Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0162361 Helianthus annuus HOM05D003947 ORTHO05D004614 3.5e-115 418.3 211 100.0
HanXRQChr10g0278611 Helianthus annuus HOM05D003947 ORTHO05D004614 4.9e-85 318.2 214 80.4
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 5.4e-68 261.5 204 70.1
Lsat_1_v5_gn_6_101640 Lactuca sativa HOM05D003947 ORTHO05D004614 7.9e-51 204.5 219 54.3
Peaxi162Scf00360g00029 Petunia axillaris HOM05D003947 ORTHO05D004614 9.6e-49 197.6 217 53.9
Nitab4.5_0000099g0180 Nicotiana tabacum HOM05D003947 ORTHO05D004614 1.1e-47 194.1 220 53.2
Nitab4.5_0002812g0010 Nicotiana tabacum HOM05D003947 ORTHO05D004614 1.1e-47 194.1 217 52.1
Dinv41043 Davidia involucrata HOM05D003947 ORTHO05D004614 1.8e-47 193.4 217 53.0
CSS0022992 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 3.1e-47 192.6 217 52.5
Manes.02G182900 Manihot esculenta HOM05D003947 ORTHO05D004614 9.0e-47 191.0 217 54.8
Sabra02G0051800 Salix brachista HOM05D003947 ORTHO05D004614 1.2e-46 190.7 218 55.5
Cc10_g15190 Coffea canephora HOM05D003947 ORTHO05D004614 1.5e-46 190.3 217 53.9
Hma1.2p1_0678F.1_g202000 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 2.6e-46 189.5 217 53.5
Hma1.2p1_0358F.1_g134715 Hydrangea macrophylla HOM05D003947 ORTHO05D004614 4.5e-46 188.7 219 52.1
Solyc04g071970.4 Solanum lycopersicum HOM05D003947 ORTHO05D004614 4.5e-46 188.7 214 51.9
Sopen04g027950 Solanum pennellii HOM05D003947 ORTHO05D004614 4.5e-46 188.7 214 51.9
Manes.18G094500 Manihot esculenta HOM05D003947 ORTHO05D004614 5.8e-46 188.3 220 52.3
MSTRG.1106 Avicennia marina HOM05D003947 ORTHO05D004614 1.0e-45 187.6 224 52.7
Rhsim11G0087300 Rhododendron simsii HOM05D003947 ORTHO05D004614 1.3e-45 187.2 217 51.6
Actinidia29546 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.7e-45 186.8 217 50.7
PGSC0003DMG401025066 Solanum tuberosum HOM05D003947 ORTHO05D004614 2.9e-45 186.0 214 50.9
Potri.005G196300 Populus trichocarpa HOM05D003947 ORTHO05D004614 3.8e-45 185.7 217 53.9
Duzib116G0212 Durio zibethinus HOM05D003947 ORTHO05D004614 1.1e-44 184.1 216 50.5
Migut.C00963 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.1e-44 184.1 223 53.4
Actinidia17770 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.4e-44 183.7 217 51.6
Prupe.8G040000 Prunus persica HOM05D003947 ORTHO05D004614 1.9e-44 183.3 216 51.9
Sabra05G0149600 Salix brachista HOM05D003947 ORTHO05D004614 1.9e-44 183.3 217 53.0
Psat6g190840 Pisum sativum HOM05D003947 ORTHO05D004614 7.1e-44 181.4 219 51.6
GSVIVG01034579001 Vitis vinifera HOM05D003947 ORTHO05D004614 9.3e-44 181.0 217 51.6
TWI60G0849 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 1.2e-43 180.6 217 49.8
CANSAT25G3237 Cannabis sativa HOM05D003947 ORTHO05D004614 2.1e-43 179.9 215 49.8
Thecc.08G158700 Theobroma cacao HOM05D003947 ORTHO05D004614 2.1e-43 179.9 216 50.0
CiPaw.15G012800 Carya illinoinensis HOM05D003947 ORTHO05D004614 3.5e-43 179.1 218 50.9
