Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0156361 Helianthus annuus HOM05D002939 ORTHO05D003391 1.4e-113 412.9 206 100.0
HanXRQChr05g0157461 Helianthus annuus HOM05D002939 ORTHO05D003391 1.0e-31 141.0 203 40.9
Lsat_1_v5_gn_5_6961 Lactuca sativa HOM05D002939 ORTHO05D003391 1.0e-23 114.4 162 37.0
HanXRQChr05g0156431 Helianthus annuus HOM05D002939 ORTHO05D003391 2.7e-19 99.8 102 53.9
EL10Ac4g08081 Beta vulgaris HOM05D002939 ORTHO05D003391 4.6e-19 99.0 183 36.1
Peaxi162Scf01111g00019 Petunia axillaris HOM05D002939 ORTHO05D003391 5.0e-18 95.5 223 27.4
Carub.0003s3545 Capsella rubella HOM05D002939 ORTHO05D003391 1.1e-17 94.4 219 29.2
Manes.12G079700 Manihot esculenta HOM05D002939 ORTHO05D003391 1.1e-17 94.4 209 29.2
CARHR111530 Cardamine hirsuta HOM05D002939 ORTHO05D003391 1.5e-17 94.0 220 30.0
Cpa.g.sc34.111 Carica papaya HOM05D002939 ORTHO05D003391 1.5e-17 94.0 209 30.1
AL3G53990 Arabidopsis lyrata HOM05D002939 ORTHO05D003391 1.9e-17 93.6 219 30.1
SGA_v2.0_scaffold34G13712 Striga asiatica HOM05D002939 ORTHO05D003391 3.3e-17 92.8 218 29.4
AT2G20825 Arabidopsis thaliana HOM05D002939 ORTHO05D003391 4.3e-17 92.4 220 30.9
Sp3g34060 Schrenkiella parvula HOM05D002939 ORTHO05D003391 4.3e-17 92.4 222 29.7
MD17G1082000 Malus domestica HOM05D002939 ORTHO05D003391 5.6e-17 92.0 230 27.4
Cc02_g28040 Coffea canephora HOM05D002939 ORTHO05D003391 7.3e-17 91.7 220 28.2
TWI18G0096 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 7.3e-17 91.7 209 30.6
TWI75G1131 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 7.3e-17 91.7 230 29.1
CSS0026767 Camellia sinensis var. sinensis HOM05D002939 ORTHO05D003391 9.5e-17 91.3 230 27.0
Manes.13G150600 Manihot esculenta HOM05D002939 ORTHO05D003391 1.6e-16 90.5 209 30.1
CiPaw.04G123300 Carya illinoinensis HOM05D002939 ORTHO05D003391 2.1e-16 90.1 230 27.4
Os01g0780800 Oryza sativa ssp. japonica HOM05D002939 ORTHO05D003391 2.1e-16 90.1 209 28.7
Gohir.A03G159200 Gossypium hirsutum HOM05D002939 ORTHO05D003391 2.8e-16 89.7 226 28.3
Gohir.D02G182400 Gossypium hirsutum HOM05D002939 ORTHO05D003391 2.8e-16 89.7 226 28.3
Gorai.005G204800 Gossypium raimondii HOM05D002939 ORTHO05D003391 2.8e-16 89.7 226 28.3
Duzib052G0602 Durio zibethinus HOM05D002939 ORTHO05D003391 3.6e-16 89.4 205 29.3
Migut.B00917 Erythranthe guttata HOM05D002939 ORTHO05D003391 4.7e-16 89.0 219 30.6
Migut.E00988 Erythranthe guttata HOM05D002939 ORTHO05D003391 4.7e-16 89.0 218 28.9
BraA07t27786Z Brassica rapa HOM05D002939 ORTHO05D003391 6.2e-16 88.6 220 29.1
