Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0154421 Helianthus annuus HOM05D007920 ORTHO05D009993 4.3e-59 231.1 115 100.0
HanXRQChr09g0274501 Helianthus annuus HOM05D007920 ORTHO05D009993 3.9e-52 208.0 115 92.2
Lsat_1_v5_gn_4_87000 Lactuca sativa HOM05D007920 ORTHO05D009993 1.6e-37 159.5 116 71.6
Hma1.2p1_0109F.1_g052370 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 6.5e-31 137.5 116 62.1
Lj5C79G1 Lonicera japonica HOM05D007920 ORTHO05D009993 1.6e-29 132.9 115 59.1
ECA232G4957 Erigeron canadensis HOM05D007920 ORTHO05D009993 3.5e-29 131.7 115 59.1
Nitab4.5_0012943g0020 Nicotiana tabacum HOM05D007920 ORTHO05D009993 1.9e-27 125.9 107 59.8
Migut.D01101 Erythranthe guttata HOM05D007920 ORTHO05D009993 4.3e-27 124.8 94 68.1
Sopen03g035960 Solanum pennellii HOM05D007920 ORTHO05D009993 5.7e-27 124.4 115 55.7
Rhsim12G0188100 Rhododendron simsii HOM05D007920 ORTHO05D009993 2.1e-26 122.5 115 55.7
Nitab4.5_0001454g0110 Nicotiana tabacum HOM05D001080 ORTHO05D009993 3.7e-26 121.7 114 52.6
Actinidia36878 Actinidia chinensis HOM05D007920 ORTHO05D009993 1.8e-25 119.4 115 56.5
QL05p035351 Quercus lobata HOM05D007920 ORTHO05D009993 3.1e-25 118.6 100 59.0
PGSC0003DMG400014190 Solanum tuberosum HOM05D007920 ORTHO05D009993 6.9e-25 117.5 115 52.2
SalBow6G4591 Salvia bowleyana HOM05D007920 ORTHO05D009993 2.0e-24 115.9 94 62.8
SalBow6G6899 Salvia bowleyana HOM05D007920 ORTHO05D009993 2.0e-24 115.9 94 62.8
Oeu060125.1 Olea europaea HOM05D007920 ORTHO05D009993 3.4e-24 115.2 98 60.2
SGA_v2.0_scaffold117G32314 Striga asiatica HOM05D007920 ORTHO05D009993 5.9e-24 114.4 94 57.4
MSTRG.9407 Avicennia marina HOM05D007920 ORTHO05D009993 1.0e-23 113.6 94 61.7
Cc04_g04970 Coffea canephora HOM05D007920 ORTHO05D009993 2.9e-23 112.1 96 61.5
TAR383G1062 Trochodendron aralioides HOM05D007920 ORTHO05D009993 2.9e-23 112.1 115 51.3
Prupe.3G096700 Prunus persica HOM05D007920 ORTHO05D009993 3.8e-23 111.7 92 59.8
ClCG00G003920 Citrullus lanatus HOM05D007920 ORTHO05D009993 8.4e-23 110.5 101 61.4
ClCG07G012110 Citrullus lanatus HOM05D007920 ORTHO05D009993 1.4e-22 109.8 92 64.1
FAN09G3519 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.4e-22 109.8 92 59.8
Gorai.006G107000 Gossypium raimondii HOM05D007920 ORTHO05D009993 1.9e-22 109.4 97 57.7
MD17G1221700 Malus domestica HOM05D007920 ORTHO05D009993 1.9e-22 109.4 90 61.1
FvH4_6g28800 Fragaria vesca HOM05D007920 ORTHO05D009993 3.2e-22 108.6 92 59.8
FAN05G5030 Fragaria x ananassa HOM05D007920 ORTHO05D009993 3.2e-22 108.6 92 58.7
FAN02G0847 Fragaria x ananassa HOM05D007920 ORTHO05D009993 4.2e-22 108.2 92 58.7
MELO3C017832.2 Cucumis melo HOM05D007920 ORTHO05D009993 7.2e-22 107.5 90 62.2
Duzib192G0651 Durio zibethinus HOM05D007920 ORTHO05D009993 9.3e-22 107.1 95 54.7
RcHm_v2.0_Chr2g0133221 Rosa chinensis HOM05D007920 ORTHO05D009993 1.2e-21 106.7 100 54.0
Gohir.D09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 1.6e-21 106.3 97 56.7
CsaV3_4G002040 Cucumis sativus L. HOM05D001994 ORTHO05D001954 2.7e-21 105.5 90 61.1
Potri.001G046900 Populus trichocarpa HOM05D007920 ORTHO05D009993 3.5e-21 105.1 107 53.3
Gohir.A09G090800 Gossypium hirsutum HOM05D007920 ORTHO05D009993 4.6e-21 104.8 97 55.7
Psat5g304800 Pisum sativum HOM05D007920 ORTHO05D009993 6.1e-21 104.4 94 55.3
AT1G15900 Arabidopsis thaliana HOM05D007920 ORTHO05D009993 7.9e-21 104.0 91 60.4
ATR0559G078 Amborella trichopoda HOM05D007920 ORTHO05D009993 1.3e-20 103.2 95 57.9
Sabra01G0032500 Salix brachista HOM05D001994 ORTHO05D001954 1.3e-20 103.2 93 58.1
BraA06t24364Z Brassica rapa HOM05D000537 ORTHO05D000415 1.8e-20 102.8 91 57.1
