Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0159911 Helianthus annuus HOM05D004073 ORTHO05D004785 9.2e-187 656.8 336 100.0
HanXRQChr07g0195741 Helianthus annuus HOM05D004073 ORTHO05D004785 2.2e-156 555.8 338 83.4
Lsat_1_v5_gn_5_1501 Lactuca sativa HOM05D004073 ORTHO05D004785 1.9e-152 542.7 336 82.7
Dinv10322 Davidia involucrata HOM05D004073 ORTHO05D004785 8.0e-122 441.0 338 68.0
Cfa002798 Carpinus fangiana HOM05D004073 ORTHO05D004785 4.2e-115 418.7 339 64.6
GSVIVG01014646001 Vitis vinifera HOM05D004073 ORTHO05D004785 1.2e-114 417.2 339 67.3
CiPaw.01G209600 Carya illinoinensis HOM05D004073 ORTHO05D004785 1.4e-113 413.7 339 64.0
Hma1.2p1_0036F.1_g022540 Hydrangea macrophylla HOM05D004073 ORTHO05D004785 9.8e-112 407.5 334 64.1
CiPaw.02G129700 Carya illinoinensis HOM05D004073 ORTHO05D004785 2.2e-111 406.4 339 64.9
QL08p004797 Quercus lobata HOM05D004073 ORTHO05D004785 1.1e-110 404.1 338 63.3
CSS0000121 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 4.1e-110 402.1 336 62.8
Haze_25099 Corylus avellana HOM05D004073 ORTHO05D004785 2.0e-109 399.8 327 64.2
CSS0032183 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 1.0e-108 397.5 334 62.3
Manes.03G140000 Manihot esculenta HOM05D004073 ORTHO05D004785 2.3e-108 396.4 339 62.8
Sopen04g025530 Solanum pennellii HOM05D004073 ORTHO05D004785 6.6e-108 394.8 340 61.8
PGSC0003DMG400010530 Solanum tuberosum HOM05D004073 ORTHO05D004785 6.6e-108 394.8 340 62.1
Peaxi162Scf00529g00814 Petunia axillaris HOM05D004073 ORTHO05D004785 8.6e-108 394.4 339 61.4
Solyc04g056610.3 Solanum lycopersicum HOM05D004073 ORTHO05D004785 1.1e-107 394.0 340 62.1
Nitab4.5_0000276g0150 Nicotiana tabacum HOM05D004073 ORTHO05D004785 9.5e-107 391.0 340 62.1
Rhsim04G0013700 Rhododendron simsii HOM05D004073 ORTHO05D004785 1.6e-106 390.2 329 63.8
Nitab4.5_0000083g0020 Nicotiana tabacum HOM05D004073 ORTHO05D004785 2.1e-106 389.8 340 61.5
Potri.001G366000 Populus trichocarpa HOM05D004073 ORTHO05D004785 2.8e-106 389.4 339 64.0
MSTRG.20573 Avicennia marina HOM05D004073 ORTHO05D004785 4.7e-106 388.7 339 62.5
Sabra16G0239500 Salix brachista HOM05D004073 ORTHO05D004785 8.0e-106 387.9 339 64.6
MBI16_g14388_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 1.4e-105 387.1 334 63.5
Cc02_g24500 Coffea canephora HOM05D004073 ORTHO05D004785 5.2e-105 385.2 339 59.9
Prupe.4G240000 Prunus persica HOM05D004073 ORTHO05D004785 6.8e-105 384.8 338 60.1
RcHm_v2.0_Chr5g0053951 Rosa chinensis HOM05D004073 ORTHO05D004785 8.9e-105 384.4 338 57.7
Duzib213G1048 Durio zibethinus HOM05D004073 ORTHO05D004785 1.3e-103 380.6 339 59.9
TWI39G0963 Tripterygium wilfordii HOM05D004073 ORTHO05D004785 1.3e-103 380.6 338 60.1
ECA240G0169 Erigeron canadensis HOM05D004073 ORTHO05D004785 6.3e-103 378.3 315 65.4
Manes.15G061500 Manihot esculenta HOM05D004073 ORTHO05D004785 8.3e-103 377.9 339 60.2
TAR629G1509 Trochodendron aralioides HOM05D004073 ORTHO05D004785 8.3e-103 377.9 340 61.5
