Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 3.5e-55 218.0 108 100.0
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 6.0e-39 164.1 93 89.2
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.5e-37 159.5 91 85.7
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 3.3e-37 158.3 91 86.8
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 7.4e-37 157.1 90 88.9
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.1e-35 153.3 92 81.5
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 2.4e-35 152.1 92 80.4
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 6.9e-35 150.6 93 79.6
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 1.5e-34 149.4 92 78.3
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 2.0e-34 149.1 92 78.3
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 2.0e-34 149.1 92 78.3
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.0e-34 149.1 92 78.3
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 2.0e-34 149.1 92 78.3
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 2.0e-34 149.1 92 78.3
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 4.5e-34 147.9 93 77.4
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 4.5e-34 147.9 93 77.4
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 4.5e-34 147.9 92 78.3
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 4.5e-34 147.9 93 79.6
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 4.5e-34 147.9 92 78.3
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 5.9e-34 147.5 92 77.2
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 7.6e-34 147.1 93 76.3
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 7.6e-34 147.1 93 77.4
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 1.0e-33 146.7 92 78.3
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 1.0e-33 146.7 92 77.2
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 1.3e-33 146.4 93 75.3
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 1.3e-33 146.4 95 74.7
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 2.2e-33 145.6 92 77.2
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 2.2e-33 145.6 91 75.8
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 2.2e-33 145.6 92 77.2
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 2.2e-33 145.6 92 75.0
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.2e-33 145.6 92 75.0
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.2e-33 145.6 92 75.0
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 2.9e-33 145.2 93 75.3
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 5.0e-33 144.4 92 76.1
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 5.0e-33 144.4 92 76.1
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 5.0e-33 144.4 92 75.0
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 6.5e-33 144.1 92 75.0
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 6.5e-33 144.1 92 77.2
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 6.5e-33 144.1 91 76.9
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 6.5e-33 144.1 92 76.1
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 6.5e-33 144.1 92 76.1
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 6.5e-33 144.1 92 76.1
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.1e-32 143.3 92 73.9
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.1e-32 143.3 92 73.9
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 1.4e-32 142.9 92 75.0
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 1.4e-32 142.9 92 75.0
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 1.4e-32 142.9 92 72.8
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 1.9e-32 142.5 92 75.0
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 2.5e-32 142.1 87 78.2
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 2.5e-32 142.1 93 74.2
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 2.5e-32 142.1 92 75.0
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 3.2e-32 141.7 92 72.8
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 3.2e-32 141.7 92 73.9
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 4.2e-32 141.4 92 75.0
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 4.2e-32 141.4 92 72.8
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.2e-32 141.4 92 71.7
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.2e-32 141.4 92 72.8
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 4.2e-32 141.4 86 79.1
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 4.2e-32 141.4 92 76.1
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 5.5e-32 141.0 93 74.2
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 7.2e-32 140.6 92 71.7
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 7.2e-32 140.6 92 71.7
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 9.3e-32 140.2 92 71.7
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 9.3e-32 140.2 92 71.7
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 9.3e-32 140.2 93 74.2
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 9.3e-32 140.2 92 72.8
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 1.2e-31 139.8 92 75.0
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 1.2e-31 139.8 88 75.0
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 1.2e-31 139.8 88 75.0
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 1.6e-31 139.4 92 73.9
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 2.1e-31 139.0 85 77.6
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 2.1e-31 139.0 85 77.6
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 2.1e-31 139.0 92 75.0
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 2.1e-31 139.0 89 76.4
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 2.7e-31 138.7 92 70.7
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 4.6e-31 137.9 85 78.8
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 4.6e-31 137.9 92 73.9
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 6.1e-31 137.5 92 71.7
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 6.1e-31 137.5 80 83.8
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 7.9e-31 137.1 92 72.8
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 1.0e-30 136.7 92 71.7
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 1.0e-30 136.7 92 71.7
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 1.8e-30 136.0 86 76.7