Duzib132G0253 Durio zibethinus HOM05D002939 ORTHO05D003391 6.2e-16 88.6 205 29.3
GSVIVG01030570001 Vitis vinifera HOM05D002939 ORTHO05D003391 6.2e-16 88.6 231 27.7
COL.COLO4_13700 Corchorus olitorius HOM05D002939 ORTHO05D003391 8.0e-16 88.2 205 29.3
Migut.E00987 Erythranthe guttata HOM05D002939 ORTHO05D003391 8.0e-16 88.2 218 28.4
BcaC06g36772 Brassica carinata HOM05D002939 ORTHO05D003391 1.1e-15 87.8 220 29.1
C07p00100 Brassica napus HOM05D002939 ORTHO05D003391 1.1e-15 87.8 220 29.1
BolC7t40461H Brassica oleracea HOM05D002939 ORTHO05D003391 1.1e-15 87.8 220 29.1
Dinv15472 Davidia involucrata HOM05D002939 ORTHO05D003391 1.1e-15 87.8 209 27.3
Migut.B00918 Erythranthe guttata HOM05D002939 ORTHO05D003391 1.1e-15 87.8 218 29.4
Thhalv10002089m.g Eutrema salsugineum HOM05D002939 ORTHO05D003391 1.1e-15 87.8 223 27.4
FvH4_6g44900 Fragaria vesca HOM05D002939 ORTHO05D003391 1.1e-15 87.8 209 28.7
FAN14G1254 Fragaria x ananassa HOM05D002939 ORTHO05D003391 1.1e-15 87.8 209 28.7
Thecc.02G173400 Theobroma cacao HOM05D002939 ORTHO05D003391 1.1e-15 87.8 226 27.4
Actinidia30483 Actinidia chinensis HOM05D002939 ORTHO05D003391 1.4e-15 87.4 208 29.3
MELO3C018202.2 Cucumis melo HOM05D002939 ORTHO05D003391 1.4e-15 87.4 208 28.8
Gohir.A12G137100 Gossypium hirsutum HOM05D002939 ORTHO05D003391 1.4e-15 87.4 205 28.8
Gohir.D12G141000 Gossypium hirsutum HOM05D002939 ORTHO05D003391 1.4e-15 87.4 227 27.8
Gorai.008G152400 Gossypium raimondii HOM05D002939 ORTHO05D003391 1.4e-15 87.4 227 27.8
CiPaw.03G170900 Carya illinoinensis HOM05D002939 ORTHO05D003391 1.8e-15 87.0 230 27.0
Duzib248G1539 Durio zibethinus HOM05D002939 ORTHO05D003391 1.8e-15 87.0 226 27.9
MD09G1092100 Malus domestica HOM05D002939 ORTHO05D003391 1.8e-15 87.0 230 27.0
RcHm_v2.0_Chr2g0162081 Rosa chinensis HOM05D002939 ORTHO05D003391 1.8e-15 87.0 230 27.0
CsaV3_3G044410 Cucumis sativus L. HOM05D002939 ORTHO05D003391 2.3e-15 86.7 208 26.9
Nn1g06722 Nelumbo nucifera HOM05D002939 ORTHO05D003391 2.3e-15 86.7 234 28.6
Psat5g270120 Pisum sativum HOM05D002939 ORTHO05D003391 2.3e-15 86.7 190 29.5
Potri.013G145400 Populus trichocarpa HOM05D002939 ORTHO05D003391 2.3e-15 86.7 230 27.8
Potri.019G104500 Populus trichocarpa HOM05D002939 ORTHO05D003391 2.3e-15 86.7 230 27.4
PGR142G4146 Punica granatum HOM05D002939 ORTHO05D003391 2.3e-15 86.7 228 27.6
Ciclev10016505m.g Citrus clementina HOM05D002939 ORTHO05D003391 3.1e-15 86.3 229 28.8
