Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0163421 Helianthus annuus HOM05D005389 ORTHO05D022799 1.7e-70 269.2 135 100.0
HanXRQChr09g0265861 Helianthus annuus HOM05D005389 ORTHO05D008484 1.5e-34 149.8 78 94.9
Lsat_1_v5_gn_4_181101 Lactuca sativa HOM05D005389 ORTHO05D008484 1.8e-32 142.9 78 89.7
ECA232G1242 Erigeron canadensis HOM05D005389 ORTHO05D008484 1.3e-25 120.2 78 78.2
Cpa.g.sc14.89 Carica papaya HOM05D005389 ORTHO05D008484 4.9e-22 108.2 79 68.4
vmacro05794 Vaccinium macrocarpon HOM05D005389 ORTHO05D008484 1.1e-21 107.1 78 69.2
Cc07_g02570 Coffea canephora HOM05D005389 ORTHO05D008484 2.4e-21 105.9 74 70.3
Rhsim10G0027600 Rhododendron simsii HOM05D005389 ORTHO05D008484 3.2e-21 105.5 78 67.9
COL.COLO4_06141 Corchorus olitorius HOM05D005389 ORTHO05D008484 4.2e-21 105.1 74 70.3
Thecc.04G003900 Theobroma cacao HOM05D005389 ORTHO05D008484 4.2e-21 105.1 79 69.6
Duzib264G0565 Durio zibethinus HOM05D005389 ORTHO05D008484 5.4e-21 104.8 75 72.0
Ciclev10010988m.g Citrus clementina HOM05D005389 ORTHO05D008484 1.2e-20 103.6 74 64.9
VMungo1383G0108 Vigna mungo HOM05D005389 ORTHO05D008484 1.2e-20 103.6 78 66.7
CiPaw.03G035000 Carya illinoinensis HOM05D005389 ORTHO05D008484 1.6e-20 103.2 76 67.1
QL02p077913 Quercus lobata HOM05D005389 ORTHO05D008484 1.6e-20 103.2 78 67.9
MBI14_g02685_MAGBIO Magnolia biondii HOM05D005389 ORTHO05D008484 3.5e-20 102.1 81 65.4
Phvul.008G153100 Phaseolus vulgaris HOM05D005389 ORTHO05D008484 3.5e-20 102.1 78 65.4
TAR374G1603 Trochodendron aralioides HOM05D005389 ORTHO05D008484 3.5e-20 102.1 74 64.9
Eucgr.I01836 Eucalyptus grandis HOM05D005389 ORTHO05D008484 4.6e-20 101.7 76 64.5
Nitab4.5_0001952g0170 Nicotiana tabacum HOM05D005389 ORTHO05D008484 6.0e-20 101.3 82 63.4
Nitab4.5_0005206g0050 Nicotiana tabacum HOM05D005389 ORTHO05D008484 6.0e-20 101.3 84 61.9
arahy.Tifrunner.gnm1.ann1.D3X87A Arachis hypogaea HOM05D005389 ORTHO05D008484 1.0e-19 100.5 78 66.7
arahy.Tifrunner.gnm1.ann1.T59QJ9 Arachis hypogaea HOM05D005389 ORTHO05D008484 1.0e-19 100.5 78 66.7
AUR62032098 Chenopodium quinoa HOM05D005389 ORTHO05D008484 1.0e-19 100.5 83 61.4
AUR62037862 Chenopodium quinoa HOM05D005389 ORTHO05D008484 1.0e-19 100.5 83 61.4
Gohir.A07G218100 Gossypium hirsutum HOM05D005389 ORTHO05D008484 1.0e-19 100.5 79 65.8
Cfa007465 Carpinus fangiana HOM05D005389 ORTHO05D008484 1.8e-19 99.8 76 65.8
Haze_14630 Corylus avellana HOM05D005389 ORTHO05D008484 1.8e-19 99.8 85 58.8
Gohir.D07G225200 Gossypium hirsutum HOM05D005389 ORTHO05D008484 1.8e-19 99.8 79 65.8
Aa31LG5G10500 Aethionema arabicum HOM05D005389 ORTHO05D008484 2.3e-19 99.4 83 63.9
Glyma.01G077400 Glycine max HOM05D005389 ORTHO05D008484 3.0e-19 99.0 78 64.1
MD17G1039500 Malus domestica HOM05D005389 ORTHO05D008484 3.0e-19 99.0 65 70.8
TPR.G36209 Trifolium pratense HOM05D005389 ORTHO05D022799 3.0e-19 99.0 83 61.4
Atru.chr8.2421 Acer truncatum HOM05D005389 ORTHO05D008484 3.9e-19 98.6 78 66.7
PSO161G0132 Papaver somniferum HOM05D005389 ORTHO05D008484 3.9e-19 98.6 80 65.0
PGR142G1957 Punica granatum HOM05D005389 ORTHO05D008484 3.9e-19 98.6 79 63.3
AT3G01380 Arabidopsis thaliana HOM05D005389 ORTHO05D008484 5.1e-19 98.2 83 63.9
