Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 0.0e+00 1107.0 674 100.0
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 5.9e-225 784.6 676 69.8
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 7.3e-191 671.4 672 64.7
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 3.9e-184 649.0 702 59.0
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.4e-181 640.6 696 58.0
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.4e-181 640.6 695 57.7
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 5.6e-175 618.6 714 60.1
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 2.8e-174 616.3 704 59.4
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 1.5e-172 610.5 687 56.5
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 1.7e-171 607.1 725 54.2
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 2.3e-168 596.7 711 57.8
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 3.9e-168 595.9 691 55.0
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 9.6e-167 591.3 706 54.7
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 2.8e-166 589.7 706 54.4
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 3.6e-166 589.3 709 55.3
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 2.6e-164 583.2 749 52.7
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 5.8e-164 582.0 704 55.0
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 9.9e-164 581.3 696 54.9
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 1.1e-162 577.8 691 53.0
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 1.4e-162 577.4 706 54.2
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 2.4e-162 576.6 693 53.4
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 4.2e-162 575.9 708 53.2
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.0e-160 571.2 720 52.6
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 1.5e-159 567.4 717 52.9
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 1.1e-157 561.2 716 52.0
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.4e-157 560.8 711 52.2
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 3.1e-157 559.7 700 55.0
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 2.6e-156 556.6 712 53.5
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 2.6e-156 556.6 854 47.0
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 5.8e-156 555.4 705 53.3
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 1.1e-154 551.2 680 55.3
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 1.4e-154 550.8 722 53.5
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 1.9e-154 550.4 743 51.4
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 5.4e-154 548.9 691 50.9
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 9.3e-154 548.1 693 53.4
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 2.1e-153 547.0 708 52.4
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 2.1e-153 547.0 713 51.2
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 7.9e-153 545.0 710 52.0
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 5.1e-152 542.3 700 52.6
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 1.1e-151 541.2 716 49.7
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 1.9e-151 540.4 698 55.3
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 5.6e-151 538.9 699 49.6
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 9.6e-151 538.1 702 51.4
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 1.6e-150 537.3 683 51.2
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 2.6e-148 530.0 706 53.7
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 4.5e-148 529.3 687 51.2
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 5.8e-148 528.9 699 49.5
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 9.9e-148 528.1 697 55.2
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 1.7e-147 527.3 705 49.5
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.7e-147 527.3 685 56.1
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 4.9e-147 525.8 698 54.9
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 4.9e-147 525.8 696 51.3
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 6.4e-147 525.4 708 53.4
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.4e-146 524.2 703 52.1
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 3.2e-146 523.1 686 51.2
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 4.2e-146 522.7 686 57.0
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 4.2e-146 522.7 714 50.6
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 5.5e-146 522.3 704 52.7
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 7.1e-146 521.9 721 49.4
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 3.9e-144 516.2 700 53.6
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-143 514.2 676 49.9
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.5e-143 514.2 719 48.7
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.5e-143 513.5 703 52.2
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.3e-143 512.7 703 52.3
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 5.6e-143 512.3 692 49.1
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.1e-142 510.4 702 54.8
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 2.1e-142 510.4 692 51.4
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 2.1e-142 510.4 689 55.7
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 2.8e-142 510.0 699 50.6
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 4.8e-142 509.2 703 52.3
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 6.2e-142 508.8 691 54.8
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 8.2e-142 508.4 691 55.4
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 1.4e-141 507.7 693 49.4
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 2.4e-141 506.9 691 54.7
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.4e-141 506.9 703 52.3
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 4.0e-141 506.1 691 54.7
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 2.0e-140 503.8 690 54.8
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 8.4e-139 498.4 693 55.8
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 9.3e-138 495.0 675 48.4
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 2.7e-137 493.4 681 49.3
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 7.9e-137 491.9 681 53.7
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.3e-136 491.1 680 50.1
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.3e-136 490.3 727 50.6
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 3.9e-136 489.6 693 53.2
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 5.1e-136 489.2 721 47.4