Cc00_g21110 Coffea canephora HOM05D002939 ORTHO05D003391 3.1e-15 86.3 225 27.1
Migut.E00991 Erythranthe guttata HOM05D002939 ORTHO05D003391 4.0e-15 85.9 218 29.8
Nitab4.5_0009520g0010 Nicotiana tabacum HOM05D002939 ORTHO05D003391 4.0e-15 85.9 229 25.8
HPP92_001810 Vanilla planifolia HOM05D002939 ORTHO05D003391 4.0e-15 85.9 209 26.8
Atru.chr6.3050 Acer truncatum HOM05D002939 ORTHO05D003391 5.2e-15 85.5 204 27.5
Aa31LG8G17660 Aethionema arabicum HOM05D002939 ORTHO05D003391 5.2e-15 85.5 222 27.9
Aqoxy4G01374 Aquilegia oxysepala HOM05D002939 ORTHO05D003391 5.2e-15 85.5 203 28.6
CSS0037606 Camellia sinensis var. sinensis HOM05D002939 ORTHO05D003391 5.2e-15 85.5 230 26.1
Manes.15G083700 Manihot esculenta HOM05D002939 ORTHO05D003391 5.2e-15 85.5 204 27.5
Prupe.3G232900 Prunus persica HOM05D002939 ORTHO05D003391 5.2e-15 85.5 230 26.5
BcaC06g32639 Brassica carinata HOM05D002939 ORTHO05D003391 6.8e-15 85.1 224 26.3
A03p57900 Brassica napus HOM05D002939 ORTHO05D003391 6.8e-15 85.1 224 26.3
C07p56020 Brassica napus HOM05D002939 ORTHO05D003391 6.8e-15 85.1 224 26.3
BraA03t14854Z Brassica rapa HOM05D002939 ORTHO05D003391 6.8e-15 85.1 224 26.3
ClCG02G001270 Citrullus lanatus HOM05D002939 ORTHO05D003391 6.8e-15 85.1 226 27.9
PSO832G1320 Papaver somniferum HOM05D002939 ORTHO05D003391 6.8e-15 85.1 230 27.4
PGSC0003DMG400018322 Solanum tuberosum HOM05D002939 ORTHO05D003391 6.8e-15 85.1 225 27.1
BcaB03g16872 Brassica carinata HOM05D002939 ORTHO05D003391 8.9e-15 84.7 203 30.0
FAN05G5001 Fragaria x ananassa HOM05D002939 ORTHO05D003391 8.9e-15 84.7 209 29.7
Sed0025006 Sechium edule HOM05D002939 ORTHO05D003391 8.9e-15 84.7 224 28.6
HanXRQChr10g0297091 Helianthus annuus HOM05D002939 ORTHO05D003391 1.2e-14 84.3 221 27.1
TAR626G0871 Trochodendron aralioides HOM05D002939 ORTHO05D003391 1.2e-14 84.3 230 27.4
Dinv23696 Davidia involucrata HOM05D002939 ORTHO05D003391 1.5e-14 84.0 230 26.1
PSO210G1245 Papaver somniferum HOM05D002939 ORTHO05D003391 1.5e-14 84.0 230 27.0
THA.LOC104814495 Tarenaya hassleriana HOM05D002939 ORTHO05D003391 1.5e-14 84.0 220 27.3
vmacro09269 Vaccinium macrocarpon HOM05D002939 ORTHO05D003391 1.5e-14 84.0 204 28.4
Zm00001eb369850 Zea mays HOM05D002939 ORTHO05D003391 1.5e-14 84.0 229 26.6
Thhalv10026038m.g Eutrema salsugineum HOM05D002939 ORTHO05D003391 2.0e-14 83.6 224 25.0
Lj3g0000198 Lotus japonicus HOM05D002939 ORTHO05D003391 2.0e-14 83.6 227 26.0
Solyc07g054450.4 Solanum lycopersicum HOM05D002939 ORTHO05D003391 2.0e-14 83.6 204 28.4
