Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 1.2e-146 523.5 332 100.0
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 1.0e-105 387.5 344 67.7
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 4.5e-101 372.1 340 68.2
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 1.4e-91 340.5 331 72.2
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 3.5e-69 266.2 360 50.6
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 1.5e-67 260.8 344 55.8
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 2.5e-67 260.0 336 54.5
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 3.3e-67 259.6 335 53.4
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 7.2e-67 258.5 343 60.1
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 8.0e-66 255.0 345 51.0
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 4.0e-65 252.7 333 54.1
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 8.9e-65 251.5 346 51.7
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 7.5e-64 248.4 310 50.6
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 9.8e-64 248.1 335 54.6
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 3.7e-63 246.1 343 51.3
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 6.3e-63 245.4 330 50.6
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 3.1e-62 243.0 333 48.9
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 1.2e-61 241.1 341 53.4
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 1.6e-61 240.7 344 50.9
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 2.7e-61 240.0 373 50.1
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 3.5e-61 239.6 331 49.5
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 3.5e-61 239.6 332 49.4
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 2.3e-60 236.9 335 50.7
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 8.6e-60 235.0 328 56.1
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.1e-59 234.6 333 52.3
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 1.9e-59 233.8 283 56.2
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 3.3e-59 233.0 338 49.4
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 4.3e-59 232.6 328 43.9
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 5.6e-59 232.3 331 52.9
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 7.3e-59 231.9 340 51.2
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.2e-58 231.1 333 48.9
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 1.6e-58 230.7 335 49.6
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 4.0e-57 226.1 344 48.0
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 4.0e-57 226.1 336 48.5
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 4.0e-57 226.1 323 51.4
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 1.2e-56 224.6 328 46.0
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 1.5e-56 224.2 336 48.2
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.0e-56 223.8 327 49.5
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 7.5e-56 221.9 327 49.2
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 7.5e-56 221.9 336 48.2
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 7.5e-56 221.9 327 47.4
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 1.7e-55 220.7 338 47.9
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 2.2e-55 220.3 330 47.0
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 2.9e-55 219.9 340 47.4
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 3.7e-55 219.5 304 49.7
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 3.7e-55 219.5 343 44.3
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.9e-55 219.2 334 47.9
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 6.4e-55 218.8 326 48.8
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 1.1e-54 218.0 301 49.2
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.4e-54 217.6 324 53.7
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 2.4e-54 216.9 335 41.8
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 7.0e-54 215.3 323 48.3
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 7.0e-54 215.3 276 52.2
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 7.0e-54 215.3 297 46.8
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 7.0e-54 215.3 314 43.6
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 9.2e-54 214.9 333 43.8
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.2e-53 214.5 316 47.8
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 2.7e-53 213.4 327 48.0
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 6.0e-53 212.2 336 46.7
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 7.8e-53 211.8 305 43.6
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 2.3e-52 210.3 342 46.8
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 2.3e-52 210.3 338 46.2
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 2.3e-52 210.3 294 45.6
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 8.6e-52 208.4 346 51.2
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 1.1e-51 208.0 303 43.6
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 2.5e-51 206.8 326 48.8
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 2.5e-51 206.8 297 50.8
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 7.3e-51 205.3 341 48.1
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 7.3e-51 205.3 348 42.5
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 9.5e-51 204.9 331 40.5
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 2.8e-50 203.4 295 46.1
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 8.0e-50 201.8 294 52.0
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 1.1e-49 201.4 331 39.9
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 3.1e-49 199.9 337 46.3
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 3.1e-49 199.9 302 47.4
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 4.0e-49 199.5 303 56.1
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 6.8e-49 198.7 345 44.3
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 1.5e-48 197.6 348 42.0
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 3.7e-47 193.0 284 47.5
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 6.4e-47 192.2 287 47.7
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 5.4e-46 189.1 418 38.0
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 5.4e-46 189.1 311 44.1
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 6.0e-45 185.7 301 40.5
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 6.0e-45 185.7 336 44.6
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 6.0e-45 185.7 339 38.6
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 7.8e-45 185.3 338 42.6
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 2.3e-44 183.7 344 41.9
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.1e-43 181.4 334 38.3
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.1e-43 181.4 339 40.1
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 1.9e-43 180.6 344 36.3
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 3.3e-43 179.9 260 48.5
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 4.3e-43 179.5 322 49.1
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.2e-42 177.9 342 36.5
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.2e-42 177.9 342 36.5
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 1.6e-42 177.6 338 43.2
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 4.7e-42 176.0 290 40.7
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 4.7e-42 176.0 256 50.4
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 5.2e-41 172.6 501 33.5
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 1.5e-40 171.0 257 56.0
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 1.5e-40 171.0 297 37.7
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 4.9e-39 166.0 234 47.4
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.9e-38 164.1 335 41.8
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 2.1e-37 160.6 280 47.1
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.0e-36 158.3 343 37.0
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 1.3e-36 157.9 329 39.8
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.3e-36 157.1 249 47.4
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 2.5e-35 153.7 335 39.4
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 5.6e-35 152.5 358 39.4
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 5.6e-35 152.5 238 44.1
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 7.3e-35 152.1 350 37.1
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 9.5e-35 151.8 342 41.8
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 2.1e-34 150.6 337 38.9
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 2.1e-34 150.6 334 32.9
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 6.2e-34 149.1 342 33.0
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 1.1e-33 148.3 344 33.1
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 2.0e-32 144.1 330 35.8
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 1.7e-31 141.0 305 34.1
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 1.7e-31 141.0 290 34.8
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 2.7e-29 133.7 234 47.0
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 8.7e-28 128.6 296 32.4
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.1e-27 128.3 303 31.4
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 8.1e-26 122.1 288 31.9
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 1.1e-25 121.7 330 35.2
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 7.6e-24 115.5 330 32.7
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.8e-23 113.2 119 58.0
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 3.8e-23 113.2 285 31.6
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 4.6e-21 106.3 201 38.3
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.4e-17 94.7 95 54.7
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 5.3e-17 92.8 191 33.0
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.5e-16 91.3 290 28.3
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 3.4e-16 90.1 105 50.5
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 7.6e-16 89.0 192 34.9
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 6.4e-15 85.9 252 43.3
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 7.1e-14 82.4 106 50.0
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.2e-13 81.6 100 49.0
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.6e-13 81.3 265 29.1
TPR.G28909 Trifolium pratense HOM05D005253 ORTHO05D006058 6.7e-12 75.9 93 50.5
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 8.7e-12 75.5 192 33.9
Gohir.D13G101706 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.1e-10 70.9 68 60.3
Duzib132G0740 Durio zibethinus HOM05D005253 ORTHO05D006058 4.0e-09 66.6 71 50.7
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.2e-08 65.1 89 43.8
CsaV3_2G035990 Cucumis sativus L. HOM05D000092 ORTHO05D020529 1.9e-06 57.8 45 57.8


User provided reference genes

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