Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0165721 Helianthus annuus HOM05D001888 ORTHO05D001842 3.0e-71 271.9 157 100.0
HanXRQChr06g0165741 Helianthus annuus HOM05D001888 ORTHO05D001842 1.3e-34 150.2 109 84.4
ECA246G0115 Erigeron canadensis HOM05D001888 ORTHO05D001842 2.7e-27 125.9 109 72.5
Lsat_1_v5_gn_3_7740 Lactuca sativa HOM05D001888 ORTHO05D001842 5.0e-26 121.7 109 60.6
Lsat_1_v5_gn_6_6740 Lactuca sativa HOM05D001888 ORTHO05D001842 6.8e-23 111.3 109 56.0
ECA233G5260 Erigeron canadensis HOM05D001888 ORTHO05D001842 4.4e-22 108.6 115 51.3
CSS0033349 Camellia sinensis var. sinensis HOM05D001888 ORTHO05D001842 7.5e-22 107.8 115 53.9
SGA_v2.0_scaffold253G45119 Striga asiatica HOM05D001888 ORTHO05D001842 7.5e-22 107.8 109 62.4
VMungo0251G0235 Vigna mungo HOM05D001888 ORTHO05D001842 1.6e-19 100.1 113 49.6
CiPaw.12G095000 Carya illinoinensis HOM05D001888 ORTHO05D001842 5.9e-19 98.2 113 59.3
Phvul.002G287700 Phaseolus vulgaris HOM05D001888 ORTHO05D001842 7.7e-19 97.8 113 48.7
Haze_08882 Corylus avellana HOM05D001888 ORTHO05D001842 1.0e-18 97.4 113 61.9
Rhsim02G0225900 Rhododendron simsii HOM05D001888 ORTHO05D001842 1.3e-18 97.1 115 61.7
MSTRG.11997 Avicennia marina HOM05D001888 ORTHO05D001842 2.3e-18 96.3 106 64.2
GSVIVG01019782001 Vitis vinifera HOM05D001888 ORTHO05D001842 2.9e-18 95.9 113 48.7
Gorai.003G160000 Gossypium raimondii HOM05D001888 ORTHO05D001842 1.5e-17 93.6 113 60.2
Thecc.03G275900 Theobroma cacao HOM05D001888 ORTHO05D001842 1.5e-17 93.6 113 61.1
TWI60G0760 Tripterygium wilfordii HOM05D001888 ORTHO05D001842 1.5e-17 93.6 108 62.0
Lj8A233T58 Lonicera japonica HOM05D001888 ORTHO05D001842 2.5e-17 92.8 104 63.5
CAN.G792.86 Capsicum annuum HOM05D001888 ORTHO05D001842 3.3e-17 92.4 109 61.5
Prupe.5G096300 Prunus persica HOM05D001888 ORTHO05D001842 3.3e-17 92.4 113 61.1
Gohir.D03G152400 Gossypium hirsutum HOM05D001888 ORTHO05D001842 4.2e-17 92.0 113 60.2
vmacro11308 Vaccinium macrocarpon HOM05D001888 ORTHO05D001842 4.2e-17 92.0 115 60.0
BcaB06g27601 Brassica carinata HOM05D001888 ORTHO05D001842 5.5e-17 91.7 130 46.2
MSTRG.1880 Avicennia marina HOM05D001888 ORTHO05D001842 9.5e-17 90.9 113 57.5
Medtr8g097350 Medicago truncatula HOM05D001888 ORTHO05D001842 2.1e-16 89.7 113 52.2
Glyma.05G206100 Glycine max HOM05D001888 ORTHO05D001842 2.8e-16 89.4 113 52.2
Manes.02G023900 Manihot esculenta HOM05D001888 ORTHO05D001842 4.7e-16 88.6 109 60.6
ECA240G4760 Erigeron canadensis HOM05D001888 ORTHO05D001842 8.0e-16 87.8 96 64.6
Lj2A188T36 Lonicera japonica HOM05D001888 ORTHO05D001842 8.0e-16 87.8 113 59.3