Sopen07g028390 Solanum pennellii HOM05D002939 ORTHO05D003391 2.0e-14 83.6 204 28.4
PSO675G2902 Papaver somniferum HOM05D002939 ORTHO05D003391 2.6e-14 83.2 225 25.8
SEGI_02317 Sequoiadendron giganteum HOM05D002939 ORTHO05D003391 2.6e-14 83.2 205 29.8
Aqoxy1G02703 Aquilegia oxysepala HOM05D002939 ORTHO05D003391 3.4e-14 82.8 223 26.0
arahy.Tifrunner.gnm1.ann1.A9FWXT Arachis hypogaea HOM05D002939 ORTHO05D003391 3.4e-14 82.8 199 28.1
arahy.Tifrunner.gnm1.ann1.SAD4HJ Arachis hypogaea HOM05D002939 ORTHO05D003391 3.4e-14 82.8 199 28.1
C01p24640 Brassica napus HOM05D002939 ORTHO05D003391 3.4e-14 82.8 224 26.3
Duzib268G1116 Durio zibethinus HOM05D002939 ORTHO05D003391 3.4e-14 82.8 208 27.9
Nitab4.5_0003018g0050 Nicotiana tabacum HOM05D002939 ORTHO05D003391 3.4e-14 82.8 229 24.9
CANSAT11G1650 Cannabis sativa HOM05D002939 ORTHO05D003391 4.4e-14 82.4 208 26.4
CARHR235900 Cardamine hirsuta HOM05D002939 ORTHO05D003391 4.4e-14 82.4 224 26.3
MELO3C018761.2 Cucumis melo HOM05D002939 ORTHO05D003391 4.4e-14 82.4 233 27.9
CsaV3_7G004160 Cucumis sativus L. HOM05D002939 ORTHO05D003391 4.4e-14 82.4 226 27.4
Lalb_Chr01g0005401 Lupinus albus HOM05D002939 ORTHO05D003391 4.4e-14 82.4 226 26.5
DCAR_012987 Daucus carota HOM05D002939 ORTHO05D003391 5.8e-14 82.0 221 26.7
Glyma.06G297100 Glycine max HOM05D002939 ORTHO05D003391 5.8e-14 82.0 225 27.1
Medtr0072s0040 Medicago truncatula HOM05D002939 ORTHO05D003391 5.8e-14 82.0 204 28.4
A01p19610 Brassica napus HOM05D002939 ORTHO05D003391 7.5e-14 81.6 224 25.9
Sed0018022 Sechium edule HOM05D002939 ORTHO05D003391 7.5e-14 81.6 209 27.3
CANSAT64G1668 Cannabis sativa HOM05D002939 ORTHO05D003391 9.8e-14 81.3 226 26.5
Lalb_Chr03g0029231 Lupinus albus HOM05D002939 ORTHO05D003391 9.8e-14 81.3 223 26.5
Psat7g199800 Pisum sativum HOM05D002939 ORTHO05D003391 9.8e-14 81.3 225 27.1
Carub.0007s1257 Capsella rubella HOM05D002939 ORTHO05D003391 1.3e-13 80.9 225 26.2
MBI02_g10552_MAGBIO Magnolia biondii HOM05D002939 ORTHO05D003391 1.3e-13 80.9 209 26.3
Peaxi162Scf00007g02859 Petunia axillaris HOM05D002939 ORTHO05D003391 1.3e-13 80.9 209 27.8
Sp7g26140 Schrenkiella parvula HOM05D002939 ORTHO05D003391 1.3e-13 80.9 224 26.3
TPR.G27079 Trifolium pratense HOM05D002939 ORTHO05D003391 1.3e-13 80.9 226 27.0
FAN02G0547 Fragaria x ananassa HOM05D002939 ORTHO05D003391 1.7e-13 80.5 229 27.1
TPR.G21653 Trifolium pratense HOM05D002939 ORTHO05D003391 1.7e-13 80.5 205 28.3
Aa31LG2G22060 Aethionema arabicum HOM05D002939 ORTHO05D003391 2.2e-13 80.1 225 26.7