Carub.0003s0071 Capsella rubella HOM05D005389 ORTHO05D008484 5.1e-19 98.2 83 63.9
Hma1.2p1_0697F.1_g204985 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 5.1e-19 98.2 64 73.4
Hma1.2p1_1975F.1_g309760 Hydrangea macrophylla HOM05D005389 ORTHO05D008484 5.1e-19 98.2 64 73.4
Lalb_Chr21g0316351 Lupinus albus HOM05D005389 ORTHO05D008484 5.1e-19 98.2 78 62.8
GSVIVG01032529001 Vitis vinifera HOM05D005389 ORTHO05D008484 5.1e-19 98.2 75 65.3
AL3G10820 Arabidopsis lyrata HOM05D005389 ORTHO05D008484 6.7e-19 97.8 83 62.7
MD09G1038400 Malus domestica HOM05D005389 ORTHO05D008484 6.7e-19 97.8 64 71.9
TWI36G1051 Tripterygium wilfordii HOM05D005389 ORTHO05D008484 6.7e-19 97.8 78 64.1
Gorai.001G259600 Gossypium raimondii HOM05D005389 ORTHO05D008484 1.1e-18 97.1 79 64.6
Solyc02g087170.4 Solanum lycopersicum HOM05D005389 ORTHO05D008484 1.1e-18 97.1 82 62.2
Sopen02g031910 Solanum pennellii HOM05D005389 ORTHO05D008484 1.1e-18 97.1 82 62.2
Thhalv10021056m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.5e-18 96.7 84 61.9
Thhalv10022528m.g Eutrema salsugineum HOM05D005389 ORTHO05D008484 1.5e-18 96.7 84 61.9
CAN.G206.54 Capsicum annuum HOM05D005389 ORTHO05D008484 1.9e-18 96.3 82 61.0
Gorai.010G191700 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.9e-18 96.3 75 68.0
Medtr7g030060 Medicago truncatula HOM05D005389 ORTHO05D008484 1.9e-18 96.3 81 61.7
Medtr7g038700 Medicago truncatula HOM05D005389 ORTHO05D008484 1.9e-18 96.3 81 61.7
PSO478G0736 Papaver somniferum HOM05D005389 ORTHO05D008484 2.5e-18 95.9 80 63.8
Migut.H00153 Erythranthe guttata HOM05D005389 ORTHO05D008484 3.3e-18 95.5 79 65.8
SalBow1G5751 Salvia bowleyana HOM05D005389 ORTHO05D008484 3.3e-18 95.5 78 66.7
PGSC0003DMG400000509 Solanum tuberosum HOM05D005389 ORTHO05D008484 3.3e-18 95.5 82 61.0
CDE04G3020 Ceratophyllum demersum HOM05D005389 ORTHO05D008484 4.3e-18 95.1 78 66.7
Sabra16G0230200 Salix brachista HOM05D005389 ORTHO05D008484 5.6e-18 94.7 75 66.7
Ah.16g106960 Amaranthus hybridus HOM05D005389 ORTHO05D008484 7.4e-18 94.4 82 58.5
A05p44600 Brassica napus HOM05D005389 ORTHO05D008484 9.6e-18 94.0 86 59.3
BraA05t23196Z Brassica rapa HOM05D005389 ORTHO05D008484 9.6e-18 94.0 86 59.3
Gohir.D06G037575 Gossypium hirsutum HOM05D005389 ORTHO05D022799 9.6e-18 94.0 75 65.3
Gorai.011G193500 Gossypium raimondii HOM05D005389 ORTHO05D022799 9.6e-18 94.0 75 65.3
THA.LOC104821073 Tarenaya hassleriana HOM05D005389 ORTHO05D008484 9.6e-18 94.0 81 59.3
BcaC05g30466 Brassica carinata HOM05D005389 ORTHO05D008484 1.3e-17 93.6 89 58.4
C07p01310 Brassica napus HOM05D005389 ORTHO05D008484 1.3e-17 93.6 87 58.6
Lj1g0011358 Lotus japonicus HOM05D005389 ORTHO05D008484 1.3e-17 93.6 78 61.5
Psat3g165760 Pisum sativum HOM05D005389 ORTHO05D008484 1.3e-17 93.6 81 61.7
Prupe.3G279400 Prunus persica HOM05D005389 ORTHO05D008484 1.6e-17 93.2 62 72.6
C09p75190 Brassica napus HOM05D005389 ORTHO05D008484 2.8e-17 92.4 87 57.5
Potri.001G350700 Populus trichocarpa HOM05D005389 ORTHO05D008484 2.8e-17 92.4 75 62.7
BolC5t35145H Brassica oleracea HOM05D005389 ORTHO05D008484 3.6e-17 92.0 58 74.1
DCAR_013961 Daucus carota HOM05D005389 ORTHO05D008484 3.6e-17 92.0 69 65.2
Sp3g00690 Schrenkiella parvula HOM05D005389 ORTHO05D008484 3.6e-17 92.0 86 58.1