CiPaw.16G008700 Carya illinoinensis HOM05D003947 ORTHO05D004614 6.1e-43 178.3 214 50.0
TWI32G0514 Tripterygium wilfordii HOM05D003947 ORTHO05D004614 6.1e-43 178.3 222 48.6
Gorai.005G077400 Gossypium raimondii HOM05D003947 ORTHO05D004614 7.9e-43 177.9 218 50.9
Ca_10666_v3 Cicer arietinum L. HOM05D003947 ORTHO05D004614 1.0e-42 177.6 221 49.8
arahy.Tifrunner.gnm1.ann1.8MR9WY Arachis hypogaea HOM05D003947 ORTHO05D004614 1.8e-42 176.8 215 51.6
Gohir.A02G062801 Gossypium hirsutum HOM05D003947 ORTHO05D004614 1.8e-42 176.8 218 50.9
MD10G1033900 Malus domestica HOM05D003947 ORTHO05D004614 1.8e-42 176.8 217 50.7
Cfa018286 Carpinus fangiana HOM05D003947 ORTHO05D004614 2.3e-42 176.4 216 50.5
Gohir.D02G068500 Gossypium hirsutum HOM05D003947 ORTHO05D004614 2.3e-42 176.4 218 50.5
Atru.chr13.2012 Acer truncatum HOM05D003947 ORTHO05D004614 1.5e-41 173.7 220 50.9
VMungo0720G0983 Vigna mungo HOM05D003947 ORTHO05D004614 1.5e-41 173.7 217 50.7
Lj5g0019118 Lotus japonicus HOM05D003947 ORTHO05D004614 1.9e-41 173.3 220 50.9
MD05G1032900 Malus domestica HOM05D003947 ORTHO05D004614 1.9e-41 173.3 217 49.8
MSTRG.24219 Avicennia marina HOM05D003947 ORTHO05D004614 2.5e-41 172.9 225 49.8
Glyma.10G221900 Glycine max HOM05D003947 ORTHO05D004614 2.5e-41 172.9 217 50.7
FAN27G1126 Fragaria x ananassa HOM05D003947 ORTHO05D004614 3.3e-41 172.6 216 46.8
Gohir.A05G246100 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.3e-41 172.6 217 49.8
Gohir.D05G247600 Gossypium hirsutum HOM05D003947 ORTHO05D004614 3.3e-41 172.6 217 49.3
Gorai.009G258400 Gossypium raimondii HOM05D003947 ORTHO05D004614 3.3e-41 172.6 218 50.0
Ciclev10002453m.g Citrus clementina HOM05D003947 ORTHO05D004614 4.3e-41 172.2 222 53.2
Glyma.20G169600 Glycine max HOM05D003947 ORTHO05D004614 4.3e-41 172.2 217 49.8
Potri.002G064900 Populus trichocarpa HOM05D003947 ORTHO05D004614 4.3e-41 172.2 222 50.9
Phvul.007G083100 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 5.7e-41 171.8 217 50.7
FvH4_2g13060 Fragaria vesca HOM05D003947 ORTHO05D004614 7.4e-41 171.4 216 47.2
Duzib093G0177 Durio zibethinus HOM05D003947 ORTHO05D004614 1.3e-40 170.6 216 48.1
RcHm_v2.0_Chr6g0274321 Rosa chinensis HOM05D003947 ORTHO05D004614 1.3e-40 170.6 215 47.9
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.2e-40 169.9 215 48.4
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.8e-40 169.5 215 46.5
Lalb_Chr21g0305571 Lupinus albus HOM05D003947 ORTHO05D004614 3.7e-40 169.1 221 48.9
Lalb_Chr02g0141531 Lupinus albus HOM05D003947 ORTHO05D004614 4.8e-40 168.7 221 48.4
Sed0008617 Sechium edule HOM05D003947 ORTHO05D004614 4.1e-39 165.6 219 47.0
PSO675G7401 Papaver somniferum HOM05D003947 ORTHO05D004614 5.3e-39 165.2 216 50.5
MSTRG.25300 Avicennia marina HOM05D003947 ORTHO05D004614 6.9e-39 164.9 226 47.8
Actinidia04751 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.2e-38 164.1 211 45.0
Eucgr.F04191 Eucalyptus grandis HOM05D003947 ORTHO05D004614 1.2e-38 164.1 216 47.2