ClCG07G008010 Citrullus lanatus HOM05D001888 ORTHO05D001842 1.0e-15 87.4 113 60.2
unitig_748.g8099 Utricularia gibba HOM05D001888 ORTHO05D001842 1.0e-15 87.4 113 42.5
CARHR048110 Cardamine hirsuta HOM05D001888 ORTHO05D001842 1.8e-15 86.7 130 52.3
Medtr5g010520 Medicago truncatula HOM05D001888 ORTHO05D001842 2.3e-15 86.3 113 54.0
QL12p018168 Quercus lobata HOM05D001888 ORTHO05D001842 2.3e-15 86.3 113 59.3
Phvul.002G155900 Phaseolus vulgaris HOM05D001888 ORTHO05D001842 3.0e-15 85.9 113 53.1
CiPaw.11G138000 Carya illinoinensis HOM05D001888 ORTHO05D001842 4.0e-15 85.5 113 57.5
Ca_17547_v3 Cicer arietinum L. HOM05D001888 ORTHO05D001842 5.2e-15 85.1 113 54.0
HanXRQChr03g0087301 Helianthus annuus HOM05D001888 ORTHO05D001842 5.2e-15 85.1 96 63.5
MELO3C016346.2 Cucumis melo HOM05D001888 ORTHO05D001842 6.8e-15 84.7 113 58.4
Glyma.11G025100 Glycine max HOM05D001888 ORTHO05D001842 6.8e-15 84.7 117 53.0
BcaC08g44511 Brassica carinata HOM05D001888 ORTHO05D001842 8.9e-15 84.3 130 43.8
TPR.G6640 Trifolium pratense HOM05D001888 ORTHO05D001842 8.9e-15 84.3 113 57.5
Dinv38962 Davidia involucrata HOM05D001888 ORTHO05D001842 1.2e-14 84.0 100 65.0
SalBow1G3630 Salvia bowleyana HOM05D001888 ORTHO05D001842 1.2e-14 84.0 113 42.5
Peaxi162Scf00102g01531 Petunia axillaris HOM05D001888 ORTHO05D001842 1.5e-14 83.6 109 58.7
VMungo1215G2968 Vigna mungo HOM05D001888 ORTHO05D001842 1.5e-14 83.6 117 52.1
Ca_24560_v3 Cicer arietinum L. HOM05D001888 ORTHO05D001842 2.0e-14 83.2 113 54.9
Manes.01G063600 Manihot esculenta HOM05D001888 ORTHO05D001842 2.0e-14 83.2 100 65.0
Duzib068G0855 Durio zibethinus HOM05D001888 ORTHO05D001842 2.6e-14 82.8 113 56.6
ClCG01G002910 Citrullus lanatus HOM05D001888 ORTHO05D001842 3.4e-14 82.4 113 56.6
Glyma.01G218100 Glycine max HOM05D001888 ORTHO05D001842 5.7e-14 81.6 117 55.6
Lalb_Chr09g0321091 Lupinus albus HOM05D001888 ORTHO05D001842 5.7e-14 81.6 113 51.3
MELO3C005655.2 Cucumis melo HOM05D001888 ORTHO05D001842 7.5e-14 81.3 113 55.8
HanXRQChr17g0533401 Helianthus annuus HOM05D001888 ORTHO05D001842 1.3e-13 80.5 87 66.7
Sc01g0009450 Simmondsia chinensis HOM05D001888 ORTHO05D001842 1.7e-13 80.1 105 60.0
Psat0s5147g0040 Pisum sativum HOM05D001888 ORTHO05D001842 2.8e-13 79.3 113 54.9
A04p14180 Brassica napus HOM05D001888 ORTHO05D001842 3.7e-13 79.0 118 44.9
C04p48220 Brassica napus HOM05D001888 ORTHO05D001842 3.7e-13 79.0 118 44.9
BraA04t17078Z Brassica rapa HOM05D001888 ORTHO05D001842 3.7e-13 79.0 118 44.9
CsaV3_4G006030 Cucumis sativus L. HOM05D001888 ORTHO05D001842 3.7e-13 79.0 113 58.4
Eucgr.D01870 Eucalyptus grandis HOM05D001888 ORTHO05D001842 3.7e-13 79.0 130 47.7
