Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0158781 Helianthus annuus HOM05D002504 ORTHO05D222936 4.4e-32 140.6 66 100.0
HanXRQChr13g0402801 Helianthus annuus HOM05D002504 ORTHO05D220533 2.7e-29 131.3 61 100.0
HanXRQChr13g0403301 Helianthus annuus HOM05D000107 ORTHO05D000062 2.7e-29 131.3 61 100.0
MELO3C002203.2 Cucumis melo HOM05D002504 ORTHO05D007332 3.4e-16 87.8 60 70.0
CsaV3_1G007880 Cucumis sativus L. HOM05D002504 ORTHO05D007332 4.4e-16 87.4 60 68.3
QL10p015763 Quercus lobata HOM05D002504 ORTHO05D007332 5.7e-16 87.0 60 66.7
Cfa018980 Carpinus fangiana HOM05D002504 ORTHO05D007332 7.5e-16 86.7 60 66.7
Haze_07366 Corylus avellana HOM05D002504 ORTHO05D007332 7.5e-16 86.7 60 66.7
ClCG01G014440 Citrullus lanatus HOM05D002504 ORTHO05D007332 9.8e-16 86.3 60 66.7
CiPaw.11G039500 Carya illinoinensis HOM05D002504 ORTHO05D007332 1.3e-15 85.9 60 65.0
Ca_21843_v3 Cicer arietinum L. HOM05D002504 ORTHO05D007332 1.3e-15 85.9 60 68.3
ECA232G1281 Erigeron canadensis HOM05D002504 ORTHO05D007332 1.3e-15 85.9 60 68.3
HanXRQChr09g0271081 Helianthus annuus HOM05D002504 ORTHO05D007332 1.3e-15 85.9 60 68.3
Lsat_1_v5_gn_4_107620 Lactuca sativa HOM05D002504 ORTHO05D007332 1.3e-15 85.9 60 68.3
Sed0027525 Sechium edule HOM05D002504 ORTHO05D007332 1.3e-15 85.9 60 66.7
Atru.chr9.2306 Acer truncatum HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
Cc04_g15410 Coffea canephora HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
DCAR_001954 Daucus carota HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
Glyma.17G097800 Glycine max HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
Lj4g0024401 Lotus japonicus HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
Lalb_Chr07g0177901 Lupinus albus HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
Lalb_Chr13g0303401 Lupinus albus HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
Manes.14G075700 Manihot esculenta HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
Medtr4g107940 Medicago truncatula HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
Phvul.003G192100 Phaseolus vulgaris HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
Psat4g053760 Pisum sativum HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
Rhsim12G0158400 Rhododendron simsii HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
TPR.G28161 Trifolium pratense HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
TPR.G38417 Trifolium pratense HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
vmacro16565 Vaccinium macrocarpon HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
VMungo1215G3404 Vigna mungo HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
GSVIVG01008047001 Vitis vinifera HOM05D002504 ORTHO05D007332 1.7e-15 85.5 60 66.7
Actinidia37649 Actinidia chinensis HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 65.0
arahy.Tifrunner.gnm1.ann1.0II3I9 Arachis hypogaea HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 66.7
arahy.Tifrunner.gnm1.ann1.77YH77 Arachis hypogaea HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 66.7
CANSAT01G1674 Cannabis sativa HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 66.7
CAN.G628.36 Capsicum annuum HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 66.7
Dinv19925 Davidia involucrata HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 65.0
Glyma.05G029100 Glycine max HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 66.7
Glyma.05G029200 Glycine max HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 66.7
Lj9C460G15 Lonicera japonica HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 65.0
