Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 4.0e-138 495.0 286 100.0
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 1.1e-111 407.1 292 81.8
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 5.4e-95 351.7 305 75.1
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 1.5e-92 343.6 286 67.8
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 2.4e-90 336.3 292 73.3
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 1.5e-89 333.6 292 72.9
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 2.6e-89 332.8 250 68.4
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 3.4e-89 332.4 293 64.8
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 3.4e-89 332.4 293 64.8
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 7.6e-89 331.3 295 67.8
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 1.9e-87 326.6 247 72.9
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 1.6e-86 323.6 252 69.4
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 2.7e-86 322.8 303 62.4
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 2.7e-86 322.8 292 70.5
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 6.0e-86 321.6 288 70.8
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 6.0e-86 321.6 209 75.1
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 1.0e-85 320.9 300 67.7
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 1.0e-85 320.9 285 68.8
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 1.0e-85 320.9 301 63.8
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.0e-85 320.9 295 64.4
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 1.0e-85 320.9 295 64.4
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 1.0e-85 320.9 212 84.4
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 2.3e-85 319.7 289 69.9
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 3.0e-85 319.3 298 63.8
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 3.9e-85 318.9 213 72.8
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 3.9e-85 318.9 212 84.0
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 6.6e-85 318.2 284 66.9
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 6.6e-85 318.2 303 69.0
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 8.7e-85 317.8 245 66.1
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 1.1e-84 317.4 303 66.3
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 1.1e-84 317.4 287 65.9
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 4.3e-84 315.5 286 66.1
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 5.6e-84 315.1 209 76.1
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 5.6e-84 315.1 288 68.8
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 7.3e-84 314.7 292 63.4
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 9.6e-84 314.3 313 58.1
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 2.8e-83 312.8 287 66.9
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 8.1e-83 311.2 209 80.4
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.4e-82 309.7 206 79.6
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 3.1e-82 309.3 209 72.2
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 4.0e-82 308.9 209 79.9
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 5.3e-82 308.5 212 71.2
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 5.3e-82 308.5 243 77.4
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 6.9e-82 308.1 243 77.4
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 2.0e-81 306.6 297 64.0
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 4.4e-81 305.4 296 64.2
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 1.3e-80 303.9 299 60.5
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 2.2e-80 303.1 208 72.1
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 2.9e-80 302.8 213 80.8
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 8.4e-80 301.2 206 81.1
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 1.1e-79 300.8 210 79.0
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.1e-79 300.8 210 78.1
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.4e-79 300.4 206 79.1
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 2.4e-79 299.7 206 80.6
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.4e-79 299.7 206 80.6
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 2.4e-79 299.7 238 64.3
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 3.2e-79 299.3 297 66.3
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 5.4e-79 298.5 206 70.9
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 5.4e-79 298.5 209 71.3
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 9.3e-79 297.7 208 72.1
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.1e-78 296.6 206 80.1
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 2.1e-78 296.6 212 71.7
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 4.6e-78 295.4 306 60.5
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.0e-77 294.3 240 70.0
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.0e-77 294.3 213 78.4
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.3e-77 293.9 220 67.7
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 1.3e-77 293.9 206 74.8
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.3e-77 293.9 206 69.9
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 1.7e-77 293.5 207 77.8
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 2.3e-77 293.1 206 70.9
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 3.0e-77 292.7 210 76.7
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 1.5e-76 290.4 242 64.9
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 1.9e-76 290.0 208 67.8
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 4.3e-76 288.9 206 69.4
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 4.3e-76 288.9 242 61.2
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 3.6e-75 285.8 247 60.3
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.4e-74 283.1 192 72.9
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 3.1e-74 282.7 194 71.1
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 4.0e-74 282.3 286 61.9
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 5.3e-74 282.0 242 66.9
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 1.2e-73 280.8 212 67.0
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 2.0e-73 280.0 245 62.4
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 5.8e-73 278.5 209 64.6
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 1.1e-71 274.2 204 72.5
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 2.4e-71 273.1 210 68.6
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 2.4e-71 273.1 209 63.6
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 4.6e-70 268.9 209 67.0
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 3.9e-69 265.8 296 52.4
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 2.5e-68 263.1 208 70.2
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 3.3e-68 262.7 211 62.1
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.6e-67 260.4 250 54.4
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 8.1e-67 258.1 209 73.2
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 1.1e-66 257.7 223 63.2
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 1.4e-66 257.3 256 67.6
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 1.4e-66 257.3 215 61.4
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 1.8e-66 256.9 142 83.1
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 2.6e-65 253.1 251 56.2
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 5.8e-65 251.9 206 61.7
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 1.7e-64 250.4 189 67.7
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 9.3e-63 244.6 246 60.2
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 3.9e-61 239.2 310 47.7
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 8.7e-61 238.0 211 57.8
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 2.6e-57 226.5 227 63.9
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 3.0e-53 213.0 118 83.9
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 5.0e-48 195.7 201 59.2
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 7.4e-44 181.8 227 59.5
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.3e-40 171.0 153 60.8
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.1e-36 157.9 134 61.2
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 8.8e-29 131.7 176 42.0
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 4.4e-28 129.4 204 47.5
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 6.1e-22 109.0 179 40.2
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 1.4e-21 107.8 63 76.2
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 1.8e-21 107.5 184 51.6
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 5.7e-20 102.4 85 65.9
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 7.5e-20 102.1 85 65.9
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.7e-19 100.9 134 42.5
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 6.3e-19 99.0 100 55.0
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 2.9e-16 90.1 91 53.8
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 2.5e-15 87.0 55 72.7
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 8.0e-14 82.0 75 57.3
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 1.4e-13 81.3 107 39.3
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 1.7e-11 74.3 86 53.5
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 3.7e-11 73.2 122 44.3
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 5.4e-10 69.3 136 38.2
SMO203G0209 Selaginella moellendorffii HOM05D001043 ORTHO05D006432 7.8e-09 65.5 131 29.8
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 1.7e-08 64.3 138 31.9
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.8e-08 63.2 162 34.6
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 3.8e-08 63.2 147 34.7
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 1.5e-07 61.2 137 32.8
Medtr4g068130 Medicago truncatula HOM05D001043 ORTHO05D006432 1.5e-07 61.2 137 35.0
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 3.3e-07 60.1 141 33.3
Thecc.04G175400 Theobroma cacao HOM05D001043 ORTHO05D006432 5.6e-07 59.3 137 32.8
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 7.3e-07 58.9 113 37.2
VMungo1127G0978 Vigna mungo HOM05D001043 ORTHO05D006432 7.3e-07 58.9 112 36.6
CiPaw.02G052200 Carya illinoinensis HOM05D001043 ORTHO05D006432 9.5e-07 58.5 112 35.7
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 1.6e-06 57.8 136 32.4
FAN07G1629 Fragaria x ananassa HOM05D001043 ORTHO05D006432 2.1e-06 57.4 118 30.5
TAR636G2727 Trochodendron aralioides HOM05D001043 ORTHO05D006432 3.6e-06 56.6 120 35.8
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 6.1e-06 55.8 134 30.6
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 6.1e-06 55.8 134 29.9


User provided reference genes

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