MD11G1201600 Malus domestica HOM05D004073 ORTHO05D004785 1.1e-102 377.5 339 60.5
MD00G1099100 Malus domestica HOM05D004073 ORTHO05D004785 1.4e-102 377.1 339 59.3
TAR629G1249 Trochodendron aralioides HOM05D004073 ORTHO05D004785 1.8e-102 376.7 339 60.8
Ciclev10008892m.g Citrus clementina HOM05D004073 ORTHO05D004785 3.1e-102 375.9 340 59.7
Oeu005967.2 Olea europaea HOM05D004073 ORTHO05D004785 5.4e-102 375.2 392 52.3
Thecc.07G016400 Theobroma cacao HOM05D004073 ORTHO05D004785 1.0e-100 370.9 339 59.3
CAN.G217.4 Capsicum annuum HOM05D004073 ORTHO05D004785 1.3e-100 370.5 341 60.1
Lj3g0026799 Lotus japonicus HOM05D004073 ORTHO05D004785 1.1e-99 367.5 338 58.6
Duzib170G0711 Durio zibethinus HOM05D004073 ORTHO05D004785 2.5e-99 366.3 339 57.8
Gohir.D01G075600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 4.3e-99 365.5 339 58.1
PGSC0003DMG400003290 Solanum tuberosum HOM05D004073 ORTHO05D004785 4.3e-99 365.5 338 58.3
Gohir.A01G090300 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.3e-99 364.8 339 58.4
Gorai.002G098800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.2e-98 364.0 339 57.8
vmacro09656 Vaccinium macrocarpon HOM05D004073 ORTHO05D004785 2.8e-98 362.8 375 55.2
ClCG09G021180 Citrullus lanatus HOM05D004073 ORTHO05D004785 4.7e-98 362.1 340 57.6
Migut.B01283 Erythranthe guttata HOM05D004073 ORTHO05D004785 1.4e-97 360.5 333 58.0
MELO3C024919.2 Cucumis melo HOM05D004073 ORTHO05D004785 6.8e-97 358.2 340 57.4
Gohir.A13G133800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.2e-96 357.5 346 58.4
Sed0023598 Sechium edule HOM05D004073 ORTHO05D004785 1.5e-96 357.1 341 58.4
PGR083G0661 Punica granatum HOM05D004073 ORTHO05D004785 2.6e-96 356.3 338 58.6
Sc03g0011140 Simmondsia chinensis HOM05D004073 ORTHO05D004785 2.6e-96 356.3 339 55.8
CANSAT01G2739 Cannabis sativa HOM05D004073 ORTHO05D004785 3.4e-96 355.9 338 56.8
arahy.Tifrunner.gnm1.ann1.AHDC81 Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-95 354.0 333 57.1
arahy.Tifrunner.gnm1.ann1.9SIV6F Arachis hypogaea HOM05D004073 ORTHO05D004785 4.9e-95 352.1 332 56.3
Sed0026445 Sechium edule HOM05D004073 ORTHO05D004785 8.3e-95 351.3 340 57.9
Gorai.013G153800 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.1e-94 350.9 346 57.5
RcHm_v2.0_Chr5g0077271 Rosa chinensis HOM05D004073 ORTHO05D004785 2.4e-94 349.7 338 54.4
Lj8A177T32 Lonicera japonica HOM05D004073 ORTHO05D004785 4.1e-94 349.0 284 63.4
SGA_v2.0_scaffold119G32745 Striga asiatica HOM05D004073 ORTHO05D004785 5.4e-94 348.6 365 56.2
ECA246G0082 Erigeron canadensis HOM05D004073 ORTHO05D004785 7.0e-94 348.2 318 59.4
Eucgr.F02061 Eucalyptus grandis HOM05D004073 ORTHO05D004785 1.2e-93 347.4 338 58.3
FAN21G2863 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.6e-93 347.1 327 55.0
FvH4_3g29460 Fragaria vesca HOM05D004073 ORTHO05D004785 4.6e-93 345.5 327 55.0
FAN11G2481 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.7e-92 343.6 327 55.0
