Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0156561 Helianthus annuus HOM05D004279 ORTHO05D004979 5.1e-165 584.3 295 100.0
Lsat_1_v5_gn_5_7280 Lactuca sativa HOM05D004279 ORTHO05D004979 5.1e-157 557.8 295 93.6
ECA236G3281 Erigeron canadensis HOM05D004279 ORTHO05D004979 1.4e-143 513.1 290 86.9
Lj1A851T62 Lonicera japonica HOM05D004279 ORTHO05D004979 3.0e-141 505.4 295 86.8
HanXRQChr13g0386401 Helianthus annuus HOM05D004279 ORTHO05D004979 2.0e-137 492.7 293 83.3
Dinv22371 Davidia involucrata HOM05D004279 ORTHO05D004979 1.2e-134 483.4 295 84.1
CSS0001500 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.1e-134 482.6 295 82.7
Rhsim04G0018800 Rhododendron simsii HOM05D004279 ORTHO05D004979 1.3e-131 473.4 296 82.1
Hma1.2p1_1274F.1_g271930 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 1.7e-131 473.0 290 82.1
Solyc07g063460.3 Solanum lycopersicum HOM05D004279 ORTHO05D004979 1.6e-129 466.5 296 79.4
Sopen07g031640 Solanum pennellii HOM05D004279 ORTHO05D004979 1.6e-129 466.5 296 79.4
PGSC0003DMG400019253 Solanum tuberosum HOM05D004279 ORTHO05D004979 1.6e-129 466.5 296 80.1
Actinidia35269 Actinidia chinensis HOM05D004279 ORTHO05D004979 6.5e-128 461.1 296 78.7
Peaxi162Scf01111g00012 Petunia axillaris HOM05D004279 ORTHO05D004979 8.5e-128 460.7 296 79.7
Nn1g06689 Nelumbo nucifera HOM05D004279 ORTHO05D004979 4.2e-127 458.4 283 82.3
TAR626G0357 Trochodendron aralioides HOM05D004279 ORTHO05D004979 7.2e-127 457.6 295 78.3
Cc05_g12550 Coffea canephora HOM05D004279 ORTHO05D004979 9.4e-127 457.2 301 77.7
DCAR_009977 Daucus carota HOM05D004279 ORTHO05D004979 9.4e-127 457.2 295 78.6
Aqoxy4G01310 Aquilegia oxysepala HOM05D004279 ORTHO05D004979 1.6e-126 456.4 297 78.1
Lsat_1_v5_gn_7_105700 Lactuca sativa HOM05D004279 ORTHO05D004979 1.6e-126 456.4 296 79.1
Nitab4.5_0000815g0050 Nicotiana tabacum HOM05D004279 ORTHO05D004979 1.6e-126 456.4 296 79.1
Dinv08329 Davidia involucrata HOM05D004279 ORTHO05D004979 8.0e-126 454.1 278 83.8
Nitab4.5_0009177g0010 Nicotiana tabacum HOM05D004279 ORTHO05D004979 8.0e-126 454.1 296 79.1
CSS0025917 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 1.4e-125 453.4 291 80.1
Hma1.2p1_1143F.1_g261130 Hydrangea macrophylla HOM05D004279 ORTHO05D004979 4.0e-125 451.8 290 78.6
Nn1g03957 Nelumbo nucifera HOM05D004279 ORTHO05D004979 5.2e-125 451.4 295 78.6
PSO210G3340 Papaver somniferum HOM05D004279 ORTHO05D004979 6.3e-123 444.5 297 76.8
Migut.H01911 Erythranthe guttata HOM05D004279 ORTHO05D004979 5.4e-122 441.4 304 75.0
PSO832G3402 Papaver somniferum HOM05D004279 ORTHO05D004979 7.0e-122 441.0 297 76.1
MSTRG.12925 Avicennia marina HOM05D004279 ORTHO05D004979 1.3e-120 436.8 303 74.6
Oeu055672.1 Olea europaea HOM05D004279 ORTHO05D004979 1.3e-120 436.8 302 74.8
TWI39G0076 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 6.6e-120 434.5 297 76.8
