Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 0.0e+00 1134.0 549 100.0
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 8.8e-203 710.7 555 66.8
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 5.9e-199 698.0 564 61.0
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 2.7e-196 689.1 502 65.7
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 4.1e-192 675.2 565 58.6
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 2.7e-191 672.5 487 65.5
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 4.5e-191 671.8 555 60.2
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 1.3e-190 670.2 573 58.8
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 1.7e-190 669.8 487 65.3
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.7e-190 669.8 619 56.2
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 6.6e-190 667.9 485 65.8
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 1.9e-189 666.4 487 65.9
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.5e-189 666.0 555 59.8
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.5e-189 664.8 571 58.5
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 2.8e-188 662.5 545 61.3
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.0e-187 660.6 519 62.2
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 2.6e-186 656.0 486 63.8
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 3.4e-186 655.6 550 60.2
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 4.4e-186 655.2 486 64.0
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 5.7e-186 654.8 465 70.3
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 5.7e-186 654.8 486 64.0
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 7.5e-186 654.4 486 64.2
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 1.1e-184 650.6 549 60.5
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 1.1e-184 650.6 545 58.5
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 3.1e-184 649.0 551 58.3
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 3.1e-184 649.0 577 56.7
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 9.2e-184 647.5 491 62.7
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 2.7e-183 646.0 487 63.2
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 2.7e-183 646.0 551 59.2
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 3.5e-183 645.6 543 59.5
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 1.0e-182 644.0 546 57.3
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 2.3e-182 642.9 518 60.2
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 5.0e-182 641.7 498 60.6
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 5.0e-182 641.7 547 59.0
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 6.6e-182 641.3 482 63.1
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 1.5e-181 640.2 555 57.5
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 1.9e-181 639.8 544 57.7
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 2.5e-181 639.4 545 58.3
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 2.5e-181 639.4 480 62.7
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 5.6e-181 638.3 492 62.8
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 2.8e-180 636.0 518 59.1
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 4.7e-180 635.2 473 65.5
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 8.0e-180 634.4 535 58.7
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 1.0e-179 634.0 555 56.9
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.4e-179 633.6 489 62.4
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 1.4e-179 633.6 547 57.6
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 2.3e-179 632.9 489 61.6
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.1e-179 632.5 489 62.4
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 5.2e-179 631.7 557 55.7
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 6.8e-179 631.3 559 58.3
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 1.2e-178 630.6 539 58.8
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 1.2e-178 630.6 495 60.6
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 1.5e-178 630.2 494 61.1
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 2.0e-178 629.8 539 58.8
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 7.5e-178 627.9 489 61.8
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 1.3e-177 627.1 481 60.7
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.1e-176 624.0 512 59.2
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.1e-176 624.0 543 57.1
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 1.4e-176 623.6 489 60.1
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 3.2e-176 622.5 486 61.5
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 1.6e-175 620.2 481 60.5
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 2.7e-175 619.4 543 56.9
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 2.7e-175 619.4 532 57.3
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 4.6e-175 618.6 489 61.8
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 6.0e-175 618.2 508 58.5
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 9.5e-173 610.9 542 57.7
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 2.1e-172 609.8 548 57.8
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 6.2e-172 608.2 535 57.0
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 8.0e-172 607.8 484 60.3
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 1.1e-171 607.4 494 59.3
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.1e-171 607.4 528 57.2
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.8e-171 606.7 503 58.3
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 5.2e-171 605.1 484 59.7
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 2.6e-170 602.8 487 59.8
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 4.4e-170 602.1 561 54.2
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 5.8e-170 601.7 484 59.9
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 7.5e-170 601.3 502 57.8
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 1.3e-169 600.5 484 59.1
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 1.1e-168 597.4 484 59.7
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 3.2e-168 595.9 503 58.1
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 5.4e-168 595.1 512 57.6
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 3.9e-166 589.0 445 61.6
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 1.1e-163 580.9 484 57.6
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 1.5e-162 577.0 484 57.4
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 2.6e-162 576.2 542 53.7
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 5.8e-162 575.1 554 53.1
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 9.9e-162 574.3 389 67.6
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 1.7e-161 573.5 484 57.2
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 6.4e-161 571.6 479 58.2
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.7e-159 566.2 553 52.6
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 1.3e-158 563.9 521 55.1
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 7.3e-157 558.1 494 57.5
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 1.8e-155 553.5 505 53.7
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 2.8e-140 503.1 545 49.5
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 3.6e-140 502.7 368 63.9
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 2.4e-139 500.0 400 60.5
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 5.3e-139 498.8 439 55.6
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 2.0e-138 496.9 511 49.1
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.1e-136 491.1 404 61.1
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 3.5e-135 486.1 385 58.2
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 9.6e-133 478.0 437 58.1
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 3.4e-130 469.5 347 63.7
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 4.5e-130 469.2 612 44.0
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 1.0e-126 458.0 346 61.8
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 5.1e-126 455.7 338 66.6
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 3.7e-124 449.5 327 64.5
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 4.8e-124 449.1 443 48.3
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 6.5e-121 438.7 346 61.0
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.8e-115 420.6 346 56.6
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 3.4e-114 416.4 496 43.5
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 1.9e-112 410.6 481 47.2
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 8.8e-110 401.7 506 45.1
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 6.9e-107 392.1 502 41.8
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 2.6e-106 390.2 299 60.9
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 1.1e-104 384.8 299 60.5
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.4e-102 377.9 317 59.3
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 1.4e-99 367.9 374 53.7
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 1.0e-94 351.7 253 67.2
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.6e-93 347.1 258 63.6
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 4.0e-86 323.2 301 56.8
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.2e-82 311.6 258 57.4
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 2.2e-81 307.4 491 34.6
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 3.4e-77 293.5 219 63.0
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.7e-74 283.9 218 62.8
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.6e-71 274.6 249 57.0
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 6.8e-62 242.7 144 75.7
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.8e-55 220.7 172 59.9
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 3.6e-55 220.3 167 63.5
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.3e-52 211.8 161 61.5
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.4e-51 207.6 133 69.9
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 1.5e-37 161.8 173 57.2
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 6.6e-33 146.4 236 39.4
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 8.1e-31 139.4 96 70.8
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 1.1e-30 139.0 104 67.3
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 2.0e-29 134.8 199 41.7
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 2.0e-29 134.8 150 44.0
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 3.8e-28 130.6 163 38.0
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 9.3e-27 125.9 108 61.1
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 1.6e-26 125.2 97 64.9
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 1.3e-25 122.1 90 67.8
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 6.9e-22 109.8 83 62.7
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 2.6e-13 81.3 129 41.9
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.5e-08 65.5 75 44.0
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 2.8e-07 61.2 67 41.8


User provided reference genes

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