BcaC09g50506 Brassica carinata HOM05D002939 ORTHO05D003391 2.2e-13 80.1 223 26.0
Sed0013833 Sechium edule HOM05D002939 ORTHO05D003391 2.2e-13 80.1 209 25.8
DCAR_021229 Daucus carota HOM05D002939 ORTHO05D003391 2.9e-13 79.7 224 26.3
Lj3g0016336 Lotus japonicus HOM05D002939 ORTHO05D003391 2.9e-13 79.7 220 26.4
Oeu041295.1 Olea europaea HOM05D002939 ORTHO05D003391 3.7e-13 79.3 230 25.2
Lsat_1_v5_gn_3_39261 Lactuca sativa HOM05D002939 ORTHO05D003391 4.9e-13 79.0 225 25.8
Medtr2g090080 Medicago truncatula HOM05D002939 ORTHO05D003391 4.9e-13 79.0 204 27.0
Nitab4.5_0007732g0030 Nicotiana tabacum HOM05D002939 ORTHO05D003391 4.9e-13 79.0 223 25.1
Oeu060538.1 Olea europaea HOM05D002939 ORTHO05D003391 4.9e-13 79.0 199 27.6
ECA234G1210 Erigeron canadensis HOM05D002939 ORTHO05D003391 8.3e-13 78.2 224 26.3
Migut.B00919 Erythranthe guttata HOM05D002939 ORTHO05D003391 8.3e-13 78.2 199 29.1
Lj8A116T74 Lonicera japonica HOM05D002939 ORTHO05D003391 8.3e-13 78.2 225 24.9
Os05g0502700 Oryza sativa ssp. japonica HOM05D002939 ORTHO05D003391 8.3e-13 78.2 220 27.3
THA.LOC104804063 Tarenaya hassleriana HOM05D002939 ORTHO05D003391 8.3e-13 78.2 225 24.9
AT4G28190 Arabidopsis thaliana HOM05D002939 ORTHO05D003391 1.1e-12 77.8 224 25.4
Phvul.011G112300 Phaseolus vulgaris HOM05D002939 ORTHO05D003391 1.4e-12 77.4 230 26.1
CAN.G274.5 Capsicum annuum HOM05D002939 ORTHO05D003391 1.9e-12 77.0 201 28.9
CAN.G318.16 Capsicum annuum HOM05D002939 ORTHO05D003391 1.9e-12 77.0 201 28.9
Eucgr.K00939 Eucalyptus grandis HOM05D002939 ORTHO05D003391 1.9e-12 77.0 205 26.3
Lsat_1_v5_gn_4_68920 Lactuca sativa HOM05D002939 ORTHO05D003391 1.9e-12 77.0 222 27.5
Lj3g0001486 Lotus japonicus HOM05D002939 ORTHO05D003391 2.4e-12 76.6 183 32.8
SHI10467 Sapria himalayana HOM05D002939 ORTHO05D003391 2.4e-12 76.6 230 25.7
AL7G24410 Arabidopsis lyrata HOM05D002939 ORTHO05D003391 3.2e-12 76.3 225 25.8
Sopen12g005240 Solanum pennellii HOM05D002939 ORTHO05D003391 3.2e-12 76.3 224 26.3
BcaNung01589 Brassica carinata HOM05D002939 ORTHO05D003391 1.2e-11 74.3 224 25.4
Cc05_g03010 Coffea canephora HOM05D002939 ORTHO05D003391 2.7e-11 73.2 212 24.5
Solyc12g010370.1 Solanum lycopersicum HOM05D002939 ORTHO05D003391 2.7e-11 73.2 220 26.4
Solyc12g010755.1 Solanum lycopersicum HOM05D002939 ORTHO05D003391 2.7e-11 73.2 220 26.4
Atru.chr2.2835 Acer truncatum HOM05D002939 ORTHO05D003391 4.6e-11 72.4 207 27.5
Actinidia05140 Actinidia chinensis HOM05D002939 ORTHO05D003391 6.0e-11 72.0 53 60.4