Glyma.08G013000 Glycine max HOM05D001888 ORTHO05D001842 3.7e-13 79.0 113 53.1
MSTRG.13835 Avicennia marina HOM05D001888 ORTHO05D001842 4.9e-13 78.6 97 47.4
MSTRG.25591 Avicennia marina HOM05D001888 ORTHO05D001842 6.3e-13 78.2 91 62.6
PGSC0003DMG400005777 Solanum tuberosum HOM05D001888 ORTHO05D001842 6.3e-13 78.2 109 56.9
Rhsim07G0091800 Rhododendron simsii HOM05D001888 ORTHO05D001842 8.3e-13 77.8 100 63.0
vmacro13947 Vaccinium macrocarpon HOM05D001888 ORTHO05D001842 8.3e-13 77.8 101 60.4
BcaC02g08981 Brassica carinata HOM05D001888 ORTHO05D001842 1.1e-12 77.4 118 44.1
BolC4t26414H Brassica oleracea HOM05D001888 ORTHO05D001842 1.1e-12 77.4 118 44.1
arahy.Tifrunner.gnm1.ann1.SEEZ4U Arachis hypogaea HOM05D001888 ORTHO05D001842 2.4e-12 76.3 116 53.4
DCAR_004646 Daucus carota HOM05D000683 ORTHO05D001842 3.1e-12 75.9 133 50.4
CsaV3_5G002990 Cucumis sativus L. HOM05D001888 ORTHO05D001842 4.1e-12 75.5 113 54.0
Lj2g0025321 Lotus japonicus HOM05D001888 ORTHO05D001842 4.1e-12 75.5 129 48.1
Aa31LG2G720 Aethionema arabicum HOM05D001888 ORTHO05D001842 5.4e-12 75.1 130 49.2
Potri.003G124600 Populus trichocarpa HOM05D001888 ORTHO05D001842 5.4e-12 75.1 100 57.0
DCAR_006748 Daucus carota HOM05D001888 ORTHO05D001842 7.0e-12 74.7 96 62.5
Dinv37661 Davidia involucrata HOM05D001888 ORTHO05D001842 7.0e-12 74.7 97 62.9
Migut.A00787 Erythranthe guttata HOM05D001888 ORTHO05D001842 7.0e-12 74.7 100 58.0
TAR367G0006 Trochodendron aralioides HOM05D001888 ORTHO05D001842 7.0e-12 74.7 109 54.1
TAR375G1033 Trochodendron aralioides HOM05D001888 ORTHO05D001842 7.0e-12 74.7 109 54.1
Potri.001G106700 Populus trichocarpa HOM05D001888 ORTHO05D001842 9.2e-12 74.3 100 58.0
Eucgr.E00571 Eucalyptus grandis HOM05D001888 ORTHO05D001842 1.2e-11 73.9 109 39.4
Sed0026333 Sechium edule HOM05D001888 ORTHO05D001842 1.2e-11 73.9 113 53.1
Actinidia03120 Actinidia chinensis HOM05D001888 ORTHO05D001842 2.7e-11 72.8 109 54.1
Sabra01G0080700 Salix brachista HOM05D001888 ORTHO05D001842 2.7e-11 72.8 99 58.6
TPR.G12909 Trifolium pratense HOM05D001888 ORTHO05D001842 2.7e-11 72.8 113 48.7
Ah.12g057230 Amaranthus hybridus HOM05D001888 ORTHO05D001842 3.5e-11 72.4 111 39.6
Hma1.2p1_1943F.1_g308520 Hydrangea macrophylla HOM05D001888 ORTHO05D001842 3.5e-11 72.4 52 69.2
MD14G1099400 Malus domestica HOM05D001888 ORTHO05D001842 3.5e-11 72.4 122 52.5
Aqoxy7G00360 Aquilegia oxysepala HOM05D001888 ORTHO05D001842 4.5e-11 72.0 109 55.0
Cc08_g14420 Coffea canephora HOM05D001888 ORTHO05D001842 4.5e-11 72.0 97 58.8
Psat7g035000 Pisum sativum HOM05D001888 ORTHO05D001842 4.5e-11 72.0 113 47.8