unitig_26.g10112 Utricularia gibba HOM05D004073 ORTHO05D004785 1.7e-92 343.6 340 55.6
CSS0006286 Camellia sinensis var. sinensis HOM05D004073 ORTHO05D004785 2.3e-92 343.2 285 62.1
Glyma.16G148100 Glycine max HOM05D004073 ORTHO05D004785 3.9e-92 342.4 343 55.4
Gohir.D13G137200 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.1e-91 340.9 340 56.5
Hund23121 Selenicereus undatus HOM05D004073 ORTHO05D004785 1.1e-91 340.9 340 56.2
PSO302G0019 Papaver somniferum HOM05D004073 ORTHO05D004785 1.9e-91 340.1 339 55.8
SalBow6G4871 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.9e-91 340.1 324 57.1
Lj1A888G37 Lonicera japonica HOM05D004073 ORTHO05D004785 4.3e-91 339.0 284 62.3
SalBow3G0415 Salvia bowleyana HOM05D004073 ORTHO05D004785 1.6e-90 337.0 351 53.8
THA.LOC104817703 Tarenaya hassleriana HOM05D004073 ORTHO05D004785 1.6e-90 337.0 345 55.4
DCAR_013227 Daucus carota HOM05D002706 ORTHO05D003253 2.1e-90 336.7 333 56.8
Dinv40845 Davidia involucrata HOM05D004073 ORTHO05D004785 2.8e-90 336.3 248 70.2
Ca_04178_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 4.7e-90 335.5 337 54.9
CDE06G2507 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 6.2e-90 335.1 338 56.8
PSO210G1542 Papaver somniferum HOM05D004073 ORTHO05D004785 8.0e-90 334.7 341 54.8
FAN25G0469 Fragaria x ananassa HOM05D004073 ORTHO05D004785 1.4e-89 334.0 327 54.7
Phvul.004G069300 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 1.4e-89 334.0 344 53.5
Medtr4g086170 Medicago truncatula HOM05D004073 ORTHO05D004785 1.8e-89 333.6 330 55.5
Glyma.02G067000 Glycine max HOM05D004073 ORTHO05D004785 3.1e-89 332.8 333 55.0
VMungo0464G1872 Vigna mungo HOM05D004073 ORTHO05D004785 5.2e-89 332.0 279 61.6
Lalb_Chr15g0083341 Lupinus albus HOM05D004073 ORTHO05D004785 2.0e-88 330.1 346 54.6
Lalb_Chr01g0018421 Lupinus albus HOM05D004073 ORTHO05D004785 1.3e-87 327.4 343 54.8
Hund01907 Selenicereus undatus HOM05D004073 ORTHO05D004785 2.9e-87 326.2 347 53.3
AT5G55610 Arabidopsis thaliana HOM05D004073 ORTHO05D004785 1.4e-86 323.9 330 55.5
CARHR268920 Cardamine hirsuta HOM05D004073 ORTHO05D004785 7.0e-86 321.6 329 55.0
AUR62036423 Chenopodium quinoa HOM05D004073 ORTHO05D004785 7.8e-85 318.2 341 51.3
AUR62036429 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.7e-84 317.0 341 51.0
TPR.G8724 Trifolium pratense HOM05D004073 ORTHO05D004785 1.1e-83 314.3 337 51.9
CDE04G2763 Ceratophyllum demersum HOM05D004073 ORTHO05D004785 2.5e-83 313.2 315 57.5
Medtr6g005540 Medicago truncatula HOM05D004073 ORTHO05D004785 9.5e-83 311.2 344 52.3
AUR62017071 Chenopodium quinoa HOM05D004073 ORTHO05D004785 1.6e-82 310.5 341 49.9
BcaC04g20215 Brassica carinata HOM05D004073 ORTHO05D004785 2.8e-82 309.7 331 52.9
C09p46590 Brassica napus HOM05D004073 ORTHO05D004785 2.8e-82 309.7 331 52.9
BolC9t57510H Brassica oleracea HOM05D004073 ORTHO05D004785 2.8e-82 309.7 331 52.9
Carub.0008s1598 Capsella rubella HOM05D004073 ORTHO05D004785 1.8e-81 307.0 330 53.9