MD06G1189000 Malus domestica HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 66.7
MD14G1196000 Malus domestica HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 66.7
Prupe.5G187700 Prunus persica HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 66.7
PGR083G0441 Punica granatum HOM05D002504 ORTHO05D007332 2.2e-15 85.1 60 65.0
MSTRG.11396 Avicennia marina HOM05D002504 ORTHO05D007332 2.8e-15 84.7 60 66.7
EL10Ac5g10953 Beta vulgaris HOM05D002504 ORTHO05D007332 2.8e-15 84.7 60 65.0
Lsat_1_v5_gn_1_10981 Lactuca sativa HOM05D002504 ORTHO05D007332 2.8e-15 84.7 60 66.7
MBI04_g05752_MAGBIO Magnolia biondii HOM05D002504 ORTHO05D007332 2.8e-15 84.7 60 68.3
Potri.015G064200 Populus trichocarpa HOM05D002504 ORTHO05D007332 2.8e-15 84.7 60 65.0
TWI15G0064 Tripterygium wilfordii HOM05D002504 ORTHO05D007332 2.8e-15 84.7 60 66.7
Dinv38674 Davidia involucrata HOM05D002504 ORTHO05D007332 3.7e-15 84.3 60 63.3
ECA236G0190 Erigeron canadensis HOM05D002504 ORTHO05D007332 3.7e-15 84.3 60 66.7
HanXRQChr02g0045291 Helianthus annuus HOM05D002504 ORTHO05D007332 3.7e-15 84.3 60 66.7
Hma1.2p1_0002F.1_g003110 Hydrangea macrophylla HOM05D002504 ORTHO05D007332 3.7e-15 84.3 60 65.0
Hma1.2p1_0002F.1_g003120 Hydrangea macrophylla HOM05D002504 ORTHO05D007332 3.7e-15 84.3 60 65.0
PSO017G0663 Papaver somniferum HOM05D002504 ORTHO05D007332 3.7e-15 84.3 60 63.3
PSO478G0883 Papaver somniferum HOM05D002504 ORTHO05D007332 3.7e-15 84.3 60 63.3
unitig_0.g2534 Utricularia gibba HOM05D002504 ORTHO05D007332 3.7e-15 84.3 60 65.0
CSS0027489 Camellia sinensis var. sinensis HOM05D002504 ORTHO05D007332 4.9e-15 84.0 60 65.0
AUR62008369 Chenopodium quinoa HOM05D002504 ORTHO05D007332 4.9e-15 84.0 60 63.3
AUR62021730 Chenopodium quinoa HOM05D002504 ORTHO05D007332 4.9e-15 84.0 60 63.3
Eucgr.B00436 Eucalyptus grandis HOM05D002504 ORTHO05D007332 4.9e-15 84.0 60 65.0
Hund09366 Selenicereus undatus HOM05D002504 ORTHO05D007332 4.9e-15 84.0 60 65.0
Cpa.g.sc17.219 Carica papaya HOM05D002504 ORTHO05D007332 6.3e-15 83.6 60 65.0
Ciclev10019562m.g Citrus clementina HOM05D002504 ORTHO05D007332 6.3e-15 83.6 60 63.3
Duzib205G1248 Durio zibethinus HOM05D002504 ORTHO05D007332 6.3e-15 83.6 60 63.3
Gohir.A03G065300 Gossypium hirsutum HOM05D002504 ORTHO05D007332 6.3e-15 83.6 60 63.3
Gohir.D03G091600 Gossypium hirsutum HOM05D002504 ORTHO05D007332 6.3e-15 83.6 60 63.3
Gorai.003G095000 Gossypium raimondii HOM05D002504 ORTHO05D007332 6.3e-15 83.6 60 63.3
Rhsim08G0159000 Rhododendron simsii HOM05D002504 ORTHO05D007332 6.3e-15 83.6 60 65.0
SalBow5G0936 Salvia bowleyana HOM05D002504 ORTHO05D007332 6.3e-15 83.6 60 65.0
SalBow5G1952 Salvia bowleyana HOM05D002504 ORTHO05D007332 6.3e-15 83.6 60 65.0
Thecc.03G080800 Theobroma cacao HOM05D002504 ORTHO05D007332 6.3e-15 83.6 60 61.7
vmacro17514 Vaccinium macrocarpon HOM05D002504 ORTHO05D007332 6.3e-15 83.6 60 65.0
Aqoxy3G03293 Aquilegia oxysepala HOM05D002504 ORTHO05D007332 8.3e-15 83.2 60 65.0
Solyc06g071000.3 Solanum lycopersicum HOM05D002504 ORTHO05D007332 1.1e-14 82.8 60 65.0
Sopen06g027300 Solanum pennellii HOM05D002504 ORTHO05D007332 1.1e-14 82.8 60 65.0
PGSC0003DMG400033072 Solanum tuberosum HOM05D002504 ORTHO05D007332 1.1e-14 82.8 60 65.0
Actinidia04916 Actinidia chinensis HOM05D002504 ORTHO05D007332 1.4e-14 82.4 59 64.4
Nitab4.5_0000269g0160 Nicotiana tabacum HOM05D002504 ORTHO05D007332 1.4e-14 82.4 60 63.3
Nitab4.5_0007394g0020 Nicotiana tabacum HOM05D002504 ORTHO05D007332 1.4e-14 82.4 60 63.3
Peaxi162Scf00013g00037 Petunia axillaris HOM05D002504 ORTHO05D007332 1.4e-14 82.4 60 63.3
