Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr06g0163731 Helianthus annuus HOM05D005449 ORTHO05D006916 3.0e-44 181.4 90 100.0
HanXRQChr06g0163691 Helianthus annuus HOM05D005449 ORTHO05D006916 4.6e-40 167.5 84 98.8
Lsat_1_v5_gn_8_164201 Lactuca sativa HOM05D005449 ORTHO05D006916 1.2e-35 152.9 86 91.9
Lsat_1_v5_gn_7_53001 Lactuca sativa HOM05D005449 ORTHO05D006916 9.8e-35 149.8 86 89.5
ECA236G0849 Erigeron canadensis HOM05D005449 ORTHO05D006916 1.2e-32 142.9 75 93.3
HanXRQChr10g0316901 Helianthus annuus HOM05D005449 ORTHO05D006916 1.2e-32 142.9 76 90.8
Gohir.D12G133700 Gossypium hirsutum HOM05D005449 ORTHO05D006916 1.6e-32 142.5 84 81.0
Gorai.008G144700 Gossypium raimondii HOM05D005449 ORTHO05D006916 1.6e-32 142.5 84 81.0
MELO3C017987.2 Cucumis melo HOM05D005449 ORTHO05D006916 2.7e-32 141.7 87 81.6
Ca_17681_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 4.6e-32 141.0 82 84.1
Ca_29605_v3 Cicer arietinum L. HOM05D005449 ORTHO05D006916 4.6e-32 141.0 82 84.1
Lj4g0006553 Lotus japonicus HOM05D005449 ORTHO05D006916 1.0e-31 139.8 82 82.9
Oeu054120.1 Olea europaea HOM05D005449 ORTHO05D006916 1.0e-31 139.8 84 83.3
CsaV3_4G000480 Cucumis sativus L. HOM05D005449 ORTHO05D006916 1.3e-31 139.4 86 81.4
Migut.D00146 Erythranthe guttata HOM05D005449 ORTHO05D006916 1.3e-31 139.4 82 85.4
TWI14G0435 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 1.7e-31 139.0 76 89.5
arahy.Tifrunner.gnm1.ann1.X8E93Z Arachis hypogaea HOM05D005449 ORTHO05D006916 2.3e-31 138.7 82 82.9
arahy.Tifrunner.gnm1.ann1.YB8ZH2 Arachis hypogaea HOM05D005449 ORTHO05D006916 2.3e-31 138.7 82 82.9
COL.COLO4_23333 Corchorus olitorius HOM05D005449 ORTHO05D006916 3.0e-31 138.3 84 82.1
Oeu024404.1 Olea europaea HOM05D005449 ORTHO05D006916 3.0e-31 138.3 84 83.3
Gohir.A12G129900 Gossypium hirsutum HOM05D005449 ORTHO05D006916 3.9e-31 137.9 84 78.6
Hma1.2p1_1986F.1_g310070 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 3.9e-31 137.9 85 84.7
Hma1.2p1_2044F.1_g312372 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 3.9e-31 137.9 85 84.7
MBI18_g24865_MAGBIO Magnolia biondii HOM05D005449 ORTHO05D006916 3.9e-31 137.9 81 84.0
Medtr8g092180 Medicago truncatula HOM05D005449 ORTHO05D006916 3.9e-31 137.9 77 88.3
Sed0024679 Sechium edule HOM05D005449 ORTHO05D006916 3.9e-31 137.9 86 81.4
Prupe.8G140700 Prunus persica HOM05D005449 ORTHO05D006916 5.1e-31 137.5 86 80.2
Cfa005902 Carpinus fangiana HOM05D005449 ORTHO05D006916 6.6e-31 137.1 85 82.4
CSS0004919 Camellia sinensis var. sinensis HOM05D005449 ORTHO05D006916 8.6e-31 136.7 86 81.4
Potri.014G127900 Populus trichocarpa HOM05D005449 ORTHO05D006916 8.6e-31 136.7 80 85.0
EL10Ac7g17526 Beta vulgaris HOM05D005449 ORTHO05D006916 1.1e-30 136.3 79 84.8
Nn3g21512 Nelumbo nucifera HOM05D005449 ORTHO05D006916 1.1e-30 136.3 79 86.1
