Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 6.7e-145 517.3 257 100.0
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 1.9e-115 419.5 229 91.3
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 2.4e-70 269.6 238 63.0
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 2.3e-68 263.1 230 62.6
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 8.7e-52 208.0 221 50.7
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 7.4e-51 204.9 217 49.8
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 9.6e-51 204.5 217 48.4
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 6.4e-47 191.8 245 43.7
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 9.3e-46 188.0 224 46.9
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 2.7e-45 186.4 221 44.8
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 2.7e-45 186.4 219 45.7
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 1.0e-44 184.5 222 42.3
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.0e-44 183.0 219 46.1
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 3.9e-44 182.6 226 45.1
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 3.9e-44 182.6 233 43.3
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 3.9e-44 182.6 232 44.4
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 5.1e-44 182.2 220 45.9
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 6.7e-44 181.8 228 45.2
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 6.7e-44 181.8 226 43.4
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.3e-43 179.1 217 44.2
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 4.3e-43 179.1 217 45.2
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 4.3e-43 179.1 221 46.2
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 9.6e-43 177.9 218 43.1
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 2.1e-42 176.8 217 44.7
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.8e-41 173.7 224 39.7
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.8e-41 173.7 224 41.5
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 4.0e-41 172.6 219 41.6
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.3e-41 172.2 224 39.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.3e-41 172.2 224 39.7
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 9.0e-41 171.4 220 41.4
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 1.2e-40 171.0 228 45.2
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.5e-40 170.6 217 39.6
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.0e-40 170.2 216 41.2
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 5.8e-40 168.7 219 41.6
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 7.6e-40 168.3 217 41.5
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 7.6e-40 168.3 224 38.4
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 7.6e-40 168.3 218 39.4
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.3e-39 167.5 216 40.7
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.7e-39 167.2 217 38.7
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.2e-39 166.8 218 42.7
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 2.2e-39 166.8 219 40.2
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 2.2e-39 166.8 208 43.3
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 4.9e-39 165.6 223 42.2
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 6.5e-39 165.2 219 40.2
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.1e-38 164.5 216 40.7
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 2.5e-38 163.3 232 39.7
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 3.2e-38 162.9 249 37.8
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 4.2e-38 162.5 217 42.4
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 5.5e-38 162.2 215 38.6
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 5.5e-38 162.2 242 39.7
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 7.1e-38 161.8 226 41.2
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 2.1e-37 160.2 217 42.9
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 2.7e-37 159.8 227 41.0
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 2.7e-37 159.8 237 39.2
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.0e-36 157.9 215 39.5
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 2.3e-36 156.8 223 36.8
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 3.9e-36 156.0 218 38.1
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 3.9e-36 156.0 218 38.5
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 5.1e-36 155.6 190 41.6
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 1.9e-35 153.7 222 39.2
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 1.9e-35 153.7 222 38.3
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 4.3e-35 152.5 191 44.5
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.3e-35 152.5 217 41.0
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.3e-34 151.0 191 45.0
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 2.1e-34 150.2 216 40.7
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.7e-34 149.4 215 38.1
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 4.8e-34 149.1 222 39.2
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 4.8e-34 149.1 222 39.2
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 6.3e-34 148.7 213 38.5
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 6.3e-34 148.7 193 39.9
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 2.4e-33 146.7 222 36.5
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 3.1e-33 146.4 211 37.9
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.1e-33 146.4 215 37.7
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 4.1e-33 146.0 217 38.7
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 4.1e-33 146.0 218 40.4
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 9.0e-33 144.8 214 38.8
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 9.0e-33 144.8 191 42.4
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.2e-32 144.4 215 38.1
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 1.2e-32 144.4 237 37.1
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.0e-32 143.7 212 38.7
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 3.4e-32 142.9 197 40.6
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 5.9e-32 142.1 179 44.7
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.7e-31 140.6 211 37.0
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.7e-31 140.6 233 36.5
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 2.2e-31 140.2 221 36.7
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 2.9e-31 139.8 233 36.9
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 3.8e-31 139.4 231 36.8
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 8.5e-31 138.3 228 35.1
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 1.1e-30 137.9 214 36.9
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.9e-30 137.1 214 36.4
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 2.5e-30 136.7 239 36.4
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 2.5e-30 136.7 218 39.9
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 4.2e-30 136.0 222 37.4
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 4.2e-30 136.0 214 36.4
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 4.2e-30 136.0 214 37.9
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 9.3e-30 134.8 221 35.7
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 1.6e-29 134.0 209 34.9
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 1.3e-26 124.4 221 32.1
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 2.2e-26 123.6 204 36.3
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 4.8e-26 122.5 191 36.6
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 6.3e-26 122.1 117 53.8
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 4.1e-25 119.4 221 32.1
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 6.9e-25 118.6 221 31.7
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.4e-22 110.9 86 65.1
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.2e-22 109.8 193 31.1
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.6e-21 107.5 215 29.8
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.4e-20 104.4 195 30.3
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 5.1e-20 102.4 233 30.5
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 1.1e-17 94.7 86 52.3
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 1.4e-17 94.4 239 28.0
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 1.8e-17 94.0 229 27.5
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 1.8e-17 94.0 133 36.1
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 1.7e-15 87.4 226 28.3
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 1.1e-11 74.7 81 46.9
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 2.8e-10 70.1 243 22.2
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 3.7e-10 69.7 85 38.8
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 8.5e-07 58.5 68 45.6


User provided reference genes

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