Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1473.0 721 100.0
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1382.9 722 93.5
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1381.3 722 92.9
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1325.1 731 87.4
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1322.4 729 87.4
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1319.3 731 87.3
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1319.3 733 87.0
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1318.1 731 86.5
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1318.1 731 87.1
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1314.3 735 87.2
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1313.9 731 87.0
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1312.7 737 86.3
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1311.2 733 85.9
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1309.3 721 87.5
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1309.3 732 86.7
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1308.1 728 87.1
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1308.1 732 86.3
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1307.7 723 89.1
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 734 85.6
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 732 86.2
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1306.6 722 87.5
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1306.6 733 85.9
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1306.2 728 86.8
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1305.0 731 85.9
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1305.0 732 86.9
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1304.3 735 86.7
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1302.7 724 87.3
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1302.3 732 86.2
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1301.2 732 85.8
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1301.2 731 86.9
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1300.4 733 85.7
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1300.0 734 85.4
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1299.3 730 85.1
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1298.9 733 85.4
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1298.9 731 85.6
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1298.1 726 85.5
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1298.1 734 85.6
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1297.0 773 82.4
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1296.2 732 84.6
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1294.6 727 86.2
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1294.6 731 84.5
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1294.3 697 88.7
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1293.9 735 84.1
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1293.5 721 86.4
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1293.1 728 85.2
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1291.9 734 85.1
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1291.9 731 85.2
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1291.2 725 85.2
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1290.8 728 84.3
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1290.0 733 84.4
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1289.6 728 84.2
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1289.6 728 84.2
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1289.2 730 84.2
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1288.5 723 86.2
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1287.3 734 85.1
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1286.9 732 84.7
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1286.2 734 84.6
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1282.3 732 84.8
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1281.5 733 84.6
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1281.5 726 83.7
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1280.8 726 84.4
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1280.8 726 84.6
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1278.8 726 84.2
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1276.9 731 84.7
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1276.2 726 84.2
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 726 83.9
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 774 81.1
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1273.8 728 83.5
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1273.8 734 83.8
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1273.5 730 84.2
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1273.5 729 83.4
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1273.5 733 83.5
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1272.3 729 83.3
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1272.3 733 83.8
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1272.3 733 83.4
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1271.9 727 83.8
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1271.9 733 83.4
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1270.8 726 83.5
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1269.2 725 84.3
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1268.4 782 80.3
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1267.3 728 83.2
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 733 83.5
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1266.5 728 83.4
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1266.5 779 80.0
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1266.5 779 80.0
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1265.0 727 83.1
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 749 83.0
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1263.8 734 83.0
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1263.4 726 83.1
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 725 83.9
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1263.1 733 83.2
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1261.9 730 83.8
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1244.6 819 76.1
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1244.2 732 83.5
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1239.6 738 81.7
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1239.2 738 81.6
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1238.0 737 81.5
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1237.2 732 83.1
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1224.5 663 88.2
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1220.7 725 81.0
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1214.5 735 79.6
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1213.4 697 82.4
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1205.7 733 78.3
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1203.3 750 77.9
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1200.3 727 80.7
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1199.1 735 79.7
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1195.6 735 79.3
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1193.3 659 86.8
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1179.1 721 77.9
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1172.9 656 85.7
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1160.2 733 75.7
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1157.1 741 74.9
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1141.3 694 78.5
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1135.2 693 77.2
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1134.0 616 88.5
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1129.4 616 88.5
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1119.4 734 74.1
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 0.0e+00 1102.4 585 90.8
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1076.2 733 70.4
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.5e-306 1055.8 730 72.1
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 2.1e-305 1052.0 698 73.1
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 1.5e-298 1029.2 752 70.5
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.3e-283 978.8 704 69.7
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.6e-281 972.6 732 64.5
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 9.0e-280 966.8 726 65.0
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 9.9e-279 963.4 726 63.8
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 6.9e-256 887.5 690 61.7
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 1.2e-255 886.7 669 63.7
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 3.2e-253 878.6 569 75.6
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 4.2e-253 878.2 653 64.6
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 7.2e-253 877.5 505 85.1
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 7.4e-250 867.5 694 60.4
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.1e-234 817.0 717 56.3
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 3.3e-234 815.5 502 80.3
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 2.6e-226 789.3 783 52.9
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 2.6e-218 762.7 417 88.0
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 1.4e-203 713.8 710 52.1
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.4e-184 650.6 422 74.6
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 3.9e-158 562.8 377 71.6
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 2.1e-156 557.0 485 62.5
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 4.5e-154 549.3 303 88.1
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.2e-144 516.5 357 70.6
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.1e-141 508.1 317 78.9
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 1.2e-138 498.0 349 75.4
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.9e-126 456.4 323 68.7
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.7e-113 414.5 287 69.3
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.1e-107 395.2 314 62.7
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 1.3e-92 345.1 183 84.7
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.4e-91 339.7 220 72.3
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 2.7e-82 310.8 422 45.7
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 4.6e-74 283.5 353 49.0
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-72 278.9 215 65.6
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 7.3e-72 276.2 168 73.8
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 1.4e-67 261.9 201 67.2
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.7e-66 257.7 216 59.7
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 2.4e-46 191.4 201 54.2
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.4e-43 182.2 219 43.4
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.9e-43 181.8 131 62.6
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 3.0e-41 174.5 101 77.2
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.9e-40 171.8 209 50.7
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 4.8e-31 140.6 131 52.7
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 2.6e-29 134.8 141 55.3
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 4.9e-28 130.6 161 49.7
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 9.7e-24 116.3 101 58.4
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 8.2e-23 113.2 181 38.7
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 2.4e-22 111.7 63 74.6
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 3.4e-21 107.8 181 37.6
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 7.6e-21 106.7 60 83.3
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 2.9e-20 104.8 127 51.2
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 9.3e-19 99.8 111 49.5
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 3.6e-18 97.8 110 51.8
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 6.3e-15 87.0 46 80.4
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 1.7e-12 79.0 68 60.3
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 2.2e-12 78.6 67 61.2
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 7.2e-11 73.6 49 75.5
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 7.9e-10 70.1 45 80.0
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 5.7e-08 63.9 34 88.2
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 1.7e-07 62.4 40 70.0
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 1.1e-06 59.7 106 39.6
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 1.8e-06 58.9 43 74.4


User provided reference genes

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