SGA_v2.0_scaffold1G00359 Striga asiatica HOM05D005449 ORTHO05D006916 1.1e-30 136.3 83 81.9
PGR119G1363 Punica granatum HOM05D005449 ORTHO05D006916 1.5e-30 136.0 84 83.3
Psat7g049640 Pisum sativum HOM05D005449 ORTHO05D006916 2.5e-30 135.2 77 85.7
TPR.G2165 Trifolium pratense HOM05D005449 ORTHO05D006916 2.5e-30 135.2 77 85.7
Glyma.05G185600 Glycine max HOM05D005449 ORTHO05D006916 3.3e-30 134.8 77 85.7
Phvul.002G266700 Phaseolus vulgaris HOM05D005449 ORTHO05D006916 3.3e-30 134.8 77 85.7
VMungo0251G2862 Vigna mungo HOM05D000587 ORTHO05D000929 3.3e-30 134.8 77 85.7
Duzib138G1099 Durio zibethinus HOM05D005449 ORTHO05D006916 4.3e-30 134.4 84 79.8
RcHm_v2.0_Chr6g0252941 Rosa chinensis HOM05D005449 ORTHO05D006916 4.3e-30 134.4 84 82.1
Glyma.08G143600 Glycine max HOM05D005449 ORTHO05D006916 5.6e-30 134.0 77 84.4
QL12p028306 Quercus lobata HOM05D005449 ORTHO05D006916 5.6e-30 134.0 76 88.2
Rhsim06G0059700 Rhododendron simsii HOM05D005449 ORTHO05D006916 5.6e-30 134.0 84 79.8
TAR636G0282 Trochodendron aralioides HOM05D005449 ORTHO05D006916 5.6e-30 134.0 76 88.2
Dinv33060 Davidia involucrata HOM05D005449 ORTHO05D006916 7.3e-30 133.7 85 80.0
Ciclev10022754m.g Citrus clementina HOM05D005449 ORTHO05D006916 9.5e-30 133.3 85 81.2
FAN27G2298 Fragaria x ananassa HOM05D005449 ORTHO05D006916 9.5e-30 133.3 86 80.2
DCAR_002842 Daucus carota HOM05D005449 ORTHO05D006916 1.2e-29 132.9 75 88.0
Dinv44016 Davidia involucrata HOM05D005449 ORTHO05D006916 1.6e-29 132.5 85 78.8
Thecc.01G301700 Theobroma cacao HOM05D005449 ORTHO05D006916 1.6e-29 132.5 84 78.6
unitig_26.g10174 Utricularia gibba HOM05D005449 ORTHO05D006916 1.6e-29 132.5 77 83.1
MSTRG.21637 Avicennia marina HOM05D005449 ORTHO05D006916 2.1e-29 132.1 76 85.5
Cc01_g20940 Coffea canephora HOM05D005449 ORTHO05D006916 2.1e-29 132.1 77 85.7
Duzib211G0575 Durio zibethinus HOM05D005449 ORTHO05D006916 2.1e-29 132.1 77 81.8
FAN20G1025 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.1e-29 132.1 86 79.1
FvH4_2g03920 Fragaria vesca HOM05D005449 ORTHO05D006916 3.6e-29 131.3 86 79.1
Lalb_Chr03g0036381 Lupinus albus HOM05D005449 ORTHO05D006916 3.6e-29 131.3 75 85.3
FAN15G2928 Fragaria x ananassa HOM05D005449 ORTHO05D006916 4.7e-29 131.0 82 81.7
MD05G1096300 Malus domestica HOM05D005449 ORTHO05D006916 4.7e-29 131.0 86 77.9
Manes.05G061600 Manihot esculenta HOM05D005449 ORTHO05D006916 4.7e-29 131.0 84 76.2
Hund11156 Selenicereus undatus HOM05D005449 ORTHO05D006916 4.7e-29 131.0 84 78.6
Ah.08g213380 Amaranthus hybridus HOM05D005449 ORTHO05D006916 6.2e-29 130.6 82 78.0
CiPaw.08G094600 Carya illinoinensis HOM05D005449 ORTHO05D006916 6.2e-29 130.6 76 86.8
ClCG10G010560 Citrullus lanatus HOM05D005449 ORTHO05D006916 6.2e-29 130.6 98 71.4
TWI59G1340 Tripterygium wilfordii HOM05D005449 ORTHO05D006916 6.2e-29 130.6 76 85.5
Atru.chr5.1135 Acer truncatum HOM05D005449 ORTHO05D006916 8.1e-29 130.2 75 85.3