Actinidia18754 Actinidia chinensis HOM05D002936 ORTHO05D004979 8.6e-120 434.1 284 78.5
TWI38G1973 Tripterygium wilfordii HOM05D004279 ORTHO05D004979 1.5e-119 433.3 298 76.2
Gohir.D01G054400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.5e-119 432.6 292 76.7
Gorai.002G074300 Gossypium raimondii HOM05D004279 ORTHO05D004979 2.5e-119 432.6 292 76.7
DCAR_022481 Daucus carota HOM05D004279 ORTHO05D004979 4.2e-119 431.8 297 75.1
MSTRG.14375 Avicennia marina HOM05D004279 ORTHO05D004979 5.5e-119 431.4 303 73.9
COL.COLO4_09461 Corchorus olitorius HOM05D004279 ORTHO05D004979 9.5e-119 430.6 292 76.4
Duzib213G0014 Durio zibethinus HOM05D004279 ORTHO05D004979 1.6e-118 429.9 292 76.0
SalBow7G1458 Salvia bowleyana HOM05D004279 ORTHO05D004979 1.6e-118 429.9 293 76.1
Oeu008023.1 Olea europaea HOM05D004279 ORTHO05D004979 2.1e-118 429.5 302 72.5
Manes.03G114800 Manihot esculenta HOM05D004279 ORTHO05D004979 3.6e-118 428.7 297 76.4
Cpa.g.sc80.101 Carica papaya HOM05D004279 ORTHO05D004979 1.0e-117 427.2 292 76.4
Gohir.D05G360400 Gossypium hirsutum HOM05D004279 ORTHO05D004979 1.0e-117 427.2 292 74.7
Gorai.009G432300 Gossypium raimondii HOM05D004279 ORTHO05D004979 1.8e-117 426.4 292 74.7
Gohir.A01G067200 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.3e-117 426.0 292 76.0
Ciclev10009067m.g Citrus clementina HOM05D004279 ORTHO05D004979 3.0e-117 425.6 287 76.7
Thecc.07G074500 Theobroma cacao HOM05D004279 ORTHO05D004979 3.0e-117 425.6 292 75.7
CANSAT11G2237 Cannabis sativa HOM05D004279 ORTHO05D004979 5.2e-117 424.9 294 75.2
Duzib268G0928 Durio zibethinus HOM05D004279 ORTHO05D004979 1.5e-116 423.3 292 74.7
CSS0045555 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 2.0e-116 422.9 291 76.6
Gohir.A04G027700 Gossypium hirsutum HOM05D004279 ORTHO05D004979 2.0e-116 422.9 292 73.6
CARHR090590 Cardamine hirsuta HOM05D004279 ORTHO05D004979 4.4e-116 421.8 292 76.0
Manes.15G084500 Manihot esculenta HOM05D004279 ORTHO05D004979 4.4e-116 421.8 297 75.4
Lj3g0025503 Lotus japonicus HOM05D004279 ORTHO05D004979 5.7e-116 421.4 296 73.6
Thhalv10021257m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 7.5e-116 421.0 292 75.7
Glyma.12G220600 Glycine max HOM05D004279 ORTHO05D004979 7.5e-116 421.0 294 75.2
Potri.001G405200 Populus trichocarpa HOM05D004279 ORTHO05D004979 9.8e-116 420.6 291 75.9
PGR031G2155 Punica granatum HOM05D004279 ORTHO05D004979 1.7e-115 419.9 293 75.4
QL08p019074 Quercus lobata HOM05D004279 ORTHO05D004979 1.7e-115 419.9 295 74.9
AT3G15530 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.2e-115 419.5 292 75.0
Carub.0003s1526 Capsella rubella HOM05D004279 ORTHO05D004979 2.2e-115 419.5 292 75.0
Ca_01814_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.8e-115 419.1 294 74.5
Ca_30536_v3 Cicer arietinum L. HOM05D004279 ORTHO05D004979 2.8e-115 419.1 294 74.5
Aa31LG8G2770 Aethionema arabicum HOM05D004279 ORTHO05D004979 3.7e-115 418.7 292 75.3
