Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 5.5e-226 787.3 411 100.0
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 3.2e-189 665.2 413 86.2
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 1.8e-184 649.4 419 83.3
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 2.1e-180 636.0 412 80.3
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 1.3e-179 633.3 416 81.5
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 1.7e-179 632.9 412 79.1
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 5.1e-179 631.3 413 80.1
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 8.7e-179 630.6 414 79.2
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 7.3e-178 627.5 412 79.6
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 9.6e-178 627.1 412 78.4
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 6.2e-177 624.4 413 78.9
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.4e-176 623.2 412 78.6
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 3.1e-176 622.1 414 78.7
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 1.2e-175 620.2 418 78.7
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 1.2e-175 620.2 418 77.3
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 2.0e-175 619.4 412 78.2
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 4.5e-175 618.2 411 78.6
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 1.3e-174 616.7 412 78.2
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 2.4e-173 612.5 415 77.6
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 4.2e-173 611.7 415 77.8
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 7.1e-173 610.9 412 77.7
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 7.1e-173 610.9 412 76.9
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.6e-172 609.8 412 77.4
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 2.1e-172 609.4 410 76.8
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 2.1e-172 609.4 415 77.1
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 2.7e-172 609.0 414 76.8
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.6e-172 608.2 414 76.6
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 6.0e-172 607.8 414 77.8
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 7.9e-172 607.4 414 77.5
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.0e-171 607.1 412 76.7
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.0e-171 607.1 413 76.8
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 1.3e-171 606.7 417 77.7
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 3.0e-171 605.5 412 75.7
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 3.0e-171 605.5 427 74.7
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 3.9e-171 605.1 409 78.0
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.9e-171 605.1 414 75.8
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 5.1e-171 604.7 412 76.0
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 5.1e-171 604.7 412 75.5
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 6.7e-171 604.4 413 77.0
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.1e-170 603.6 413 77.7
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 1.1e-170 603.6 422 75.6
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 4.3e-170 601.7 408 77.5
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 7.4e-170 600.9 414 75.8
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 9.6e-170 600.5 414 76.6
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 9.6e-170 600.5 417 77.7
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 2.8e-169 599.0 420 75.5
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 3.7e-169 598.6 417 76.3
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 6.2e-169 597.8 410 76.8
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 8.1e-169 597.4 414 75.8
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 8.1e-169 597.4 412 76.2
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 1.4e-168 596.7 411 74.5
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 1.8e-168 596.3 429 74.6
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 4.0e-168 595.1 412 75.7
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 5.3e-168 594.7 417 75.3
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 5.3e-168 594.7 417 74.6
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 6.9e-168 594.3 410 76.8
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 1.2e-167 593.6 412 75.2
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 1.2e-167 593.6 450 72.0
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 2.0e-167 592.8 417 75.1
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 2.6e-167 592.4 412 74.8
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.9e-166 589.0 423 74.0
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.8e-166 588.6 412 75.7
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 4.9e-166 588.2 416 74.5
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 4.9e-166 588.2 419 75.2
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 4.9e-166 588.2 423 74.0
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 4.9e-166 588.2 412 74.0
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 4.9e-166 588.2 410 75.6
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 6.5e-166 587.8 416 74.5
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 1.1e-165 587.0 412 73.8
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 1.4e-165 586.6 414 73.4
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 7.1e-165 584.3 422 74.2
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 1.6e-164 583.2 414 73.9
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 3.5e-164 582.0 412 73.1
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 3.5e-164 582.0 413 73.6
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 4.6e-164 581.6 415 74.7
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 7.9e-164 580.9 415 74.2
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 7.9e-164 580.9 443 70.4
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 1.8e-163 579.7 417 73.4
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.8e-163 579.7 443 70.7
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 2.3e-163 579.3 424 73.3
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 3.0e-163 578.9 417 74.6
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 5.1e-163 578.2 424 71.9
