Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0160351 Helianthus annuus HOM05D006092 ORTHO05D007508 1.5e-74 282.7 141 100.0
HanXRQChr08g0232881 Helianthus annuus HOM05D006092 ORTHO05D007508 2.9e-65 251.9 147 87.8
Lsat_1_v5_gn_5_381 Lactuca sativa HOM05D006092 ORTHO05D007508 3.0e-62 241.9 147 83.0
Nitab4.5_0001622g0160 Nicotiana tabacum HOM05D006092 ORTHO05D007508 3.1e-59 231.9 148 80.4
ECA246G4981 Erigeron canadensis HOM05D006092 ORTHO05D007508 4.0e-59 231.5 148 82.4
Nitab4.5_0000611g0120 Nicotiana tabacum HOM05D006092 ORTHO05D007508 6.9e-59 230.7 148 80.4
Nitab4.5_0000611g0110 Nicotiana tabacum HOM05D006092 ORTHO05D007508 1.2e-58 229.9 148 80.4
Migut.M01583 Erythranthe guttata HOM05D006092 ORTHO05D007508 2.2e-57 225.7 150 78.7
CAN.G623.73 Capsicum annuum HOM05D006092 ORTHO05D007508 1.1e-56 223.4 149 79.2
Oeu013004.1 Olea europaea HOM05D006092 ORTHO05D007508 9.3e-56 220.3 150 78.7
Lj3g0000125 Lotus japonicus HOM05D006092 ORTHO05D007508 2.1e-55 219.2 132 83.3
Oeu006265.1 Olea europaea HOM05D006092 ORTHO05D007508 3.5e-55 218.4 151 78.8
MD03G1042800 Malus domestica HOM05D006092 ORTHO05D007508 7.9e-55 217.2 135 83.7
unitig_37.g11908 Utricularia gibba HOM05D006092 ORTHO05D007508 1.8e-54 216.1 146 77.4
TPR.G16714 Trifolium pratense HOM05D006092 ORTHO05D007508 3.9e-54 214.9 131 81.7
Psat5g231800 Pisum sativum HOM05D006092 ORTHO05D007508 5.1e-54 214.5 131 81.7
Sopen07g034330 Solanum pennellii HOM05D006092 ORTHO05D007508 5.1e-54 214.5 149 75.8
Solyc07g066150.1 Solanum lycopersicum HOM05D006092 ORTHO05D007508 6.7e-54 214.2 148 75.7
PGSC0003DMG400022249 Solanum tuberosum HOM05D006092 ORTHO05D007508 6.7e-54 214.2 149 75.8
Ciclev10009769m.g Citrus clementina HOM05D006092 ORTHO05D007508 8.7e-54 213.8 138 82.6
FvH4_3g41620 Fragaria vesca HOM05D006092 ORTHO05D007508 1.1e-53 213.4 135 79.3
FAN11G0712 Fragaria x ananassa HOM05D006092 ORTHO05D007508 1.1e-53 213.4 135 79.3
SalBow8G3834 Salvia bowleyana HOM05D006092 ORTHO05D007508 1.1e-53 213.4 152 75.0
Prupe.6G035200 Prunus persica HOM05D006092 ORTHO05D007508 1.9e-53 212.6 134 80.6
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 5.6e-53 211.1 135 78.5
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 7.4e-53 210.7 135 78.5
unitig_92.g28271 Utricularia gibba HOM05D006092 ORTHO05D007508 7.4e-53 210.7 143 76.9
GSVIVG01014842001 Vitis vinifera HOM05D006092 ORTHO05D007508 9.6e-53 210.3 139 79.1
Rhsim04G0007400 Rhododendron simsii HOM05D006092 ORTHO05D007508 1.6e-52 209.5 145 77.2
THA.LOC104810303 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 3.6e-52 208.4 142 76.1
SGA_v2.0_scaffold186G40234 Striga asiatica HOM05D006092 ORTHO05D007508 4.8e-52 208.0 145 75.9
TWI39G1159 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 6.2e-52 207.6 133 81.2