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 9.7e-135 485.0 703 53.6
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.3e-134 484.6 695 48.9
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 2.2e-134 483.8 686 53.8
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 2.2e-134 483.8 692 48.4
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 1.1e-133 481.5 695 49.1
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 5.3e-133 479.2 692 49.4
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 6.9e-133 478.8 694 49.9
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 9.0e-133 478.4 707 47.9
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 2.6e-132 476.9 773 47.7
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 8.5e-131 471.9 711 47.5
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 4.2e-130 469.5 695 51.7
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.8e-128 464.2 700 52.6
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 2.3e-128 463.8 699 48.8
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 2.3e-128 463.8 686 46.2
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 6.7e-128 462.2 687 52.1
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 8.8e-128 461.8 691 50.2
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 8.8e-128 461.8 460 58.7
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 8.8e-128 461.8 696 46.6
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 1.5e-127 461.1 700 54.0
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 4.3e-127 459.5 709 51.2
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 8.2e-126 455.3 690 49.9
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 1.4e-125 454.5 677 52.3
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 4.1e-125 453.0 719 49.8
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 7.7e-124 448.7 697 52.7
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 1.0e-123 448.4 728 45.6
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 2.2e-123 447.2 694 52.2
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 5.5e-122 442.6 651 53.1
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-121 441.4 682 49.6
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 2.0e-119 434.1 607 52.7
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 2.0e-119 434.1 656 50.8
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 5.7e-119 432.6 712 49.6
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.7e-118 431.0 600 51.2
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 6.3e-118 429.1 625 48.0
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 3.1e-117 426.8 699 44.5
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 9.1e-117 425.2 687 48.6
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 1.1e-114 418.3 709 48.5
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 5.5e-114 416.0 610 48.4
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 4.7e-113 412.9 610 48.0
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 5.2e-112 409.5 714 42.9
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 1.5e-111 407.9 455 56.5
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 2.8e-110 403.7 722 41.3
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 4.8e-110 402.9 688 42.4
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 5.3e-109 399.4 699 42.3
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 3.4e-103 380.2 416 64.7
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 5.3e-101 372.9 688 41.0
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 2.2e-99 367.5 739 40.7
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 1.1e-98 365.2 677 40.6
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 1.2e-95 355.1 696 43.7
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 1.4e-93 348.2 282 68.4
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.6e-81 308.1 271 64.9
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 2.0e-79 301.2 276 64.5
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 2.2e-78 297.7 606 39.6
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 8.6e-75 285.8 720 34.3
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 1.6e-68 265.0 356 53.7
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 7.8e-60 236.1 249 59.4
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 6.2e-57 226.5 286 52.1
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 4.4e-55 220.3 264 50.0
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 5.8e-55 219.9 388 43.3
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 9.0e-48 196.1 668 32.8
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 2.4e-45 188.0 217 49.3
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.7e-43 181.8 393 39.4
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 1.6e-36 158.7 110 76.4
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.3e-30 139.0 401 33.9
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 3.0e-27 127.9 183 49.2
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.3e-25 122.5 126 52.4
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 1.6e-25 122.1 89 71.9
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 6.5e-22 110.2 109 54.1
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 9.3e-21 106.3 173 43.9
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 3.5e-20 104.4 375 29.9
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 4.6e-20 104.0 254 35.8
HanXRQChr05g0138421 Helianthus annuus HOM05D048109 ORTHO05D004303 6.1e-20 103.6 71 71.8
HanXRQChr08g0230051 Helianthus annuus HOM05D048109 ORTHO05D004303 6.1e-20 103.6 71 71.8
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 1.6e-17 95.5 160 47.5
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 6.3e-17 93.6 94 54.3
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 4.5e-15 87.4 249 31.7
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 1.3e-14 85.9 82 57.3
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 5.0e-14 84.0 107 51.4
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 4.2e-13 80.9 296 30.7
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 9.4e-13 79.7 84 63.1
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 1.2e-12 79.3 205 32.2
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.6e-12 79.0 88 52.3
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.5e-10 71.6 59 67.8
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 3.3e-10 71.2 210 35.7
arahy.Tifrunner.gnm1.ann1.W0C6E5 Arachis hypogaea HOM05D000200 ORTHO05D000262 1.3e-06 59.3 96 44.8


User provided reference genes

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