CARHR075590 Cardamine hirsuta HOM05D005389 ORTHO05D008484 4.8e-17 91.7 84 59.5
Ca_19612_v3 Cicer arietinum L. HOM05D005389 ORTHO05D008484 4.8e-17 91.7 79 62.0
Prupe.2G019300 Prunus persica HOM05D005389 ORTHO05D008484 4.8e-17 91.7 62 71.0
Lju41A31T33 Lonicera japonica HOM05D005389 ORTHO05D008484 6.2e-17 91.3 86 60.5
RcHm_v2.0_Chr2g0170441 Rosa chinensis HOM05D005389 ORTHO05D008484 6.2e-17 91.3 69 68.1
SGA_v2.0_scaffold135G34838 Striga asiatica HOM05D005389 ORTHO05D008484 6.2e-17 91.3 78 64.1
Gohir.D05G349750 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.1e-16 90.5 79 62.0
CSS0036605 Camellia sinensis var. sinensis HOM05D005389 ORTHO05D008484 1.8e-16 89.7 57 75.4
FvH4_6g50180 Fragaria vesca HOM05D005389 ORTHO05D008484 2.4e-16 89.4 79 60.8
Sc06g0002580 Simmondsia chinensis HOM05D005389 ORTHO05D008484 3.1e-16 89.0 59 76.3
Aqoxy3G00899 Aquilegia oxysepala HOM05D005389 ORTHO05D008484 4.0e-16 88.6 58 79.3
Hund19981 Selenicereus undatus HOM05D005389 ORTHO05D008484 5.3e-16 88.2 72 62.5
FAN02G4477 Fragaria x ananassa HOM05D005389 ORTHO05D008484 6.9e-16 87.8 69 68.1
FAN09G2300 Fragaria x ananassa HOM05D005389 ORTHO05D008484 6.9e-16 87.8 57 75.4
FAN14G3523 Fragaria x ananassa HOM05D005389 ORTHO05D008484 6.9e-16 87.8 69 68.1
ATR0800G105 Amborella trichopoda HOM05D005389 ORTHO05D008484 1.5e-15 86.7 59 69.5
Gohir.D08G162051 Gossypium hirsutum HOM05D005389 ORTHO05D022799 1.5e-15 86.7 75 61.3
FAN05G2940 Fragaria x ananassa HOM05D005389 ORTHO05D008484 2.0e-15 86.3 69 66.7
HPP92_017062 Vanilla planifolia HOM05D005389 ORTHO05D008484 3.4e-15 85.5 61 68.9
Zm00001eb245310 Zea mays HOM05D005389 ORTHO05D008484 5.8e-15 84.7 70 67.1
Os02g0581000 Oryza sativa ssp. japonica HOM05D005389 ORTHO05D008484 8.4e-14 80.9 54 75.9
AagrBONN_evm.TU.Sc2ySwM_368.926 Anthoceros agrestis HOM05D005389 ORTHO05D008484 1.6e-12 76.6 57 64.9
SMO244G0055 Selaginella moellendorffii HOM05D005389 ORTHO05D008484 2.1e-12 76.3 54 63.0
Mapoly0007s0201 Marchantia polymorpha HOM05D005389 ORTHO05D008484 3.9e-11 72.0 52 63.5
Pp3c17_22750 Physcomitrium patens HOM05D005389 ORTHO05D008484 5.3e-08 61.6 53 58.5
Gorai.007G302600 Gossypium raimondii HOM05D000602 ORTHO05D010708 2.0e-07 59.7 35 80.0
Gohir.D11G253466 Gossypium hirsutum HOM05D005389 ORTHO05D017049 5.8e-07 58.2 35 80.0
Gorai.007G272300 Gossypium raimondii HOM05D005389 ORTHO05D017049 5.8e-07 58.2 35 80.0
Gohir.D01G051322 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.0e-06 57.4 35 80.0
Gohir.D01G103701 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.3e-06 57.0 35 80.0
Gohir.D07G069451 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.3e-06 57.0 35 80.0
Gohir.D07G180351 Gossypium hirsutum HOM05D005389 ORTHO05D017049 1.3e-06 57.0 35 80.0
Gorai.008G095000 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.3e-06 57.0 35 80.0
Gorai.009G374100 Gossypium raimondii HOM05D005389 ORTHO05D017049 1.3e-06 57.0 35 80.0
Gohir.D03G059266 Gossypium hirsutum HOM05D005389 ORTHO05D047261 2.2e-06 56.2 35 80.0
Gorai.003G063200 Gossypium raimondii HOM05D005389 ORTHO05D047261 2.2e-06 56.2 35 80.0


User provided reference genes

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