Nn1g07635 Nelumbo nucifera HOM05D006092 ORTHO05D007508 1.8e-51 206.1 170 67.6
TWI38G1372 Tripterygium wilfordii HOM05D006092 ORTHO05D007508 3.1e-51 205.3 133 80.5
Manes.01G006400 Manihot esculenta HOM05D006092 ORTHO05D007508 5.3e-51 204.5 151 72.8
QL08p000538 Quercus lobata HOM05D006092 ORTHO05D007508 5.3e-51 204.5 137 77.4
THA.LOC104822703 Tarenaya hassleriana HOM05D006092 ORTHO05D007508 5.3e-51 204.5 136 75.7
AL1G63740 Arabidopsis lyrata HOM05D006092 ORTHO05D007508 1.2e-50 203.4 136 75.0
Atru.chr2.3894 Acer truncatum HOM05D006092 ORTHO05D007508 2.0e-50 202.6 133 80.5
Nitab4.5_0000611g0130 Nicotiana tabacum HOM05D006092 ORTHO05D007508 2.0e-50 202.6 140 76.4
Aa31LG10G560 Aethionema arabicum HOM05D006092 ORTHO05D007508 2.6e-50 202.2 135 75.6
CANSAT11G0425 Cannabis sativa HOM05D006092 ORTHO05D007508 2.6e-50 202.2 142 78.9
Lalb_Chr18g0048631 Lupinus albus HOM05D006092 ORTHO05D007508 2.6e-50 202.2 136 74.3
CARHR045350 Cardamine hirsuta HOM05D006092 ORTHO05D007508 3.4e-50 201.8 136 74.3
Lj8P183T26 Lonicera japonica HOM05D006092 ORTHO05D007508 3.4e-50 201.8 117 83.8
MBI15_g47946_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 3.4e-50 201.8 171 67.3
CARHR087970 Cardamine hirsuta HOM05D006092 ORTHO05D007508 5.8e-50 201.1 136 76.5
Thecc.07G001800 Theobroma cacao HOM05D006092 ORTHO05D007508 5.8e-50 201.1 137 75.9
Cpa.g.sc12.69 Carica papaya HOM05D006092 ORTHO05D007508 9.9e-50 200.3 136 77.9
Sc07g0002210 Simmondsia chinensis HOM05D006092 ORTHO05D007508 9.9e-50 200.3 138 76.1
AT1G55670 Arabidopsis thaliana HOM05D006092 ORTHO05D007508 1.3e-49 199.9 136 74.3
Thhalv10011835m.g Eutrema salsugineum HOM05D006092 ORTHO05D007508 1.3e-49 199.9 137 75.2
Cfa016959 Carpinus fangiana HOM05D006092 ORTHO05D007508 1.7e-49 199.5 138 79.0
MBI15_g47073_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 1.7e-49 199.5 145 73.8
Phvul.005G004000 Phaseolus vulgaris HOM05D006092 ORTHO05D007508 2.9e-49 198.7 132 77.3
Gohir.A13G128600 Gossypium hirsutum HOM05D006092 ORTHO05D007508 3.8e-49 198.4 137 75.2
Haze_09914 Corylus avellana HOM05D006092 ORTHO05D007508 4.9e-49 198.0 130 79.2
Glyma.04G112800 Glycine max HOM05D006092 ORTHO05D007508 4.9e-49 198.0 134 77.6
ATR0751G135 Amborella trichopoda HOM05D006092 ORTHO05D007508 6.4e-49 197.6 166 68.1
PSO063G2976 Papaver somniferum HOM05D006092 ORTHO05D007508 8.4e-49 197.2 158 70.9
PSO782G4285 Papaver somniferum HOM05D006092 ORTHO05D007508 8.4e-49 197.2 158 70.9
VMungo1080G0991 Vigna mungo HOM05D006092 ORTHO05D007508 8.4e-49 197.2 130 77.7
Aqoxy4G02265 Aquilegia oxysepala HOM05D006092 ORTHO05D007508 1.1e-48 196.8 141 74.5
CDE05G1532 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 1.4e-48 196.4 142 73.2
Glyma.06G321900 Glycine max HOM05D006092 ORTHO05D007508 1.4e-48 196.4 135 76.3
Gohir.A04G001100 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.4e-48 196.4 135 76.3