Sed0020347 Sechium edule HOM05D001888 ORTHO05D001842 4.5e-11 72.0 109 56.9
Ciclev10018577m.g Citrus clementina HOM05D001888 ORTHO05D001842 7.8e-11 71.2 57 64.9
MBI18_g09027_MAGBIO Magnolia biondii HOM05D001888 ORTHO05D001842 2.3e-10 69.7 107 40.2
AT5G41140 Arabidopsis thaliana HOM05D001888 ORTHO05D001842 2.9e-10 69.3 117 52.1
Lsat_1_v5_gn_6_87061 Lactuca sativa HOM05D001888 ORTHO05D001842 2.9e-10 69.3 122 46.7
Lalb_Chr16g0389871 Lupinus albus HOM05D001888 ORTHO05D001842 2.9e-10 69.3 113 37.2
Sp7g00760 Schrenkiella parvula HOM05D001888 ORTHO05D001842 2.9e-10 69.3 101 57.4
SpUn0010_0240 Schrenkiella parvula HOM05D001888 ORTHO05D001842 2.9e-10 69.3 101 57.4
Sc07g0009660 Simmondsia chinensis HOM05D001888 ORTHO05D001842 2.9e-10 69.3 57 61.4
Gohir.A03G015600 Gossypium hirsutum HOM05D001888 ORTHO05D001842 3.8e-10 68.9 100 55.0
Gorai.008G245500 Gossypium raimondii HOM05D001888 ORTHO05D001842 3.8e-10 68.9 100 59.0
TAR636G2336 Trochodendron aralioides HOM05D001888 ORTHO05D001842 3.8e-10 68.9 115 51.3
Cpa.g.sc202.4 Carica papaya HOM05D001888 ORTHO05D001842 5.0e-10 68.6 52 59.6
arahy.Tifrunner.gnm1.ann1.2U7QKV Arachis hypogaea HOM05D001888 ORTHO05D001842 6.6e-10 68.2 116 50.9
Carub.0007s3433 Capsella rubella HOM05D001888 ORTHO05D001842 6.6e-10 68.2 117 51.3
Haze_13713 Corylus avellana HOM05D001888 ORTHO05D001842 6.6e-10 68.2 129 47.3
Sp2g01220 Schrenkiella parvula HOM05D001888 ORTHO05D001842 6.6e-10 68.2 117 51.3
Hund11487 Selenicereus undatus HOM05D001888 ORTHO05D001842 6.6e-10 68.2 107 52.3
Cfa008318 Carpinus fangiana HOM05D001888 ORTHO05D001842 8.6e-10 67.8 129 45.7
MD06G1083600 Malus domestica HOM05D001888 ORTHO05D001842 8.6e-10 67.8 94 42.6
CSS0014564 Camellia sinensis var. sinensis HOM05D001888 ORTHO05D001842 1.1e-09 67.4 100 57.0
CSS0016128 Camellia sinensis var. sinensis HOM05D001888 ORTHO05D001842 1.1e-09 67.4 100 57.0
Thhalv10027632m.g Eutrema salsugineum HOM05D001888 ORTHO05D001842 1.1e-09 67.4 118 50.0
AT1G63300 Arabidopsis thaliana HOM05D001888 ORTHO05D001842 1.5e-09 67.0 117 51.3
BolC9t54526H Brassica oleracea HOM05D001888 ORTHO05D001842 1.5e-09 67.0 117 52.1
Gohir.D12G229250 Gossypium hirsutum HOM05D001888 ORTHO05D001842 1.5e-09 67.0 99 58.6
DCAR_000600 Daucus carota HOM05D001888 ORTHO05D001842 1.9e-09 66.6 95 45.3
Manes.06G147000 Manihot esculenta HOM05D001888 ORTHO05D001842 2.5e-09 66.2 113 49.6
Nitab4.5_0009051g0010 Nicotiana tabacum HOM05D001888 ORTHO05D001842 3.3e-09 65.9 99 57.6
AL7G48360 Arabidopsis lyrata HOM05D001888 ORTHO05D001842 4.3e-09 65.5 117 50.4