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.0e-38 163.3 211 46.4
PSO541G4258 Papaver somniferum HOM05D003947 ORTHO05D004614 2.0e-38 163.3 219 49.8
PGR044G0664 Punica granatum HOM05D003947 ORTHO05D004614 2.6e-38 162.9 217 47.0
SalBow6G2315 Salvia bowleyana HOM05D003947 ORTHO05D004614 3.4e-38 162.5 198 51.0
Sc02g0003850 Simmondsia chinensis HOM05D003947 ORTHO05D004614 4.5e-38 162.2 222 45.9
vmacro01489 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 1.3e-37 160.6 192 51.6
Medtr1g098260 Medicago truncatula HOM05D003947 ORTHO05D004614 1.7e-37 160.2 238 45.0
THA.LOC104806764 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 6.5e-37 158.3 214 46.3
Migut.N03200 Erythranthe guttata HOM05D003947 ORTHO05D004614 1.1e-36 157.5 229 44.5
DCAR_001161 Daucus carota HOM05D003947 ORTHO05D004614 1.4e-36 157.1 200 50.0
arahy.Tifrunner.gnm1.ann1.H1TMWI Arachis hypogaea HOM05D003947 ORTHO05D004614 3.2e-36 156.0 221 46.6
SGA_v2.0_scaffold108G30867 Striga asiatica HOM05D003947 ORTHO05D004614 3.2e-36 156.0 219 47.5
Hund17479 Selenicereus undatus HOM05D003947 ORTHO05D004614 7.2e-36 154.8 213 46.9
vmacro21121 Vaccinium macrocarpon HOM05D003947 ORTHO05D004614 7.2e-36 154.8 194 48.5
Thhalv10008850m.g Eutrema salsugineum HOM05D003947 ORTHO05D004614 1.2e-35 154.1 211 44.5
COL.COLO4_03360 Corchorus olitorius HOM05D003947 ORTHO05D004614 2.7e-35 152.9 192 49.0
Oeu022056.3 Olea europaea HOM05D003947 ORTHO05D004614 3.6e-35 152.5 192 46.9
Oeu002064.1 Olea europaea HOM05D003947 ORTHO05D004614 4.6e-35 152.1 193 48.7
arahy.Tifrunner.gnm1.ann1.2W58SS Arachis hypogaea HOM05D003947 ORTHO05D004614 6.1e-35 151.8 221 46.2
SalBow7G0665 Salvia bowleyana HOM05D003947 ORTHO05D004614 6.1e-35 151.8 199 49.7
Haze_17801 Corylus avellana HOM05D003947 ORTHO05D004614 3.9e-34 149.1 193 51.3
Aa31LG6G8230 Aethionema arabicum HOM05D003947 ORTHO05D004614 5.1e-34 148.7 215 43.3
AL1G48450 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 5.1e-34 148.7 217 45.2
TAR625G1169 Trochodendron aralioides HOM05D003947 ORTHO05D004614 5.1e-34 148.7 191 48.7
Glyma.16G163700 Glycine max HOM05D003947 ORTHO05D004614 6.7e-34 148.3 220 45.5
Aa31LG7G6750 Aethionema arabicum HOM05D003947 ORTHO05D004614 8.8e-34 147.9 219 44.3
Dinv25896 Davidia involucrata HOM05D003947 ORTHO05D004614 8.8e-34 147.9 215 44.2
Lj7P382T65 Lonicera japonica HOM05D003947 ORTHO05D004614 8.8e-34 147.9 194 49.5
Oeu017623.1 Olea europaea HOM05D003947 ORTHO05D004614 8.8e-34 147.9 196 48.5
TAR628G1588 Trochodendron aralioides HOM05D003947 ORTHO05D004614 8.8e-34 147.9 191 49.7
Oeu051281.1 Olea europaea HOM05D003947 ORTHO05D004614 1.1e-33 147.5 195 49.2
HPP92_002802 Vanilla planifolia HOM05D003947 ORTHO05D004614 1.1e-33 147.5 215 44.2
THA.LOC104813088 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 2.0e-33 146.7 214 43.5
Aa31LG4G8980 Aethionema arabicum HOM05D003947 ORTHO05D004614 2.5e-33 146.4 217 44.2
Lsat_1_v5_gn_1_5261 Lactuca sativa HOM05D003947 ORTHO05D004614 2.5e-33 146.4 227 44.1