COL.COLO4_09810 Corchorus olitorius HOM05D004073 ORTHO05D004785 5.2e-81 305.4 310 53.2
Thhalv10014039m.g Eutrema salsugineum HOM05D004073 ORTHO05D004785 8.9e-81 304.7 334 52.1
Nn1g07482 Nelumbo nucifera HOM05D004073 ORTHO05D004785 4.4e-80 302.4 248 63.7
EL10Ac4g07603 Beta vulgaris HOM05D004073 ORTHO05D004785 7.5e-80 301.6 347 49.6
Aa31LG3G11560 Aethionema arabicum HOM05D004073 ORTHO05D004785 2.2e-79 300.1 371 48.0
Ca_19377_v3 Cicer arietinum L. HOM05D004073 ORTHO05D004785 2.9e-79 299.7 339 51.3
ATR1126G058 Amborella trichopoda HOM05D004073 ORTHO05D004785 5.4e-78 295.4 341 51.0
A10p12860 Brassica napus HOM05D004073 ORTHO05D004785 7.1e-78 295.0 332 52.1
BraA10t43379Z Brassica rapa HOM05D004073 ORTHO05D004785 7.1e-78 295.0 332 52.1
Sp6g17530 Schrenkiella parvula HOM05D004073 ORTHO05D004785 1.6e-77 293.9 329 51.1
arahy.Tifrunner.gnm1.ann1.F1PCFU Arachis hypogaea HOM05D004073 ORTHO05D004785 2.1e-77 293.5 344 48.8
BcaB08g35921 Brassica carinata HOM05D004073 ORTHO05D004785 6.0e-77 292.0 330 51.5
HPP92_020483 Vanilla planifolia HOM05D004073 ORTHO05D004785 2.5e-75 286.6 321 52.0
Lj6g0025058 Lotus japonicus HOM05D004073 ORTHO05D004785 4.3e-75 285.8 329 50.5
Psat7g190200 Pisum sativum HOM05D004073 ORTHO05D004785 9.5e-75 284.6 326 50.0
AL8G31180 Arabidopsis lyrata HOM05D004073 ORTHO05D004785 1.2e-74 284.3 330 50.3
Aqoxy5G03484 Aquilegia oxysepala HOM05D004073 ORTHO05D004785 1.6e-74 283.9 332 49.7
arahy.Tifrunner.gnm1.ann1.HAYR03 Arachis hypogaea HOM05D004073 ORTHO05D004785 2.1e-74 283.5 330 49.1
Cpa.g.sc12.171 Carica papaya HOM05D004073 ORTHO05D004785 2.1e-74 283.5 343 49.6
Psat1g055880 Pisum sativum HOM05D004073 ORTHO05D004785 3.6e-74 282.7 342 48.8
Lj2g0012663 Lotus japonicus HOM05D004073 ORTHO05D004785 4.7e-74 282.3 330 50.6
Phvul.006G074800 Phaseolus vulgaris HOM05D004073 ORTHO05D004785 4.7e-74 282.3 334 48.8
Medtr4g055190 Medicago truncatula HOM05D004073 ORTHO05D004785 1.8e-73 280.4 338 47.9
Os12g0498800 Oryza sativa ssp. japonica HOM05D004073 ORTHO05D004785 1.8e-73 280.4 331 51.7
C02p15980 Brassica napus HOM05D004073 ORTHO05D004785 4.0e-73 279.3 333 50.2
Ah.06g181300 Amaranthus hybridus HOM05D004073 ORTHO05D004785 8.9e-73 278.1 330 49.4
A02p09590 Brassica napus HOM05D004073 ORTHO05D004785 5.8e-72 275.4 334 50.0
BraA02t06023Z Brassica rapa HOM05D004073 ORTHO05D004785 1.3e-71 274.2 334 50.0
Actinidia35391 Actinidia chinensis HOM05D004073 ORTHO05D004785 1.1e-70 271.2 337 50.1
CsaV3_7G018320 Cucumis sativus L. HOM05D004073 ORTHO05D004785 3.2e-70 269.6 222 62.2
BolC2t07705H Brassica oleracea HOM05D004073 ORTHO05D004785 8.7e-68 261.5 363 45.5
VMungo0540G1827 Vigna mungo HOM05D004073 ORTHO05D004785 2.8e-66 256.5 241 57.3
BcaB05g22217 Brassica carinata HOM05D004073 ORTHO05D004785 2.6e-64 250.0 287 50.9
CANSAT01G1348 Cannabis sativa HOM05D004073 ORTHO05D004785 4.4e-64 249.2 312 49.7
Haze_03265 Corylus avellana HOM05D004073 ORTHO05D004785 1.3e-63 247.7 238 57.6