AL3G28110 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 3.7e-115 418.7 292 75.0
ECA246G0789 Erigeron canadensis HOM05D004279 ORTHO05D004979 4.9e-115 418.3 244 84.8
BcaC09g48518 Brassica carinata HOM05D004279 ORTHO05D004979 6.3e-115 417.9 292 75.0
ClCG11G018340 Citrullus lanatus HOM05D004279 ORTHO05D004979 6.3e-115 417.9 290 74.5
BcaB04g20920 Brassica carinata HOM05D004279 ORTHO05D004979 8.3e-115 417.5 292 75.0
A05p33880 Brassica napus HOM05D004279 ORTHO05D004979 8.3e-115 417.5 292 74.3
Sp3g13790 Schrenkiella parvula HOM05D004279 ORTHO05D004979 8.3e-115 417.5 292 74.7
Phvul.005G085300 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.1e-114 417.2 294 74.5
VMungo1080G0833 Vigna mungo HOM05D004279 ORTHO05D004979 1.1e-114 417.2 294 74.5
BcaC05g28964 Brassica carinata HOM05D004279 ORTHO05D004979 1.8e-114 416.4 292 74.7
C05p51590 Brassica napus HOM05D004279 ORTHO05D004979 1.8e-114 416.4 292 74.7
BolC1t04855H Brassica oleracea HOM05D004279 ORTHO05D004979 1.8e-114 416.4 292 74.7
BolC5t33846H Brassica oleracea HOM05D004279 ORTHO05D004979 1.8e-114 416.4 292 74.7
Eucgr.F01088 Eucalyptus grandis HOM05D004279 ORTHO05D004979 1.8e-114 416.4 292 74.3
Potri.011G128300 Populus trichocarpa HOM05D004279 ORTHO05D004979 1.8e-114 416.4 290 74.5
CSS0022309 Camellia sinensis var. sinensis HOM05D004279 ORTHO05D004979 3.1e-114 415.6 295 74.2
Psat4g016400 Pisum sativum HOM05D004279 ORTHO05D004979 3.1e-114 415.6 294 74.1
Prupe.4G187700 Prunus persica HOM05D004279 ORTHO05D004979 4.1e-114 415.2 286 74.1
Sabra16G0266200 Salix brachista HOM05D004279 ORTHO05D004979 4.1e-114 415.2 291 74.9
BraA05t22210Z Brassica rapa HOM05D004279 ORTHO05D004979 7.0e-114 414.5 292 74.0
TAR624G0257 Trochodendron aralioides HOM05D004279 ORTHO05D004979 7.0e-114 414.5 279 76.3
BcaB06g29588 Brassica carinata HOM05D004279 ORTHO05D004979 9.2e-114 414.1 293 74.7
MELO3C018223.2 Cucumis melo HOM05D004279 ORTHO05D004979 9.2e-114 414.1 294 73.8
CsaV3_3G044480 Cucumis sativus L. HOM05D004279 ORTHO05D004979 9.2e-114 414.1 294 73.8
TPR.G38955 Trifolium pratense HOM05D004279 ORTHO05D004979 1.2e-113 413.7 294 74.1
Sc16g0006820 Simmondsia chinensis HOM05D004279 ORTHO05D004979 2.0e-113 412.9 302 72.8
CARHR267680 Cardamine hirsuta HOM05D004279 ORTHO05D004979 2.7e-113 412.5 292 74.0
Medtr2g080130 Medicago truncatula HOM05D004279 ORTHO05D004979 3.5e-113 412.1 294 74.8
Sed0000911 Sechium edule HOM05D004279 ORTHO05D004979 7.8e-113 411.0 290 72.8
THA.LOC104810491 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 7.8e-113 411.0 294 74.8
FAN16G2997 Fragaria x ananassa HOM05D004279 ORTHO05D004979 1.7e-112 409.8 291 73.5
FAN11G1457 Fragaria x ananassa HOM05D004279 ORTHO05D004979 2.3e-112 409.5 291 73.5
AL8G29740 Arabidopsis lyrata HOM05D004279 ORTHO05D004979 2.9e-112 409.1 293 73.4
AT5G54400 Arabidopsis thaliana HOM05D004279 ORTHO05D004979 2.9e-112 409.1 293 73.4
