Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1960.7 1007 100.0
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1582.8 1018 80.0
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1516.9 1005 78.4
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1261.9 1014 64.0
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1246.5 1017 62.8
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1242.3 1006 64.0
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1234.9 1035 61.1
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1229.2 1005 61.8
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1225.7 1018 63.0
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1204.5 1006 60.8
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1195.3 1006 60.4
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1193.3 1005 61.4
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1189.1 1004 61.0
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1180.6 1001 60.7
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1177.5 998 60.3
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1175.2 1021 59.6
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1174.5 997 60.4
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1171.8 1021 61.2
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1168.3 1012 59.6
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1165.2 1000 59.5
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1164.4 1061 58.8
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1161.4 1009 59.5
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1160.2 1009 59.1
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1159.8 1003 59.8
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1155.2 1010 59.3
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1153.3 1002 59.8
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1153.3 1010 59.5
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1152.5 1016 59.3
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1151.3 999 60.7
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1151.3 1017 59.0
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1150.6 1026 59.0
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1150.2 1027 58.6
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1148.3 997 60.2
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1147.5 1010 59.3
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1137.9 1001 58.0
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1135.9 1009 59.4
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1135.2 1010 58.0
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1131.7 1014 58.1
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1131.7 1006 58.1
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1129.8 1007 58.3
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1126.3 1014 57.8
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1125.2 1001 59.1
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1123.2 1012 57.0
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 0.0e+00 1120.5 1012 57.6
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 0.0e+00 1118.2 1014 57.1
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1118.2 1001 58.7
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 0.0e+00 1107.0 1007 57.5
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1102.8 1009 57.3
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1101.3 1005 57.1
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1099.0 1003 57.0
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1095.1 1016 56.1
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1092.8 1014 55.5
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1086.6 1014 55.8
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 0.0e+00 1084.3 1017 55.3
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1082.8 1012 56.1
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1082.4 1011 55.8
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 0.0e+00 1082.0 1029 56.1
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1077.8 994 57.2
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 2.1e-311 1072.4 1006 55.7
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 1.8e-310 1069.3 1004 56.0
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 2.3e-310 1068.9 1010 55.0
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 1.2e-309 1066.6 1012 55.6
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 1.7e-308 1062.8 995 55.8
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 2.2e-308 1062.4 1036 55.3
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 8.3e-308 1060.4 995 56.2
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 4.6e-306 1054.7 891 61.3
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 9.5e-304 1047.0 939 58.5
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 1.1e-302 1043.5 1008 55.2
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 2.3e-302 1042.3 1006 55.1
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 4.9e-300 1034.6 1002 54.5
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 8.6e-297 1023.8 1006 54.3
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 4.3e-296 1021.5 1008 53.7
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 3.2e-291 1005.4 1007 53.5
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 5.4e-291 1004.6 1029 52.6
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 2.1e-290 1002.7 1007 53.4
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 3.5e-290 1001.9 1012 53.3
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 7.3e-288 994.2 1027 52.4
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 1.2e-287 993.4 999 53.5
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 4.0e-286 988.4 978 53.1
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 1.2e-285 986.9 1013 53.1
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 1.3e-284 983.4 1003 53.4
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 1.1e-283 980.3 1027 52.2
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 2.4e-283 979.2 1033 53.3
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 2.7e-282 975.7 1014 50.7
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 4.0e-278 961.8 897 55.5
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 4.5e-277 958.4 828 61.0
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 1.6e-271 939.9 969 53.1
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 9.3e-267 924.1 1007 50.7
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 3.8e-260 902.1 999 47.6
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 2.1e-258 896.3 997 48.7
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 1.1e-246 857.4 766 59.0
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 1.1e-240 837.4 748 57.5
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 5.9e-237 825.1 1021 45.6
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 5.6e-203 712.2 661 58.4
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.8e-186 656.8 586 56.3
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.4e-184 649.8 644 53.9
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.7e-183 647.5 644 53.7
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 4.3e-171 606.3 617 53.3
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 1.3e-162 578.2 1064 35.3
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 5.1e-156 556.2 1075 34.9
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 5.3e-153 546.2 550 56.5
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 1.3e-135 488.4 890 37.5
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 1.9e-134 484.6 516 52.3
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 1.8e-132 478.0 346 68.2
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 1.8e-105 388.3 382 50.5
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.5e-94 352.1 322 56.8
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 1.6e-93 348.6 844 31.5
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 6.8e-92 343.2 437 43.5
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 3.4e-91 340.9 845 31.5
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 4.6e-72 277.3 356 41.6
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 8.4e-58 229.9 257 48.6
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 2.8e-53 214.9 149 69.8
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.1e-49 203.0 223 50.2
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 1.7e-47 195.7 543 29.8
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.9e-41 175.6 161 59.0
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 4.2e-41 174.5 148 63.5
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 2.1e-32 145.6 229 42.8
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 1.5e-30 139.4 214 47.7
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 1.1e-25 123.2 77 75.3
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.9e-25 122.5 211 34.6
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.5e-25 122.1 85 63.5
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 4.2e-25 121.3 433 26.8
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 1.3e-23 116.3 103 59.2
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 5.1e-23 114.4 144 42.4
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.8e-21 108.6 147 40.8
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 4.5e-19 101.3 113 49.6
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 2.2e-18 99.0 113 47.8
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 2.9e-18 98.6 169 36.7
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 3.7e-13 81.6 55 61.8
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 3.7e-13 81.6 55 61.8
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 4.8e-13 81.3 93 46.2
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 1.5e-11 76.3 64 57.8
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 2.0e-11 75.9 143 37.1
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 2.9e-10 72.0 50 60.0
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 2.1e-08 65.9 384 26.0
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 2.7e-08 65.5 64 51.6
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 4.7e-08 64.7 40 72.5
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 2.6e-06 58.9 208 25.5
MD00G1179800 Malus domestica HOM05D005223 ORTHO05D006449 4.4e-06 58.2 52 55.8


User provided reference genes

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