Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 0.0e+00 1161.4 583 100.0
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 3.0e-310 1067.8 583 91.3
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 1.8e-307 1058.5 583 90.2
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 2.2e-300 1035.0 584 88.0
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 2.1e-279 965.3 594 80.8
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 3.6e-279 964.5 562 85.1
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 5.2e-278 960.7 590 81.5
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 2.0e-277 958.7 599 80.6
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 1.3e-276 956.1 590 82.0
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 2.8e-276 954.9 545 85.9
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 2.8e-276 954.9 564 83.7
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 3.7e-276 954.5 585 82.1
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 6.3e-276 953.7 584 81.5
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.4e-275 952.6 585 81.2
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 4.1e-275 951.0 555 84.0
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 1.2e-274 949.5 579 81.5
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 1.2e-274 949.5 564 83.0
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 7.8e-274 946.8 587 81.4
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.0e-273 946.4 555 84.0
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 1.0e-273 946.4 576 80.9
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 1.3e-273 946.0 590 80.0
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 1.3e-273 946.0 556 84.2
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.7e-273 945.7 555 83.8
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 2.9e-273 944.9 554 82.9
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 5.0e-273 944.1 554 83.6
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 1.1e-272 943.0 557 83.1
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 1.1e-272 943.0 544 85.3
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 3.3e-272 941.4 589 80.1
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 3.3e-272 941.4 589 80.1
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 9.5e-272 939.9 556 83.1
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 9.5e-272 939.9 589 80.3
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 9.5e-272 939.9 557 82.9
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 1.2e-271 939.5 589 80.0
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 1.6e-271 939.1 577 82.0
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 4.7e-271 937.6 561 82.5
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 8.0e-271 936.8 596 79.4
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 8.0e-271 936.8 556 82.7
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 8.0e-271 936.8 589 79.6
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 1.0e-270 936.4 579 81.2
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.4e-270 936.0 556 82.6
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 2.3e-270 935.3 584 80.7
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 4.0e-270 934.5 548 84.5
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 1.2e-269 932.9 585 79.1
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 1.2e-269 932.9 555 82.3
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 1.5e-269 932.6 579 80.5
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.5e-269 932.6 590 79.3
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 2.0e-269 932.2 544 84.0
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 4.4e-269 931.0 548 84.3
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 5.8e-269 930.6 589 79.5
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 7.5e-269 930.2 573 81.2
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 9.8e-269 929.9 553 82.3
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 1.3e-268 929.5 592 79.4
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 1.7e-268 929.1 558 82.8
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 2.2e-268 928.7 583 79.1
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 2.9e-268 928.3 564 81.7
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 6.4e-268 927.2 550 82.7
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 1.9e-267 925.6 580 79.3
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 1.9e-267 925.6 553 82.3
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 3.2e-267 924.9 594 79.0
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 4.1e-267 924.5 553 82.5
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 1.2e-266 922.9 558 81.5
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 1.6e-266 922.5 557 81.7
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 2.0e-266 922.2 579 80.0
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 2.7e-266 921.8 583 79.2
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 3.5e-266 921.4 550 82.4
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.5e-266 921.4 606 77.2
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 3.5e-266 921.4 608 78.3
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 7.8e-266 920.2 558 81.7
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.3e-265 918.7 594 78.3
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 1.5e-264 916.0 560 81.1
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 2.5e-264 915.2 592 78.0
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 3.3e-264 914.8 566 80.6
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 3.3e-264 914.8 566 80.4
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 1.2e-263 912.9 568 80.5
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 1.6e-263 912.5 566 80.2
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 3.7e-260 901.4 569 78.0