FvH4_3g20760 Fragaria vesca HOM05D004279 ORTHO05D004979 5.0e-112 408.3 291 73.2
CiPaw.12G122100 Carya illinoinensis HOM05D004279 ORTHO05D004979 1.9e-111 406.4 293 74.1
CiPaw.11G174600 Carya illinoinensis HOM05D004279 ORTHO05D004979 2.5e-111 406.0 291 74.2
RcHm_v2.0_Chr5g0034991 Rosa chinensis HOM05D004279 ORTHO05D004979 2.5e-111 406.0 291 72.9
Sp6g16410 Schrenkiella parvula HOM05D004279 ORTHO05D004979 2.5e-111 406.0 292 72.9
A02p10310 Brassica napus HOM05D004279 ORTHO05D004979 3.3e-111 405.6 292 72.3
FAN25G2565 Fragaria x ananassa HOM05D004279 ORTHO05D004979 3.3e-111 405.6 291 73.2
BraA02t06098Z Brassica rapa HOM05D004279 ORTHO05D004979 4.3e-111 405.2 292 72.3
Haze_09505 Corylus avellana HOM05D004279 ORTHO05D004979 4.3e-111 405.2 295 73.6
FAN21G3274 Fragaria x ananassa HOM05D004279 ORTHO05D004979 4.3e-111 405.2 291 72.9
Sed0021920 Sechium edule HOM05D004279 ORTHO05D004979 4.3e-111 405.2 295 73.2
BolC2t07801H Brassica oleracea HOM05D004279 ORTHO05D004979 5.6e-111 404.8 292 71.9
Carub.0008s1473 Capsella rubella HOM05D004279 ORTHO05D004979 5.6e-111 404.8 293 72.7
Cfa020528 Carpinus fangiana HOM05D004279 ORTHO05D004979 5.6e-111 404.8 295 73.6
BraA01t03905Z Brassica rapa HOM05D004279 ORTHO05D004979 7.3e-111 404.4 286 74.8
C02p17040 Brassica napus HOM05D004279 ORTHO05D004979 9.5e-111 404.1 292 71.9
unitig_0.g2258 Utricularia gibba HOM05D004279 ORTHO05D004979 9.5e-111 404.1 301 68.1
SGA_v2.0_scaffold9G04950 Striga asiatica HOM05D004279 ORTHO05D004979 2.1e-110 402.9 301 70.4
A01p38550 Brassica napus HOM05D004279 ORTHO05D004979 2.8e-110 402.5 286 74.5
Aa31LG3G10340 Aethionema arabicum HOM05D004279 ORTHO05D004979 4.7e-110 401.7 294 72.4
C01p48920 Brassica napus HOM05D004279 ORTHO05D004979 4.7e-110 401.7 286 74.1
BcaB05g22132 Brassica carinata HOM05D004279 ORTHO05D004979 6.1e-110 401.4 292 71.6
Eucgr.F03342 Eucalyptus grandis HOM05D004279 ORTHO05D004979 3.1e-109 399.1 294 70.1
MD11G1239200 Malus domestica HOM05D004279 ORTHO05D004979 1.2e-108 397.1 286 71.0
MD03G1221800 Malus domestica HOM05D004279 ORTHO05D004979 4.4e-108 395.2 286 71.3
MBI02_g29384_MAGBIO Magnolia biondii HOM05D004279 ORTHO05D004979 2.2e-107 392.9 292 69.5
BcaC03g14314 Brassica carinata HOM05D004279 ORTHO05D004979 1.9e-106 389.8 280 71.8
Lalb_Chr01g0016991 Lupinus albus HOM05D004279 ORTHO05D004979 1.9e-106 389.8 297 70.4
Lalb_Chr25g0286631 Lupinus albus HOM05D004279 ORTHO05D004979 7.0e-106 387.9 291 71.5
THA.LOC104799915 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 2.7e-105 386.0 288 72.2
SGA_v2.0_scaffold73G24305 Striga asiatica HOM05D004279 ORTHO05D004979 2.3e-104 382.9 296 66.9
THA.LOC104818054 Tarenaya hassleriana HOM05D004279 ORTHO05D004979 3.0e-104 382.5 292 71.2
SHI28037 Sapria himalayana HOM05D004279 ORTHO05D004979 4.7e-102 375.2 287 68.3
Ah.06g183670 Amaranthus hybridus HOM05D004279 ORTHO05D004979 6.2e-102 374.8 307 65.8