CiPaw.07G110200 Carya illinoinensis HOM05D005449 ORTHO05D006916 1.1e-28 129.8 85 78.8
Sabra14G0095000 Salix brachista HOM05D005449 ORTHO05D006916 1.4e-28 129.4 73 89.0
Cpa.g.sc9.253 Carica papaya HOM05D005449 ORTHO05D006916 1.8e-28 129.0 84 78.6
Aqoxy1G00207 Aquilegia oxysepala HOM05D005449 ORTHO05D006916 2.3e-28 128.6 85 77.6
PSO675G2222 Papaver somniferum HOM05D005449 ORTHO05D006916 3.1e-28 128.3 84 78.6
RcHm_v2.0_Chr6g0252971 Rosa chinensis HOM05D005449 ORTHO05D006916 3.1e-28 128.3 84 79.8
Eucgr.F02473 Eucalyptus grandis HOM05D005449 ORTHO05D006916 4.0e-28 127.9 84 78.6
THA.LOC104817488 Tarenaya hassleriana HOM05D005449 ORTHO05D006916 4.0e-28 127.9 80 78.8
HPP92_010681 Vanilla planifolia HOM05D005449 ORTHO05D006916 4.0e-28 127.9 83 77.1
CANSAT25G1565 Cannabis sativa HOM05D005449 ORTHO05D006916 8.9e-28 126.7 76 81.6
Solyc08g074670.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 8.9e-28 126.7 84 78.6
Sopen08g023260 Solanum pennellii HOM05D005449 ORTHO05D006916 8.9e-28 126.7 84 78.6
GSVIVG01028030001 Vitis vinifera HOM05D005449 ORTHO05D006916 8.9e-28 126.7 68 92.6
ATR0582G023 Amborella trichopoda HOM05D005449 ORTHO05D006916 1.2e-27 126.3 78 79.5
CDE05G2918 Ceratophyllum demersum HOM05D005449 ORTHO05D006916 2.6e-27 125.2 80 78.8
PGSC0003DMG400018921 Solanum tuberosum HOM05D005449 ORTHO05D006916 2.6e-27 125.2 84 77.4
RcHm_v2.0_Chr6g0264541 Rosa chinensis HOM05D005449 ORTHO05D006916 4.4e-27 124.4 84 77.4
SEGI_14448 Sequoiadendron giganteum HOM05D005449 ORTHO05D006916 4.4e-27 124.4 82 74.4
CAN.G857.16 Capsicum annuum HOM05D005449 ORTHO05D006916 5.8e-27 124.0 84 76.2
FvH4_7g29690 Fragaria vesca HOM05D005449 ORTHO05D006916 5.8e-27 124.0 78 82.1
Nitab4.5_0008438g0020 Nicotiana tabacum HOM05D005449 ORTHO05D006916 5.8e-27 124.0 83 77.1
FAN22G2041 Fragaria x ananassa HOM05D005449 ORTHO05D006916 7.5e-27 123.6 84 75.0
Peaxi162Scf00445g00079 Petunia axillaris HOM05D005449 ORTHO05D006916 9.9e-27 123.2 84 76.2
FvH4_4g11510 Fragaria vesca HOM05D005449 ORTHO05D006916 1.3e-26 122.9 84 73.8
Rhsim09G0186400 Rhododendron simsii HOM05D005449 ORTHO05D006916 1.3e-26 122.9 100 63.0
PGSC0003DMG400004469 Solanum tuberosum HOM05D005449 ORTHO05D006916 1.3e-26 122.9 84 75.0
RcHm_v2.0_Chr4g0408421 Rosa chinensis HOM05D005449 ORTHO05D006916 1.7e-26 122.5 84 73.8
Actinidia21206 Actinidia chinensis HOM05D005449 ORTHO05D006916 2.2e-26 122.1 81 74.1
FAN07G2516 Fragaria x ananassa HOM05D005449 ORTHO05D006916 2.2e-26 122.1 84 73.8
Solyc08g005920.3 Solanum lycopersicum HOM05D005449 ORTHO05D006916 2.2e-26 122.1 79 75.9
Os05g0154900 Oryza sativa ssp. japonica HOM05D005449 ORTHO05D006916 2.9e-26 121.7 81 75.3
Sopen08g001890 Solanum pennellii HOM05D005449 ORTHO05D006916 2.9e-26 121.7 79 74.7
Peaxi162Scf00045g01343 Petunia axillaris HOM05D005449 ORTHO05D006916 3.7e-26 121.3 77 77.9