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 1.8e-30 136.0 92 72.8
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 1.8e-30 136.0 93 72.0
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 1.8e-30 136.0 93 72.0
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 2.3e-30 135.6 92 71.7
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.3e-30 135.6 86 74.4
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 3.9e-30 134.8 92 69.6
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 3.9e-30 134.8 93 72.0
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 5.1e-30 134.4 93 72.0
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 5.1e-30 134.4 91 72.5
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 6.7e-30 134.0 78 82.1
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 6.7e-30 134.0 79 79.7
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 6.7e-30 134.0 92 70.7
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 8.8e-30 133.7 79 82.3
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.8e-30 133.7 83 77.1
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 8.8e-30 133.7 83 77.1
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.1e-29 133.3 82 78.0
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.5e-29 132.9 89 70.8
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 1.5e-29 132.9 92 68.5
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.9e-29 132.5 89 70.8
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 2.5e-29 132.1 92 68.5
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 2.5e-29 132.1 86 77.9
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 3.3e-29 131.7 88 70.5
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 4.3e-29 131.3 92 69.6
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 5.7e-29 131.0 89 69.7
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 5.7e-29 131.0 93 71.0
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 7.4e-29 130.6 121 59.5
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 7.4e-29 130.6 93 71.0
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 9.7e-29 130.2 95 67.4
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 2.8e-28 128.6 88 69.3
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 3.7e-28 128.3 93 67.7
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 3.7e-28 128.3 92 68.5
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 4.8e-28 127.9 93 68.8
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 4.8e-28 127.9 93 68.8
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 4.8e-28 127.9 93 68.8
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 4.8e-28 127.9 93 68.8
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 4.8e-28 127.9 93 68.8
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 4.8e-28 127.9 85 69.4
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 8.2e-28 127.1 115 58.3
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 1.8e-27 125.9 85 74.1
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 1.8e-27 125.9 88 68.2
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 1.8e-27 125.9 88 68.2
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 1.8e-27 125.9 93 68.8
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 2.4e-27 125.6 88 68.2
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 2.4e-27 125.6 88 68.2
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 3.1e-27 125.2 88 68.2
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 5.3e-27 124.4 70 84.3
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 9.1e-27 123.6 92 68.5
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 1.2e-26 123.2 101 66.3
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.5e-26 122.9 91 69.2
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 2.6e-26 122.1 76 77.6
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 3.4e-26 121.7 70 84.3
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 4.5e-26 121.3 70 84.3
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 7.7e-26 120.6 71 83.1
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.3e-25 119.8 71 80.3
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.9e-25 118.6 70 81.4
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 5.0e-25 117.9 70 78.6
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.9e-24 115.9 71 76.1
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 4.2e-24 114.8 71 80.3
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 2.1e-23 112.5 71 78.9
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 3.9e-22 108.2 71 74.6
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 8.8e-22 107.1 67 73.1
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 3.3e-21 105.1 92 58.7
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 1.7e-20 102.8 71 74.6
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 8.2e-20 100.5 61 77.0
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 1.2e-18 96.7 65 73.8
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 4.5e-18 94.7 76 59.2
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 3.8e-17 91.7 81 56.8
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 3.8e-17 91.7 97 50.5
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 5.5e-16 87.8 90 57.8
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 7.2e-16 87.4 76 55.3
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-14 82.8 58 69.0
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.3e-14 82.4 51 74.5
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.3e-14 82.4 51 74.5
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.3e-14 82.4 51 74.5
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.3e-14 82.4 51 74.5
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 5.2e-14 81.3 54 74.1
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 7.4e-13 77.4 63 55.6
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 7.4e-13 77.4 49 77.6
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 7.4e-13 77.4 49 75.5
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.2e-12 75.9 47 72.3
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.8e-12 75.5 49 71.4
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 1.6e-10 69.7 54 61.1
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 1.3e-09 66.6 43 72.1


User provided reference genes

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