Gorai.013G148000 Gossypium raimondii HOM05D006092 ORTHO05D007508 1.4e-48 196.4 137 74.5
ClCG10G004510 Citrullus lanatus HOM05D006092 ORTHO05D007508 1.9e-48 196.1 132 76.5
Gohir.D13G132000 Gossypium hirsutum HOM05D006092 ORTHO05D007508 1.9e-48 196.1 137 74.5
A05p17350 Brassica napus HOM05D006092 ORTHO05D007508 3.2e-48 195.3 136 73.5
BraA05t20631Z Brassica rapa HOM05D006092 ORTHO05D007508 3.2e-48 195.3 136 73.5
BcaC01g01548 Brassica carinata HOM05D006092 ORTHO05D007508 4.2e-48 194.9 137 74.5
BcaC08g44210 Brassica carinata HOM05D006092 ORTHO05D007508 4.2e-48 194.9 137 73.0
A08p00380 Brassica napus HOM05D006092 ORTHO05D007508 4.2e-48 194.9 136 74.3
C06p16180 Brassica napus HOM05D006092 ORTHO05D007508 4.2e-48 194.9 137 73.0
BolC3t21605H Brassica oleracea HOM05D006092 ORTHO05D007508 4.2e-48 194.9 137 74.5
BolC6t36815H Brassica oleracea HOM05D006092 ORTHO05D007508 4.2e-48 194.9 137 73.0
BraA08t32097Z Brassica rapa HOM05D006092 ORTHO05D007508 4.2e-48 194.9 136 74.3
Carub.0001s4419 Capsella rubella HOM05D006092 ORTHO05D007508 4.2e-48 194.9 137 73.7
arahy.Tifrunner.gnm1.ann1.4PD0PP Arachis hypogaea HOM05D006092 ORTHO05D007508 5.5e-48 194.5 149 69.1
BcaB04g16937 Brassica carinata HOM05D006092 ORTHO05D007508 5.5e-48 194.5 149 71.1
BcaC08g43644 Brassica carinata HOM05D006092 ORTHO05D007508 5.5e-48 194.5 137 74.5
A06p00060 Brassica napus HOM05D006092 ORTHO05D007508 5.5e-48 194.5 137 75.2
C03p93010 Brassica napus HOM05D006092 ORTHO05D007508 5.5e-48 194.5 137 74.5
C06p10630 Brassica napus HOM05D006092 ORTHO05D007508 5.5e-48 194.5 137 74.5
BolC6t36143H Brassica oleracea HOM05D006092 ORTHO05D007508 5.5e-48 194.5 137 74.5
BraA06t23221Z Brassica rapa HOM05D006092 ORTHO05D007508 5.5e-48 194.5 137 75.2
CDE11G0224 Ceratophyllum demersum HOM05D006092 ORTHO05D007508 5.5e-48 194.5 142 72.5
EL10Ac3g07451 Beta vulgaris HOM05D006092 ORTHO05D007508 7.1e-48 194.1 136 75.0
BcaB02g10807 Brassica carinata HOM05D006092 ORTHO05D007508 7.1e-48 194.1 138 72.5
BcaB07g33193 Brassica carinata HOM05D006092 ORTHO05D007508 7.1e-48 194.1 137 74.5
MELO3C014124.2 Cucumis melo HOM05D006092 ORTHO05D007508 7.1e-48 194.1 130 77.7
CsaV3_3G004330 Cucumis sativus L. HOM05D006092 ORTHO05D007508 9.3e-48 193.7 130 76.9
Potri.011G168700 Populus trichocarpa HOM05D006092 ORTHO05D007508 1.6e-47 193.0 136 77.9
PGR031G3987 Punica granatum HOM05D006092 ORTHO05D007508 1.6e-47 193.0 139 74.1
Sabra16G0320400 Salix brachista HOM05D006092 ORTHO05D007508 1.6e-47 193.0 136 76.5
Gorai.009G454900 Gossypium raimondii HOM05D006092 ORTHO05D007508 2.1e-47 192.6 138 73.9
Potri.001G471900 Populus trichocarpa HOM05D006092 ORTHO05D007508 2.1e-47 192.6 135 76.3
Sabra11G0138000 Salix brachista HOM05D006092 ORTHO05D007508 6.0e-47 191.0 136 76.5
COL.COLO4_07787 Corchorus olitorius HOM05D006092 ORTHO05D007508 1.0e-46 190.3 103 92.2