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 6.4e-260 900.6 557 80.4
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 1.4e-259 899.4 591 77.0
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 7.1e-259 897.1 585 77.8
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 6.0e-258 894.0 526 84.0
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 1.9e-256 889.0 628 74.2
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.5e-256 888.6 566 78.1
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 4.3e-256 887.9 558 79.9
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 1.6e-255 885.9 585 76.8
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.1e-255 885.6 620 74.5
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 2.6e-253 878.6 572 76.4
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.3e-252 876.3 530 82.3
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.2e-250 869.8 530 81.7
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.7e-249 865.9 570 75.3
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.8e-247 858.6 584 75.2
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 1.1e-246 856.7 543 77.7
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 1.8e-246 855.9 564 75.4
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 7.6e-245 850.5 634 70.5
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 1.2e-242 843.2 575 76.0
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 1.6e-242 842.8 575 75.8
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 6.6e-241 837.4 562 76.5
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 9.6e-240 833.6 479 84.6
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 9.6e-240 833.6 655 67.9
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 3.4e-237 825.1 479 83.7
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 1.1e-235 820.1 573 73.8
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 3.2e-235 818.5 576 74.0
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 8.7e-233 810.4 551 72.6
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 3.8e-228 795.0 540 72.6
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 2.4e-227 792.3 585 69.9
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 1.3e-225 786.6 541 71.7
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.8e-222 776.2 463 82.5
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 2.0e-221 772.7 554 69.0
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 4.5e-221 771.5 532 71.2
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 2.9e-220 768.8 481 79.4
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 8.4e-212 740.7 524 72.3
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.3e-209 732.6 553 68.9
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 3.3e-192 675.6 549 66.5
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 4.5e-189 665.2 410 84.4
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.1e-187 660.6 405 81.7
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 2.3e-185 652.9 564 58.9
MD11G1214000 Malus domestica HOM05D004902 ORTHO05D006603 5.6e-163 578.6 341 84.8
A01p18110 Brassica napus HOM05D004902 ORTHO05D006603 3.0e-161 572.8 553 57.9
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 3.0e-161 572.8 356 80.6
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 4.9e-159 565.5 510 57.1
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 1.2e-152 544.3 547 53.7
Cpa.g.sc12.277 Carica papaya HOM05D004902 ORTHO05D006603 1.2e-130 471.1 257 90.3
Cre11.g481500 Chlamydomonas reinhardtii HOM05D004902 ORTHO05D006603 8.1e-130 468.4 561 47.6
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 6.3e-90 335.9 189 81.5
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 3.1e-89 333.6 405 52.1
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 1.5e-88 331.3 240 69.2
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 2.6e-67 260.8 210 65.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 4.8e-58 229.9 198 58.6
SEGI_16435 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 3.3e-46 190.7 116 81.9
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 2.9e-42 177.6 112 78.6
RcHm_v2.0_Chr4g0412471 Rosa chinensis HOM05D004902 ORTHO05D006603 3.5e-40 170.6 153 60.1
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.8e-36 158.3 118 61.0
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 4.0e-36 157.1 101 77.2
Aqoxy84s005 Aquilegia oxysepala HOM05D004902 ORTHO05D038539 3.0e-31 141.0 314 32.8
Lsat_1_v5_gn_0_44000 Lactuca sativa HOM05D004902 ORTHO05D038539 1.1e-28 132.5 312 33.7
Glyma.08G319400 Glycine max HOM05D004902 ORTHO05D029739 4.9e-26 123.6 76 84.2
BcaNung03560 Brassica carinata HOM05D004902 ORTHO05D006603 1.5e-19 102.1 84 64.3
FvH4_6g25500 Fragaria vesca HOM05D000003 ORTHO05D000007 1.1e-17 95.9 58 79.3
Lsat_1_v5_gn_3_69341 Lactuca sativa HOM05D004902 ORTHO05D006603 1.1e-14 85.9 126 43.7
Lsat_1_v5_gn_4_11281 Lactuca sativa HOM05D004902 ORTHO05D006603 7.3e-14 83.2 110 46.4
HanXRQChr08g0233831 Helianthus annuus HOM05D004902 ORTHO05D006603 4.7e-13 80.5 40 95.0
Ah.01g018890 Amaranthus hybridus HOM05D004902 ORTHO05D006603 3.1e-12 77.8 119 42.0
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 1.5e-11 75.5 43 76.7
SEGI_35364 Sequoiadendron giganteum HOM05D004902 ORTHO05D025756 6.4e-10 70.1 45 68.9
BcaNung03565 Brassica carinata HOM05D004902 ORTHO05D006603 1.9e-09 68.6 89 48.3
Lsat_1_v5_gn_5_36061 Lactuca sativa HOM05D004902 ORTHO05D025756 2.4e-09 68.2 44 70.5
RcHm_v2.0_Chr5g0040621 Rosa chinensis HOM05D004902 ORTHO05D006603 6.0e-08 63.5 37 83.8
TWI38G0888 Tripterygium wilfordii HOM05D004902 ORTHO05D029739 6.0e-08 63.5 52 69.2
Lsat_1_v5_gn_2_18401 Lactuca sativa HOM05D004902 ORTHO05D233888 1.7e-07 62.0 112 39.3
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 1.5e-06 58.9 35 71.4
Lsat_1_v5_gn_0_720 Lactuca sativa HOM05D004902 ORTHO05D029739 5.6e-06 57.0 55 58.2


User provided reference genes

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