Thhalv10010784m.g Eutrema salsugineum HOM05D005449 ORTHO05D006916 4.9e-26 120.9 81 76.5
Sc04g0009560 Simmondsia chinensis HOM05D005449 ORTHO05D006916 4.9e-26 120.9 75 78.7
Nitab4.5_0002276g0010 Nicotiana tabacum HOM05D005449 ORTHO05D006916 8.3e-26 120.2 84 76.2
AL5G33630 Arabidopsis lyrata HOM05D005449 ORTHO05D006916 1.1e-25 119.8 81 75.3
Carub.0005s1933 Capsella rubella HOM05D005449 ORTHO05D006916 1.1e-25 119.8 81 75.3
CARHR162730 Cardamine hirsuta HOM05D005449 ORTHO05D006916 1.1e-25 119.8 81 75.3
BcaB01g00336 Brassica carinata HOM05D005449 ORTHO05D006916 1.4e-25 119.4 81 75.3
Sp5g09480 Schrenkiella parvula HOM05D005449 ORTHO05D006916 1.4e-25 119.4 81 75.3
vmacro09952 Vaccinium macrocarpon HOM05D005449 ORTHO05D006916 1.4e-25 119.4 109 60.6
C08p28130 Brassica napus HOM05D005449 ORTHO05D006916 3.2e-25 118.2 82 73.2
BraA09t40054Z Brassica rapa HOM05D005449 ORTHO05D006916 3.2e-25 118.2 82 73.2
AT3G52860 Arabidopsis thaliana HOM05D005449 ORTHO05D006916 4.1e-25 117.9 81 74.1
A09p45940 Brassica napus HOM05D005449 ORTHO05D006916 5.4e-25 117.5 81 74.1
BolC8t50425H Brassica oleracea HOM05D005449 ORTHO05D006916 5.4e-25 117.5 81 74.1
Zm00001eb346090 Zea mays HOM05D005449 ORTHO05D006916 7.1e-25 117.1 84 70.2
PSO675G2923 Papaver somniferum HOM05D005449 ORTHO05D006916 1.0e-23 113.2 82 70.7
Nitab4.5_0000860g0030 Nicotiana tabacum HOM05D005449 ORTHO05D006916 1.1e-22 109.8 79 72.2
Pp3c14_5880 Physcomitrium patens HOM05D005449 ORTHO05D006916 3.3e-22 108.2 74 68.9
AUR62008679 Chenopodium quinoa HOM05D005449 ORTHO05D006916 4.3e-22 107.8 77 74.0
AUR62025565 Chenopodium quinoa HOM05D005449 ORTHO05D006916 9.5e-22 106.7 82 69.5
SMO367G0046 Selaginella moellendorffii HOM05D005449 ORTHO05D006916 2.8e-21 105.1 75 65.3
Mapoly0162s0020 Marchantia polymorpha HOM05D005449 ORTHO05D006916 5.8e-19 97.4 74 59.5
AagrBONN_evm.TU.Sc2ySwM_117.989 Anthoceros agrestis HOM05D005449 ORTHO05D006916 3.2e-17 91.7 84 56.0
Zm00001eb085090 Zea mays HOM05D005449 ORTHO05D006916 4.2e-17 91.3 111 49.5
Zm00001eb340530 Zea mays HOM05D005449 ORTHO05D006916 1.2e-16 89.7 92 55.4
Ciclev10033890m.g Citrus clementina HOM05D005449 ORTHO05D006916 6.2e-13 77.4 106 47.2
Haze_04950 Corylus avellana HOM05D005449 ORTHO05D006916 7.6e-11 70.5 40 85.0
Atru.chr11.2437 Acer truncatum HOM05D005449 ORTHO05D006916 2.2e-10 68.9 115 40.9
MD10G1102600 Malus domestica HOM05D005449 ORTHO05D006916 2.2e-10 68.9 44 75.0
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 1.1e-09 66.6 48 66.7
FAN17G0623 Fragaria x ananassa HOM05D005449 ORTHO05D006916 9.3e-09 63.5 43 74.4
BcaC07g39651 Brassica carinata HOM05D001272 ORTHO05D001843 3.0e-07 58.5 42 69.0
Hma1.2p1_0494F.1_g165230 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 5.1e-07 57.8 33 81.8


User provided reference genes

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