HPP92_022812 Vanilla planifolia HOM05D006092 ORTHO05D007508 1.0e-46 190.3 101 89.1
AUR62018553 Chenopodium quinoa HOM05D006092 ORTHO05D007508 1.8e-46 189.5 101 92.1
AUR62020866 Chenopodium quinoa HOM05D006092 ORTHO05D007508 1.8e-46 189.5 101 92.1
Ah.04g149440 Amaranthus hybridus HOM05D006092 ORTHO05D007508 3.0e-46 188.7 143 70.6
Eucgr.F03646 Eucalyptus grandis HOM05D006092 ORTHO05D007508 1.1e-45 186.8 138 72.5
Sed0026101 Sechium edule HOM05D006092 ORTHO05D007508 1.1e-45 186.8 131 74.0
Dinv40914 Davidia involucrata HOM05D006092 ORTHO05D007508 1.3e-44 183.3 140 71.4
Medtr3g010000 Medicago truncatula HOM05D006092 ORTHO05D007508 1.3e-44 183.3 135 68.9
Sed0012341 Sechium edule HOM05D006092 ORTHO05D007508 2.8e-44 182.2 140 69.3
Zm00001eb316290 Zea mays HOM05D006092 ORTHO05D007508 2.8e-44 182.2 138 68.8
MBI14_g12737_MAGBIO Magnolia biondii HOM05D006092 ORTHO05D007508 6.2e-44 181.0 169 62.1
Os09g0481200 Oryza sativa ssp. japonica HOM05D006092 ORTHO05D007508 6.2e-44 181.0 143 67.8
Zm00001eb101660 Zea mays HOM05D006092 ORTHO05D007508 4.0e-43 178.3 140 65.7
SEGI_13197 Sequoiadendron giganteum HOM05D006092 ORTHO05D007508 2.0e-42 176.0 102 82.4
SMO353G0046 Selaginella moellendorffii HOM05D006092 ORTHO05D007508 1.8e-35 152.9 97 73.2
Pp3c9_15440 Physcomitrium patens HOM05D006092 ORTHO05D007508 1.2e-34 150.2 101 65.3
Pp3c15_5850 Physcomitrium patens HOM05D006092 ORTHO05D007508 2.0e-34 149.4 143 55.2
AagrBONN_evm.TU.Sc2ySwM_228.5128 Anthoceros agrestis HOM05D006092 ORTHO05D007508 1.0e-33 147.1 120 60.8
Mapoly0038s0054 Marchantia polymorpha HOM05D006092 ORTHO05D007508 6.5e-33 144.4 96 69.8
CiPaw.11G210500 Carya illinoinensis HOM05D006092 ORTHO05D007508 3.2e-32 142.1 133 61.7
CBR_g28070 Chara braunii HOM05D006092 ORTHO05D007508 7.9e-31 137.5 97 64.9
Sp1g41280 Schrenkiella parvula HOM05D006092 ORTHO05D007508 9.7e-29 130.6 135 54.8
TAR627G0509 Trochodendron aralioides HOM05D006092 ORTHO05D007508 1.1e-27 127.1 74 82.4
PGSC0003DMG400006702 Solanum tuberosum HOM05D006092 ORTHO05D007508 5.1e-22 108.2 116 55.2
PRCOL_00006984 Prasinoderma coloniale HOM05D006092 ORTHO05D007508 9.7e-21 104.0 90 55.6
MCO01G478 Micromonas commoda HOM05D006092 ORTHO05D007508 5.9e-18 94.7 111 46.8
EL10As5g23536 Beta vulgaris HOM05D006092 ORTHO05D007508 3.2e-16 89.0 53 83.0
EL10Ac3g06625 Beta vulgaris HOM05D006092 ORTHO05D007508 1.6e-15 86.7 51 84.3
EL10Ac5g10941 Beta vulgaris HOM05D006092 ORTHO05D007508 1.6e-15 86.7 51 84.3
Cre12.g560950 Chlamydomonas reinhardtii HOM05D006092 ORTHO05D007508 7.0e-11 71.2 108 36.1
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 3.0e-06 55.8 139 30.9
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 8.8e-06 54.3 139 29.5


User provided reference genes

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