CSS0022417 Camellia sinensis var. sinensis HOM05D001888 ORTHO05D001842 4.3e-09 65.5 109 53.2
Nitab4.5_0004032g0050 Nicotiana tabacum HOM05D001888 ORTHO05D001842 4.3e-09 65.5 104 54.8
Sabra03G0088100 Salix brachista HOM05D001888 ORTHO05D001842 4.3e-09 65.5 100 57.0
Gohir.A12G226900 Gossypium hirsutum HOM05D001888 ORTHO05D001842 5.6e-09 65.1 100 58.0
Manes.06G008700 Manihot esculenta HOM05D001888 ORTHO05D001842 5.6e-09 65.1 57 61.4
Nitab4.5_0001356g0050 Nicotiana tabacum HOM05D001888 ORTHO05D001842 5.6e-09 65.1 99 56.6
TAR374G1672 Trochodendron aralioides HOM05D001888 ORTHO05D001842 5.6e-09 65.1 109 50.5
Medtr0415s0020 Medicago truncatula HOM05D001888 ORTHO05D001842 7.3e-09 64.7 108 45.4
AL2G11850 Arabidopsis lyrata HOM05D001888 ORTHO05D001842 1.2e-08 63.9 117 50.4
arahy.Tifrunner.gnm1.ann1.BHNX0U Arachis hypogaea HOM05D001888 ORTHO05D001842 1.2e-08 63.9 100 51.0
PGR042G0266 Punica granatum HOM05D001888 ORTHO05D001842 1.2e-08 63.9 113 38.1
Carub.0002s0152 Capsella rubella HOM05D001888 ORTHO05D001842 1.6e-08 63.5 117 50.4
THA.LOC104800251 Tarenaya hassleriana HOM05D001888 ORTHO05D001842 2.1e-08 63.2 116 37.1
THA.LOC104818070 Tarenaya hassleriana HOM05D001888 ORTHO05D001842 2.1e-08 63.2 99 53.5
Thecc.03G176500 Theobroma cacao HOM05D001888 ORTHO05D001842 2.1e-08 63.2 129 45.0
TWI81G0663 Tripterygium wilfordii HOM05D001888 ORTHO05D001842 2.1e-08 63.2 100 53.0
arahy.Tifrunner.gnm1.ann1.TJC463 Arachis hypogaea HOM05D001888 ORTHO05D001842 3.6e-08 62.4 101 50.5
Potri.012G141200 Populus trichocarpa HOM05D001888 ORTHO05D001842 3.6e-08 62.4 116 47.4
Hund14761 Selenicereus undatus HOM05D001888 ORTHO05D001842 4.7e-08 62.0 104 38.5
PGSC0003DMG400012221 Solanum tuberosum HOM05D001888 ORTHO05D001842 6.1e-08 61.6 99 53.5
CARHR213230 Cardamine hirsuta HOM05D001888 ORTHO05D001842 8.0e-08 61.2 117 49.6
Migut.E01108 Erythranthe guttata HOM05D001888 ORTHO05D001842 8.0e-08 61.2 55 56.4
Sopen08g029100 Solanum pennellii HOM05D001888 ORTHO05D001842 1.0e-07 60.8 96 55.2
unitig_748.g7428 Utricularia gibba HOM05D001888 ORTHO05D001842 1.0e-07 60.8 93 40.9
Nitab4.5_0001200g0170 Nicotiana tabacum HOM05D001888 ORTHO05D001842 1.4e-07 60.5 100 54.0
QL09p014226 Quercus lobata HOM05D001888 ORTHO05D001842 1.4e-07 60.5 109 48.6
Actinidia27391 Actinidia chinensis HOM05D001888 ORTHO05D001842 1.8e-07 60.1 99 54.5
CAN.G859.17 Capsicum annuum HOM05D001888 ORTHO05D001842 1.8e-07 60.1 94 55.3
Actinidia05215 Actinidia chinensis HOM05D001888 ORTHO05D001842 3.0e-07 59.3 100 54.0
BcaC04g22705 Brassica carinata HOM05D001888 ORTHO05D001842 3.0e-07 59.3 117 48.7
C09p16080 Brassica napus HOM05D001888 ORTHO05D001842 3.0e-07 59.3 117 48.7