SGA_v2.0_scaffold25G10908 Striga asiatica HOM05D002504 ORTHO05D007332 1.4e-14 82.4 60 63.3
SGA_v2.0_scaffold6G03145 Striga asiatica HOM05D002504 ORTHO05D007332 1.4e-14 82.4 60 63.3
Aa31LG11G1110 Aethionema arabicum HOM05D002504 ORTHO05D007332 1.8e-14 82.0 60 63.3
TAR622G0396 Trochodendron aralioides HOM05D002504 ORTHO05D007332 1.8e-14 82.0 60 65.0
BcaB02g09655 Brassica carinata HOM05D002504 ORTHO05D007332 2.4e-14 81.6 60 63.3
BcaC01g02484 Brassica carinata HOM05D002504 ORTHO05D007332 2.4e-14 81.6 60 63.3
BcaC03g18163 Brassica carinata HOM05D002504 ORTHO05D007332 2.4e-14 81.6 60 63.3
A06p29230 Brassica napus HOM05D002504 ORTHO05D007332 2.4e-14 81.6 60 63.3
C03p64300 Brassica napus HOM05D002504 ORTHO05D007332 2.4e-14 81.6 60 63.3
BolC3t18684H Brassica oleracea HOM05D002504 ORTHO05D007332 2.4e-14 81.6 60 63.3
BraA06t25879Z Brassica rapa HOM05D002504 ORTHO05D007332 2.4e-14 81.6 60 63.3
Thhalv10003935m.g Eutrema salsugineum HOM05D002504 ORTHO05D007332 2.4e-14 81.6 60 63.3
Sp2g25700 Schrenkiella parvula HOM05D002504 ORTHO05D007332 2.4e-14 81.6 60 63.3
ATR1120G185 Amborella trichopoda HOM05D002504 ORTHO05D007332 3.1e-14 81.3 56 66.1
AL8G39420 Arabidopsis lyrata HOM05D002504 ORTHO05D007332 3.1e-14 81.3 60 61.7
AT5G62530 Arabidopsis thaliana HOM05D002504 ORTHO05D007332 3.1e-14 81.3 60 61.7
Carub.0008s2320 Capsella rubella HOM05D002504 ORTHO05D007332 3.1e-14 81.3 60 61.7
FvH4_5g15350 Fragaria vesca HOM05D002504 ORTHO05D007332 3.1e-14 81.3 60 63.3
FAN13G2486 Fragaria x ananassa HOM05D002504 ORTHO05D007332 3.1e-14 81.3 60 63.3
FAN18G3736 Fragaria x ananassa HOM05D002504 ORTHO05D007332 3.1e-14 81.3 60 63.3
Sc12g0006220 Simmondsia chinensis HOM05D002504 ORTHO05D007332 3.1e-14 81.3 60 63.3
THA.LOC104821429 Tarenaya hassleriana HOM05D002504 ORTHO05D007332 3.1e-14 81.3 60 61.7
Sabra15G0090000 Salix brachista HOM05D002504 ORTHO05D007332 4.1e-14 80.9 60 63.3
RcHm_v2.0_Chr7g0180721 Rosa chinensis HOM05D002504 ORTHO05D007332 5.4e-14 80.5 60 61.7
CARHR276310 Cardamine hirsuta HOM05D002504 ORTHO05D007332 7.0e-14 80.1 60 60.0
CDE05G2125 Ceratophyllum demersum HOM05D002504 ORTHO05D007332 7.0e-14 80.1 60 60.0
FAN04G0870 Fragaria x ananassa HOM05D002504 ORTHO05D007332 7.0e-14 80.1 60 61.7
HPP92_007639 Vanilla planifolia HOM05D002504 ORTHO05D007332 9.2e-14 79.7 60 63.3
Zm00001eb294160 Zea mays HOM05D002504 ORTHO05D007332 9.2e-14 79.7 60 61.7
Os05g0536400 Oryza sativa ssp. japonica HOM05D002504 ORTHO05D007332 1.2e-13 79.3 60 61.7
BcaC03g18158 Brassica carinata HOM05D002504 ORTHO05D007332 2.0e-13 78.6 60 60.0
SHI03939 Sapria himalayana HOM05D000105 ORTHO05D000023 2.0e-13 78.6 59 59.3
SEGI_08975 Sequoiadendron giganteum HOM05D002504 ORTHO05D007332 2.7e-13 78.2 60 61.7
Mapoly0053s0041 Marchantia polymorpha HOM05D002504 ORTHO05D007332 3.5e-13 77.8 60 61.7
Migut.M00130 Erythranthe guttata HOM05D002504 ORTHO05D007332 5.9e-13 77.0 60 58.3
SMO118G0249 Selaginella moellendorffii HOM05D002504 ORTHO05D007332 1.3e-12 75.9 60 56.7
AagrBONN_evm.TU.Sc2ySwM_228.5522 Anthoceros agrestis HOM05D002504 ORTHO05D007332 2.3e-12 75.1 60 56.7
Cre12.g520350 Chlamydomonas reinhardtii HOM05D002504 ORTHO05D007332 2.3e-12 75.1 61 60.7
C02p62290 Brassica napus HOM05D002504 ORTHO05D007332 3.9e-12 74.3 59 57.6
BolC2t12286H Brassica oleracea HOM05D002504 ORTHO05D007332 3.9e-12 74.3 59 57.6
Pp3c5_4940 Physcomitrium patens HOM05D002504 ORTHO05D007332 6.6e-12 73.6 60 56.7
BcaB07g29846 Brassica carinata HOM05D002504 ORTHO05D007332 2.5e-11 71.6 60 56.7


User provided reference genes

Program Settings