica oleracea HOM05D004742 ORTHO05D005677 9.2e-12 74.7 205 32.7
Carub.0001s3103 Capsella rubella HOM05D004742 ORTHO05D005677 1.2e-11 74.3 223 31.4
Solyc08g005090.2 Solanum lycopersicum HOM05D004742 ORTHO05D005677 1.2e-11 74.3 111 42.3
CARHR129360 Cardamine hirsuta HOM05D004742 ORTHO05D005677 2.7e-11 73.2 184 29.9
HPP92_020967 Vanilla planifolia HOM05D004742 ORTHO05D005677 7.8e-11 71.6 201 33.3
ECA233G6051 Erigeron canadensis HOM05D007880 ORTHO05D003386 3.6e-08 62.8 229 29.7
Peaxi162Scf00045g00023 Petunia axillaris HOM05D004742 ORTHO05D005677 4.7e-08 62.4 162 30.9
TAR375G0192 Trochodendron aralioides HOM05D004742 ORTHO05D005677 4.7e-08 62.4 192 30.7
CDE11G0293 Ceratophyllum demersum HOM05D004742 ORTHO05D005677 2.4e-07 60.1 146 34.9
Zm00001eb251250 Zea mays HOM05D004742 ORTHO05D005677 4.0e-07 59.3 81 39.5
Os02g0693000 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 9.0e-07 58.2 81 39.5
ATR0665G540 Amborella trichopoda HOM05D004742 ORTHO05D005677 1.2e-06 57.8 91 39.6
AUR62007299 Chenopodium quinoa HOM05D004742 ORTHO05D005677 2.6e-06 56.6 102 39.2
Os04g0591300 Oryza sativa ssp. japonica HOM05D004742 ORTHO05D005677 2.6e-06 56.6 187 28.9
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 9.9e-06 54.7 178 26.4


User provided reference genes

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