TAR376G1220 Trochodendron aralioides HOM05D003947 ORTHO05D004614 2.5e-33 146.4 216 44.4
arahy.Tifrunner.gnm1.ann1.P1AQDG Arachis hypogaea HOM05D003947 ORTHO05D004614 5.7e-33 145.2 193 49.7
QL02p038162 Quercus lobata HOM05D003947 ORTHO05D004614 5.7e-33 145.2 193 50.8
Aqoxy6G00408 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 7.4e-33 144.8 191 45.5
CSS0014660 Camellia sinensis var. sinensis HOM05D003947 ORTHO05D004614 7.4e-33 144.8 214 42.5
Glyma.02G079300 Glycine max HOM05D003947 ORTHO05D004614 7.4e-33 144.8 217 42.9
AL1G36340 Arabidopsis lyrata HOM05D003947 ORTHO05D004614 9.7e-33 144.4 221 44.3
AUR62034897 Chenopodium quinoa HOM05D003947 ORTHO05D004614 9.7e-33 144.4 191 48.2
CARHR033390 Cardamine hirsuta HOM05D003947 ORTHO05D004614 1.3e-32 144.1 219 43.8
BcaB07g33023 Brassica carinata HOM05D030501 ORTHO05D004614 1.7e-32 143.7 212 42.9
MBI04_g08942_MAGBIO Magnolia biondii HOM05D003947 ORTHO05D004614 1.7e-32 143.7 253 41.1
SGA_v2.0_scaffold195G40776 Striga asiatica HOM05D003947 ORTHO05D004614 1.7e-32 143.7 198 49.5
Cpa.g.sc26.88 Carica papaya HOM05D003947 ORTHO05D004614 2.2e-32 143.3 191 49.2
THA.LOC104810422 Tarenaya hassleriana HOM05D003947 ORTHO05D004614 2.2e-32 143.3 217 44.7
Sp1g29270 Schrenkiella parvula HOM05D003947 ORTHO05D004614 2.8e-32 142.9 211 43.1
ClCG08G003050 Citrullus lanatus HOM05D003947 ORTHO05D004614 3.7e-32 142.5 207 45.4
Duzib041G0104 Durio zibethinus HOM05D003947 ORTHO05D004614 4.8e-32 142.1 192 47.4
AT1G22790 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.4e-31 139.8 223 44.4
BolC5t32518H Brassica oleracea HOM05D003947 ORTHO05D004614 4.1e-31 139.0 217 40.6
Os01g0589700 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 5.3e-31 138.7 213 43.2
Carub.0001s3209 Capsella rubella HOM05D003947 ORTHO05D004614 9.1e-31 137.9 216 41.2
TAR381G1088 Trochodendron aralioides HOM05D003947 ORTHO05D004614 1.2e-30 137.5 189 47.1
Zm00001eb160770 Zea mays HOM05D003947 ORTHO05D004614 1.5e-30 137.1 213 40.8
BcaC05g27781 Brassica carinata HOM05D003947 ORTHO05D004614 2.0e-30 136.7 213 42.7
Lj4P703T37 Lonicera japonica HOM05D003947 ORTHO05D004614 2.0e-30 136.7 201 46.8
Sed0016828 Sechium edule HOM05D003947 ORTHO05D004614 2.6e-30 136.3 194 45.9
Ah.05g168170 Amaranthus hybridus HOM05D003947 ORTHO05D004614 3.4e-30 136.0 193 46.1
Carub.0001s2230 Capsella rubella HOM05D003947 ORTHO05D004614 3.4e-30 136.0 224 43.8
CARHR023150 Cardamine hirsuta HOM05D003947 ORTHO05D004614 3.4e-30 136.0 227 44.9
Hund26679 Selenicereus undatus HOM05D003947 ORTHO05D004614 5.9e-30 135.2 189 46.0
BcaC08g43824 Brassica carinata HOM05D003947 ORTHO05D004614 1.7e-29 133.7 212 40.6
BolC6t36345H Brassica oleracea HOM05D003947 ORTHO05D004614 1.7e-29 133.7 212 40.6
A05p24080 Brassica napus HOM05D003947 ORTHO05D004614 2.2e-29 133.3 217 40.6
C06p12080 Brassica napus HOM05D003947 ORTHO05D004614 2.2e-29 133.3 212 40.6
AT1G34010 Arabidopsis thaliana HOM05D003947 ORTHO05D004614 2.9e-29 132.9 213 40.4