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 5.1e-163 578.2 425 73.4
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 6.7e-163 577.8 410 75.9
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 8.7e-163 577.4 417 74.3
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.1e-162 577.0 415 73.5
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 7.4e-162 574.3 420 73.8
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.3e-161 573.5 409 73.6
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 1.3e-161 573.5 419 73.7
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.6e-161 573.2 409 74.1
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 1.1e-160 570.5 416 74.0
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 4.0e-160 568.5 416 73.1
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 5.3e-160 568.2 414 74.4
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 2.0e-159 566.2 416 73.1
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 3.4e-159 565.5 435 71.0
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 1.6e-156 556.6 416 71.6
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 6.1e-156 554.7 361 81.2
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 2.3e-155 552.7 390 73.8
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.4e-151 538.9 361 77.6
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 3.4e-151 538.9 361 77.6
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 3.2e-149 532.3 412 68.9
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 5.5e-149 531.6 411 69.3
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 2.7e-148 529.3 336 80.4
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.5e-146 522.7 480 63.5
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 2.5e-146 522.7 480 63.5
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 2.4e-144 516.2 348 76.7
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 1.4e-141 506.9 346 75.7
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 7.9e-140 501.1 314 80.3
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.1e-136 490.7 359 74.1
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 1.4e-136 490.3 421 65.6
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 1.5e-133 480.3 411 64.0
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 8.2e-129 464.5 417 57.8
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 1.5e-122 443.7 424 54.7
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 1.1e-117 427.6 430 58.8
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 1.1e-112 411.0 271 80.4
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 2.0e-111 406.8 372 57.3
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 6.1e-108 395.2 409 57.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 1.6e-100 370.5 360 59.7
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 3.6e-100 369.4 324 63.9
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 2.3e-99 366.7 336 60.4
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 3.3e-85 319.7 317 53.6
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 1.2e-79 301.2 421 42.3
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 1.6e-79 300.8 425 40.9
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 8.6e-78 295.0 263 62.0
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 2.7e-71 273.5 468 39.1
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 6.6e-70 268.9 471 36.5
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.0e-62 245.0 325 45.8
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.4e-56 223.8 126 84.9
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 3.0e-54 216.9 134 81.3
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 3.3e-53 213.4 315 42.2
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 7.6e-50 202.2 352 37.8
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 4.2e-48 196.4 334 35.6
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 5.7e-45 186.0 105 84.8
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.6e-44 184.5 105 83.8
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 2.6e-42 177.2 103 83.5
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 1.6e-36 157.9 131 65.6
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 3.2e-32 143.7 98 75.5
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 7.4e-29 132.5 117 60.7
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 1.3e-28 131.7 120 64.2
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.7e-23 114.0 58 87.9
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 7.9e-23 112.5 65 86.2
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 3.8e-17 93.6 133 44.4
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 1.5e-16 91.7 73 65.8
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 4.2e-16 90.1 101 53.5
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 1.0e-14 85.5 65 67.7
unitig_899.g15265 Utricularia gibba HOM05D004608 ORTHO05D018951 2.3e-14 84.3 99 49.5
Ca_07476_v3 Cicer arietinum L. HOM05D004608 ORTHO05D018951 5.7e-13 79.7 58 70.7
HanXRQChr05g0144601 Helianthus annuus HOM05D004608 ORTHO05D018951 5.3e-11 73.2 36 97.2
HanXRQChr08g0229721 Helianthus annuus HOM05D004608 ORTHO05D018951 5.3e-11 73.2 36 97.2
HanXRQChr12g0367991 Helianthus annuus HOM05D004608 ORTHO05D018951 5.3e-11 73.2 36 97.2
TAR629G0124 Trochodendron aralioides HOM05D002759 ORTHO05D021026 3.5e-10 70.5 43 74.4
CDE05G1534 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 7.7e-10 69.3 52 63.5
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 1.0e-09 68.9 101 36.6
HanXRQChr16g0512931 Helianthus annuus HOM05D004608 ORTHO05D018951 5.0e-09 66.6 36 94.4
CDE05G2773 Ceratophyllum demersum HOM05D004608 ORTHO05D018951 1.5e-08 65.1 69 55.1
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 1.5e-08 65.1 50 60.0
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 1.0e-06 58.9 120 28.3
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-06 58.5 120 28.3
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-06 58.5 120 28.3
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 1.8e-06 58.2 120 28.3
Lj3C745G8 Lonicera japonica HOM05D000041 ORTHO05D000452 2.3e-06 57.8 96 45.8
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 3.0e-06 57.4 120 28.3
EL10Ac5g11554 Beta vulgaris HOM05D003131 ORTHO05D003761 6.8e-06 56.2 52 57.7


User provided reference genes

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