Glyma.06G249400 Glycine max HOM05D004279 ORTHO05D004979 2.6e-100 369.4 296 67.2
Glyma.12G148500 Glycine max HOM05D004279 ORTHO05D004979 7.5e-100 367.9 295 67.1
Phvul.011G148200 Phaseolus vulgaris HOM05D004279 ORTHO05D004979 1.3e-99 367.1 295 67.8
EL10Ac4g08091 Beta vulgaris HOM05D004279 ORTHO05D004979 7.0e-98 361.3 310 62.9
AUR62015623 Chenopodium quinoa HOM05D004279 ORTHO05D004979 1.6e-97 360.1 306 64.4
AUR62029338 Chenopodium quinoa HOM05D004279 ORTHO05D004979 3.5e-97 359.0 306 64.1
VMungo1127G1925 Vigna mungo HOM05D004279 ORTHO05D004979 1.5e-95 353.6 295 64.7
Glyma.13G280900 Glycine max HOM05D004279 ORTHO05D004979 8.9e-93 344.4 294 65.3
HPP92_016704 Vanilla planifolia HOM05D004279 ORTHO05D004979 7.5e-92 341.3 298 64.1
SHI18877 Sapria himalayana HOM05D004279 ORTHO05D004979 1.2e-89 334.0 264 67.4
GSVIVG01014410001 Vitis vinifera HOM05D004279 ORTHO05D004979 1.6e-81 307.0 195 82.1
SHI27994 Sapria himalayana HOM05D004279 ORTHO05D004979 7.8e-81 304.7 282 59.2
HanXRQChr08g0235651 Helianthus annuus HOM05D004279 ORTHO05D004979 1.6e-73 280.4 166 85.5
Thhalv10014468m.g Eutrema salsugineum HOM05D004279 ORTHO05D004979 1.3e-72 277.3 234 66.7
SHI27891 Sapria himalayana HOM05D004279 ORTHO05D004979 1.9e-71 273.5 281 54.8
SHI27902 Sapria himalayana HOM05D004279 ORTHO05D004979 1.6e-70 270.4 281 53.4
ATR0693G409 Amborella trichopoda HOM05D004279 ORTHO05D004979 9.3e-66 254.6 277 53.4
Atru.chr2.2812 Acer truncatum HOM05D004279 ORTHO05D004979 1.9e-58 230.3 143 81.1
HanXRQChr08g0235661 Helianthus annuus HOM05D004279 ORTHO05D004979 1.9e-58 230.3 131 85.5
SHI28023 Sapria himalayana HOM05D004279 ORTHO05D004979 1.9e-58 230.3 272 52.6
Mapoly0019s0089 Marchantia polymorpha HOM05D004279 ORTHO05D004979 2.1e-57 226.9 282 46.1
CAN.G162.92 Capsicum annuum HOM05D004279 ORTHO05D004979 1.4e-53 214.2 145 76.6
VMungo1127G2040 Vigna mungo HOM05D004279 ORTHO05D004979 4.1e-45 186.0 152 64.5
CBR_g24389 Chara braunii HOM05D004279 ORTHO05D004979 1.3e-27 127.9 283 31.4
Atru.chr2.2813 Acer truncatum HOM05D004279 ORTHO05D004979 1.0e-24 118.2 104 59.6
Haze_01531 Corylus avellana HOM05D004279 ORTHO05D004979 2.2e-22 110.5 112 55.4
Haze_12044 Corylus avellana HOM05D004279 ORTHO05D004979 9.1e-21 105.1 112 53.6
QL06p019554 Quercus lobata HOM05D004279 ORTHO05D004979 1.6e-20 104.4 71 74.6
Haze_10444 Corylus avellana HOM05D004279 ORTHO05D004979 1.1e-18 98.2 98 56.1
SHI28022 Sapria himalayana HOM05D004279 ORTHO05D004979 8.3e-14 82.0 71 59.2
Haze_13283 Corylus avellana HOM05D004279 ORTHO05D004979 2.1e-09 67.4 87 51.7
Haze_06332 Corylus avellana HOM05D004279 ORTHO05D004979 1.4e-08 64.7 72 52.8
CDE02G4569 Ceratophyllum demersum HOM05D005748 ORTHO05D007123 1.7e-06 57.8 152 30.9
PSO478G3396 Papaver somniferum HOM05D005748 ORTHO05D007123 2.2e-06 57.4 122 37.7


User provided reference genes

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