BraA09t37011Z Brassica rapa HOM05D001888 ORTHO05D001842 3.0e-07 59.3 117 49.6
Solyc08g080780.4 Solanum lycopersicum HOM05D001888 ORTHO05D001842 3.0e-07 59.3 94 55.3
EL10Ac5g12777 Beta vulgaris HOM05D001888 ORTHO05D001842 4.0e-07 58.9 119 36.1
A09p13580 Brassica napus HOM05D001888 ORTHO05D001842 4.0e-07 58.9 117 49.6
Nn1g01461 Nelumbo nucifera HOM05D001888 ORTHO05D001842 4.0e-07 58.9 101 53.5
Zm00001eb044090 Zea mays HOM05D001888 ORTHO05D001842 4.0e-07 58.9 96 38.5
Aa31LG9G700 Aethionema arabicum HOM05D001888 ORTHO05D001842 6.8e-07 58.2 103 37.9
Thhalv10023231m.g Eutrema salsugineum HOM05D001888 ORTHO05D001842 6.8e-07 58.2 117 48.7
Zm00001eb220750 Zea mays HOM05D001888 ORTHO05D001842 6.8e-07 58.2 96 38.5
Atru.chr9.2207 Acer truncatum HOM05D001888 ORTHO05D001842 8.9e-07 57.8 117 46.2
MBI17_g39342_MAGBIO Magnolia biondii HOM05D001888 ORTHO05D001842 8.9e-07 57.8 93 40.9
FAN18G1824 Fragaria x ananassa HOM05D001888 ORTHO05D001842 1.2e-06 57.4 98 53.1
Lalb_Chr06g0161141 Lupinus albus HOM05D001888 ORTHO05D001842 1.5e-06 57.0 124 41.9
FAN04G2882 Fragaria x ananassa HOM05D001888 ORTHO05D001842 2.0e-06 56.6 98 53.1
FAN08G2193 Fragaria x ananassa HOM05D001888 ORTHO05D001842 2.0e-06 56.6 98 53.1
Peaxi162Scf00714g00016 Petunia axillaris HOM05D001888 ORTHO05D001842 2.0e-06 56.6 81 60.5
QL93p1873_0082 Quercus lobata HOM05D001888 ORTHO05D001842 2.0e-06 56.6 105 47.6
Glyma.20G158400 Glycine max HOM05D001888 ORTHO05D001842 2.6e-06 56.2 122 43.4
Lj5g0008064 Lotus japonicus HOM05D001888 ORTHO05D001842 2.6e-06 56.2 122 41.0
Oeu049551.1 Olea europaea HOM05D001888 ORTHO05D001842 2.6e-06 56.2 155 40.0
Solyc08g007970.3 Solanum lycopersicum HOM05D001888 ORTHO05D001842 2.6e-06 56.2 96 54.2
AUR62017256 Chenopodium quinoa HOM05D001888 ORTHO05D001842 3.4e-06 55.8 70 42.9
Ah.02g116510 Amaranthus hybridus HOM05D001888 ORTHO05D002850 4.4e-06 55.5 97 44.3
arahy.Tifrunner.gnm1.ann1.UG6FLW Arachis hypogaea HOM05D001888 ORTHO05D001842 4.4e-06 55.5 122 41.8
Gorai.004G210000 Gossypium raimondii HOM05D001888 ORTHO05D001842 4.4e-06 55.5 117 50.4
RcHm_v2.0_Chr7g0198351 Rosa chinensis HOM05D001888 ORTHO05D001842 4.4e-06 55.5 98 53.1
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 5.8e-06 55.1 122 42.6
ATR0680G405 Amborella trichopoda HOM05D001888 ORTHO05D001842 9.8e-06 54.3 93 38.7
FvH4_5g02001 Fragaria vesca HOM05D001888 ORTHO05D001842 9.8e-06 54.3 98 52.0
Sopen08g003850 Solanum pennellii HOM05D001888 ORTHO05D001842 9.8e-06 54.3 96 53.1


User provided reference genes

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