A09p32460 Brassica napus HOM05D003947 ORTHO05D004614 5.0e-29 132.1 211 40.8
unitig_32.g11256 Utricularia gibba HOM05D003947 ORTHO05D004614 1.9e-28 130.2 231 41.1
VMungo0464G0903 Vigna mungo HOM05D003947 ORTHO05D004614 9.4e-28 127.9 189 42.9
Nn1g06005 Nelumbo nucifera HOM05D003947 ORTHO05D004614 1.6e-27 127.1 218 42.2
PGR042G2534 Punica granatum HOM05D003947 ORTHO05D004614 7.9e-27 124.8 214 41.6
Lalb_Chr19g0130101 Lupinus albus HOM05D003947 ORTHO05D004614 3.9e-26 122.5 215 40.9
Rhsim06G0091600 Rhododendron simsii HOM05D003947 ORTHO05D004614 6.7e-26 121.7 205 43.4
Zm00001eb357510 Zea mays HOM05D003947 ORTHO05D004614 6.7e-26 121.7 188 41.5
Lj2g0016258 Lotus japonicus HOM05D003947 ORTHO05D004614 4.4e-25 119.0 226 42.5
MELO3C008326.2 Cucumis melo HOM05D003947 ORTHO05D004614 5.7e-25 118.6 225 41.8
BraA09t38788Z Brassica rapa HOM05D003947 ORTHO05D004614 2.2e-24 116.7 187 41.7
CsaV3_6G005040 Cucumis sativus L. HOM05D003947 ORTHO05D004614 2.2e-24 116.7 222 41.0
TPR.G17018 Trifolium pratense HOM05D003947 ORTHO05D004614 3.7e-24 115.9 178 44.9
ClCG08G007400 Citrullus lanatus HOM05D003947 ORTHO05D004614 6.3e-24 115.2 223 41.3
C05p37750 Brassica napus HOM05D003947 ORTHO05D004614 1.1e-23 114.4 189 41.8
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 5.3e-23 112.1 193 39.4
Phvul.004G091200 Phaseolus vulgaris HOM05D003947 ORTHO05D004614 1.2e-22 110.9 192 41.1
Manes.16G051400 Manihot esculenta HOM05D003947 ORTHO05D004614 4.5e-22 109.0 159 48.4
PSO170G0396 Papaver somniferum HOM05D003947 ORTHO05D004614 3.2e-20 102.8 218 38.5
PSO700G0284 Papaver somniferum HOM05D003947 ORTHO05D004614 7.2e-20 101.7 219 40.2
Actinidia26828 Actinidia chinensis HOM05D003947 ORTHO05D004614 1.2e-19 100.9 171 36.3
ATR1120G111 Amborella trichopoda HOM05D003947 ORTHO05D004614 6.1e-19 98.6 230 37.0
BcaNung06442 Brassica carinata HOM05D003947 ORTHO05D004614 6.1e-19 98.6 238 35.7
Lsat_1_v5_gn_9_42121 Lactuca sativa HOM05D003947 ORTHO05D004614 6.1e-19 98.6 214 41.1
BraA09t39684Z Brassica rapa HOM05D003947 ORTHO05D004614 8.8e-18 94.7 225 36.9
SalBow7G0026 Salvia bowleyana HOM05D003947 ORTHO05D004614 1.2e-14 84.3 80 60.0
SHI09085 Sapria himalayana HOM05D003947 ORTHO05D004614 1.2e-14 84.3 193 37.3
Os05g0591450 Oryza sativa ssp. japonica HOM05D003947 ORTHO05D004614 5.9e-14 82.0 100 50.0
BolC5t30884H Brassica oleracea HOM05D003947 ORTHO05D004614 9.4e-12 74.7 234 34.2
BcaNung06106 Brassica carinata HOM05D003947 ORTHO05D004614 1.0e-10 71.2 176 34.1
A09p41960 Brassica napus HOM05D003947 ORTHO05D004614 2.3e-10 70.1 215 32.6
Sed0006124 Sechium edule HOM05D003947 ORTHO05D004614 3.0e-10 69.7 179 38.5
Sed0022469 Sechium edule HOM05D003947 ORTHO05D004614 6.8e-10 68.6 187 36.4
C05p21890 Brassica napus HOM05D003947 ORTHO05D004614 2.8e-08 63.2 166 32.5
Aqoxy5G02026 Aquilegia oxysepala HOM05D003947 ORTHO05D004614 4.1e-07 59.3 203 28.1


User provided reference genes

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