FAN09G4592 Fragaria x ananassa HOM05D002939 ORTHO05D003391 6.0e-11 72.0 87 43.7
Lj3g0007977 Lotus japonicus HOM05D002939 ORTHO05D003391 6.0e-11 72.0 197 31.5
Lj8A159T101 Lonicera japonica HOM05D002939 ORTHO05D003391 1.0e-10 71.2 156 28.2
Peaxi162Scf00485g00037 Petunia axillaris HOM05D002939 ORTHO05D003391 1.0e-10 71.2 62 48.4
BolC1t02414H Brassica oleracea HOM05D002939 ORTHO05D003391 1.3e-10 70.9 53 58.5
BraA01t01895Z Brassica rapa HOM05D002939 ORTHO05D003391 1.3e-10 70.9 53 58.5
Glyma.12G108000 Glycine max HOM05D002939 ORTHO05D003391 1.3e-10 70.9 87 42.5
Nitab4.5_0002565g0070 Nicotiana tabacum HOM05D002939 ORTHO05D003391 1.3e-10 70.9 223 24.7
BolC7t46079H Brassica oleracea HOM05D002939 ORTHO05D003391 1.7e-10 70.5 53 58.5
HanXRQChr05g0140461 Helianthus annuus HOM05D002939 ORTHO05D003391 1.7e-10 70.5 224 25.0
Sabra13G0117100 Salix brachista HOM05D002939 ORTHO05D003391 2.3e-10 70.1 54 55.6
Glyma.06G252100 Glycine max HOM05D002939 ORTHO05D003391 3.0e-10 69.7 206 27.2
Nn1g03934 Nelumbo nucifera HOM05D002939 ORTHO05D003391 6.6e-10 68.6 87 42.5
Duzib213G0790 Durio zibethinus HOM05D002939 ORTHO05D003391 1.9e-09 67.0 208 24.5
Lalb_Chr22g0356401 Lupinus albus HOM05D002939 ORTHO05D003391 2.5e-09 66.6 87 40.2
Cpa.g.sc80.104 Carica papaya HOM05D002939 ORTHO05D003391 3.3e-09 66.2 54 55.6
RcHm_v2.0_Chr5g0035151 Rosa chinensis HOM05D002939 ORTHO05D003391 4.3e-09 65.9 129 33.3
Thecc.07G073100 Theobroma cacao HOM05D002939 ORTHO05D003391 5.6e-09 65.5 54 53.7
CiPaw.11G175200 Carya illinoinensis HOM05D002939 ORTHO05D003391 7.3e-09 65.1 86 38.4
TWI38G1430 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 7.3e-09 65.1 211 24.6
PSO541G3829 Papaver somniferum HOM05D002939 ORTHO05D003391 9.5e-09 64.7 225 23.6
Nitab4.5_0000297g0080 Nicotiana tabacum HOM05D002939 ORTHO05D003391 1.2e-08 64.3 217 24.0
HanXRQChr17g0542471 Helianthus annuus HOM05D002939 ORTHO05D003391 1.6e-08 63.9 54 51.9
COL.COLO4_09468 Corchorus olitorius HOM05D002939 ORTHO05D003391 3.6e-08 62.8 71 39.4
TWI38G0298 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 6.2e-08 62.0 211 24.2
TWI38G0608 Tripterygium wilfordii HOM05D002939 ORTHO05D003391 1.1e-07 61.2 211 23.7
Eucgr.F03351 Eucalyptus grandis HOM05D002939 ORTHO05D003391 1.4e-07 60.8 202 25.7
Migut.E00993 Erythranthe guttata HOM05D002939 ORTHO05D003391 2.6e-06 56.6 202 24.3
Lalb_Chr19g0134441 Lupinus albus HOM05D002939 ORTHO05D003391 3.4e-06 56.2 50 50.0


User provided reference genes

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