MD00G1008300 Malus domestica HOM05D004073 ORTHO05D004785 9.6e-59 231.5 264 50.0
Nn1g03214 Nelumbo nucifera HOM05D004073 ORTHO05D004785 5.3e-57 225.7 214 58.4
arahy.Tifrunner.gnm1.ann1.0WG7ZM Arachis hypogaea HOM05D004073 ORTHO05D004785 6.0e-53 212.2 177 60.5
Pp3c17_1290 Physcomitrium patens HOM05D004073 ORTHO05D004785 1.0e-52 211.5 330 43.9
arahy.Tifrunner.gnm1.ann1.W5ZFFA Arachis hypogaea HOM05D004073 ORTHO05D004785 1.3e-52 211.1 157 63.7
Mapoly0030s0146 Marchantia polymorpha HOM05D004073 ORTHO05D004785 6.2e-50 202.2 228 47.8
Pp3c12_2880 Physcomitrium patens HOM05D004073 ORTHO05D004785 6.2e-50 202.2 328 42.4
Atru.chr2.3668 Acer truncatum HOM05D004073 ORTHO05D004785 2.4e-49 200.3 168 63.7
Gohir.D06G153600 Gossypium hirsutum HOM05D004073 ORTHO05D004785 1.2e-45 188.0 206 54.4
Gorai.013G151000 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.6e-45 187.6 206 53.4
Gorai.002G215300 Gossypium raimondii HOM05D004073 ORTHO05D004785 2.7e-45 186.8 206 54.4
Actinidia37162 Actinidia chinensis HOM05D004073 ORTHO05D004785 3.5e-45 186.4 295 41.7
AagrBONN_evm.TU.Sc2ySwM_117.3546 Anthoceros agrestis HOM05D004073 ORTHO05D004785 5.1e-44 182.6 234 44.4
SMO172G0209 Selaginella moellendorffii HOM05D004073 ORTHO05D004785 1.3e-42 177.9 340 37.9
Gorai.010G179600 Gossypium raimondii HOM05D004073 ORTHO05D004785 1.8e-41 174.1 177 57.1
MBI16_g14390_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.9e-37 158.7 142 55.6
TPR.G15593 Trifolium pratense HOM05D004073 ORTHO05D004785 1.6e-34 151.0 129 58.1
Zm00001eb409570 Zea mays HOM05D004073 ORTHO05D004785 3.7e-34 149.8 209 46.4
TAR626G1493 Trochodendron aralioides HOM05D004073 ORTHO05D004785 6.3e-34 149.1 149 55.7
MBI16_g43434_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 3.1e-33 146.7 127 58.3
SEGI_11688 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 7.7e-32 142.1 133 51.9
SEGI_22606 Sequoiadendron giganteum HOM05D004073 ORTHO05D004785 2.7e-29 133.7 205 44.9
TPR.G31066 Trifolium pratense HOM05D004073 ORTHO05D004785 1.0e-28 131.7 140 52.1
Gohir.A04G002800 Gossypium hirsutum HOM05D004073 ORTHO05D004785 7.4e-27 125.6 135 54.1
Thecc.07G016200 Theobroma cacao HOM05D004073 ORTHO05D004785 8.5e-23 112.1 101 56.4
CBR_g33924 Chara braunii HOM05D004073 ORTHO05D004785 4.2e-22 109.8 223 35.9
Medtr4g055205 Medicago truncatula HOM05D004073 ORTHO05D004785 2.8e-18 97.1 107 48.6
Lsat_1_v5_gn_1_76240 Lactuca sativa HOM05D004073 ORTHO05D004785 6.5e-15 85.9 74 64.9
HPP92_020450 Vanilla planifolia HOM05D004073 ORTHO05D004785 1.1e-14 85.1 93 46.2
MBI19_g20151_MAGBIO Magnolia biondii HOM05D004073 ORTHO05D004785 7.2e-14 82.4 308 30.2
PGSC0003DMG401021129 Solanum tuberosum HOM05D004073 ORTHO05D004785 2.7e-13 80.5 144 38.9
GSVIVG01014652001 Vitis vinifera HOM05D004073 ORTHO05D004785 3.9e-12 76.6 62 66.1
PRCOL_00005800 Prasinoderma coloniale HOM05D004073 ORTHO05D004785 1.0e-07 62.0 262 26.3


User provided reference genes

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