Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 3.8e-44 181.0 86 100.0
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 2.7e-21 105.1 82 53.7
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 6.8e-17 90.5 56 62.5
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.2e-15 85.5 55 60.0
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 3.7e-15 84.7 81 48.1
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 6.3e-15 84.0 81 45.7
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 6.3e-15 84.0 82 43.9
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 1.4e-14 82.8 81 44.4
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 1.4e-14 82.8 82 42.7
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.1e-14 81.6 74 48.6
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 5.4e-14 80.9 82 45.1
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 7.0e-14 80.5 85 42.4
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 9.1e-14 80.1 81 45.7
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-13 79.7 54 55.6
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-13 79.7 54 55.6
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 2.0e-13 79.0 80 42.5
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 2.0e-13 79.0 81 45.7
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 2.7e-13 78.6 78 44.9
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 3.5e-13 78.2 54 61.1
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 3.5e-13 78.2 54 57.4
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.5e-13 77.8 53 56.6
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 5.9e-13 77.4 78 43.6
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.9e-13 77.4 76 46.1
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 5.9e-13 77.4 76 46.1
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 7.7e-13 77.0 78 43.6
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 7.7e-13 77.0 76 46.1
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 7.7e-13 77.0 81 40.7
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.0e-12 76.6 55 56.4
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.0e-12 76.6 64 48.4
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 1.3e-12 76.3 82 43.9
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 1.7e-12 75.9 51 58.8
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.7e-12 75.9 85 41.2
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 1.7e-12 75.9 82 41.5
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.3e-12 75.5 78 42.3
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.3e-12 75.5 78 42.3
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.3e-12 75.5 76 43.4
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 2.3e-12 75.5 78 43.6
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.9e-12 75.1 61 49.2
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.9e-12 75.1 52 51.9
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 6.6e-12 73.9 78 41.0
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 8.6e-12 73.6 83 41.0
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 8.6e-12 73.6 81 44.4
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 1.1e-11 73.2 79 44.3
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 1.1e-11 73.2 79 44.3
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.1e-11 73.2 51 52.9
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 1.1e-11 73.2 51 52.9
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.5e-11 72.8 79 48.1
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 1.5e-11 72.8 87 44.8
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.5e-11 72.8 56 57.1
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.5e-11 72.8 56 57.1
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 1.5e-11 72.8 51 49.0
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.9e-11 72.4 80 47.5
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.9e-11 72.4 83 43.4
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 1.9e-11 72.4 86 40.7
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.9e-11 72.4 78 42.3
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.3e-11 71.6 79 48.1
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 3.3e-11 71.6 84 41.7
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 4.2e-11 71.2 54 51.9
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 5.5e-11 70.9 85 47.1
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.5e-11 70.9 56 55.4
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 7.2e-11 70.5 54 48.1
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 7.2e-11 70.5 80 41.2
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 9.5e-11 70.1 73 42.5
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 1.2e-10 69.7 61 45.9
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 2.1e-10 68.9 58 51.7
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 2.8e-10 68.6 93 36.6
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.6e-10 68.2 75 41.3
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 3.6e-10 68.2 75 41.3
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 4.7e-10 67.8 88 39.8
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 6.1e-10 67.4 55 52.7
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 1.4e-09 66.2 84 40.5
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.8e-09 65.9 74 40.5
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.8e-09 65.9 46 56.5
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.8e-09 65.9 55 45.5
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 3.0e-09 65.1 36 63.9
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 3.0e-09 65.1 40 67.5
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 4.0e-09 64.7 36 63.9
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 5.2e-09 64.3 40 60.0
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 1.2e-08 63.2 83 38.6
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.2e-08 63.2 35 60.0
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.0e-08 62.4 78 41.0
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 2.0e-08 62.4 40 57.5
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 2.0e-08 62.4 40 57.5
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.6e-08 62.0 80 37.5
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 2.6e-08 62.0 40 55.0
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 3.4e-08 61.6 52 46.2
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 4.4e-08 61.2 54 48.1
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 5.7e-08 60.8 47 51.1
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 9.8e-08 60.1 37 56.8
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 9.8e-08 60.1 35 57.1
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.3e-07 59.7 36 55.6
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 1.7e-07 59.3 38 60.5
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 2.2e-07 58.9 82 36.6
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 2.2e-07 58.9 54 50.0
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 6.3e-07 57.4 87 34.5
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 6.3e-07 57.4 79 38.0
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 8.3e-07 57.0 78 37.2
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 1.1e-06 56.6 37 54.1
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 1.4e-06 56.2 81 39.5
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 1.8e-06 55.8 87 35.6
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.4e-06 55.5 51 45.1
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 2.4e-06 55.5 44 47.7
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 2.4e-06 55.5 77 39.0
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 3.1e-06 55.1 86 32.6
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 3.1e-06 55.1 45 46.7
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 3.1e-06 55.1 75 30.7
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 9.2e-06 53.5 37 48.6


User provided reference genes

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