CANSAT56G1317 Cannabis sativa HOM05D007920 ORTHO05D009993 1.8e-20 102.8 115 49.6
CARHR016410 Cardamine hirsuta HOM05D007920 ORTHO05D009993 1.8e-20 102.8 94 56.4
Aqoxy7G03460 Aquilegia oxysepala HOM05D007920 ORTHO05D009993 2.3e-20 102.4 116 50.0
PGR031G3888 Punica granatum HOM05D007920 ORTHO05D009993 3.0e-20 102.1 89 59.6
CSS0007854 Camellia sinensis var. sinensis HOM05D007920 ORTHO05D009993 3.9e-20 101.7 85 62.4
AL1G28072 Arabidopsis lyrata HOM05D007920 ORTHO05D009993 5.1e-20 101.3 94 54.3
CiPaw.01G253600 Carya illinoinensis HOM05D007920 ORTHO05D009993 5.1e-20 101.3 86 60.5
C05p14120 Brassica napus HOM05D000537 ORTHO05D000415 6.7e-20 100.9 91 57.1
BolC5t30143H Brassica oleracea HOM05D000537 ORTHO05D000415 6.7e-20 100.9 91 57.1
Nn8g39812 Nelumbo nucifera HOM05D007920 ORTHO05D009993 6.7e-20 100.9 92 55.4
A06p11940 Brassica napus HOM05D000537 ORTHO05D000415 8.7e-20 100.5 91 56.0
Medtr2g104930 Medicago truncatula HOM05D007920 ORTHO05D009993 8.7e-20 100.5 94 54.3
Thecc.06G039600 Theobroma cacao HOM05D007920 ORTHO05D009993 8.7e-20 100.5 91 56.0
SHI00232 Sapria himalayana HOM05D007920 ORTHO05D009993 1.9e-19 99.4 95 55.8
TWI12G0021 Tripterygium wilfordii HOM05D007920 ORTHO05D009993 1.9e-19 99.4 88 59.1
Carub.0001s1570 Capsella rubella HOM05D007920 ORTHO05D009993 2.5e-19 99.0 91 54.9
Cfa000225 Carpinus fangiana HOM05D007920 ORTHO05D009993 2.5e-19 99.0 84 59.5
Ciclev10026801m.g Citrus clementina HOM05D007920 ORTHO05D009993 2.5e-19 99.0 89 56.2
Ca_01022_v3 Cicer arietinum L. HOM05D007920 ORTHO05D009993 3.3e-19 98.6 98 54.1
Cpa.g.sc10.92 Carica papaya HOM05D007920 ORTHO05D009993 4.3e-19 98.2 89 56.2
Sp1g14205 Schrenkiella parvula HOM05D007920 ORTHO05D009993 4.3e-19 98.2 91 56.0
Sed0007883 Sechium edule HOM05D001994 ORTHO05D001954 4.3e-19 98.2 106 49.1
Manes.11G065050 Manihot esculenta HOM05D007920 ORTHO05D009993 7.4e-19 97.4 88 55.7
Thhalv10009838m.g Eutrema salsugineum HOM05D007920 ORTHO05D009993 9.7e-19 97.1 89 56.2
Lalb_Chr24g0395321 Lupinus albus HOM05D007920 ORTHO05D009993 9.7e-19 97.1 93 54.8
unitig_736.g22804 Utricularia gibba HOM05D000537 ORTHO05D000776 1.6e-18 96.3 98 50.0
Lj3g0004979 Lotus japonicus HOM05D007920 ORTHO05D009993 2.2e-18 95.9 100 50.0
Aa31LG7G480 Aethionema arabicum HOM05D007920 ORTHO05D009993 3.7e-18 95.1 89 56.2
THA.LOC104808181 Tarenaya hassleriana HOM05D007920 ORTHO05D009993 3.7e-18 95.1 89 56.2
Sc12g0008420 Simmondsia chinensis HOM05D007920 ORTHO05D009993 1.8e-17 92.8 102 48.0
Lalb_Chr14g0374051 Lupinus albus HOM05D007920 ORTHO05D009993 4.1e-17 91.7 93 52.7
Glyma.15G004000 Glycine max HOM05D007920 ORTHO05D009993 6.9e-17 90.9 91 53.8
Mapoly0046s0029 Marchantia polymorpha HOM05D007920 ORTHO05D009993 6.9e-17 90.9 93 54.8
HPP92_000037 Vanilla planifolia HOM05D001122 ORTHO05D001877 1.2e-16 90.1 92 50.0
FAN14G5942 Fragaria x ananassa HOM05D007920 ORTHO05D009993 1.5e-16 89.7 93 51.6
VMungo1080G1626 Vigna mungo HOM05D007920 ORTHO05D009993 4.5e-16 88.2 119 47.1
Phvul.005G182500 Phaseolus vulgaris HOM05D007920 ORTHO05D009993 2.2e-15 85.9 111 45.9
arahy.Tifrunner.gnm1.ann1.D8WECR Arachis hypogaea HOM05D007920 ORTHO05D009993 8.5e-15 84.0 90 47.8
TPR.G36324 Trifolium pratense HOM05D007920 ORTHO05D009993 1.4e-14 83.2 87 52.9
SEGI_11378 Sequoiadendron giganteum HOM05D007920 ORTHO05D009993 2.5e-14 82.4 88 50.0
Zm00001eb278260 Zea mays HOM05D007920 ORTHO05D009993 4.2e-14 81.6 86 51.2
Lsat_1_v5_gn_2_132940 Lactuca sativa HOM05D007920 ORTHO05D009993 1.2e-13 80.1 90 54.4
COL.COLO4_26676 Corchorus olitorius HOM05D007920 ORTHO05D009993 1.0e-12 77.0 64 65.6
Sc02g0006940 Simmondsia chinensis HOM05D007920 ORTHO05D009993 2.3e-12 75.9 89 44.9
Ah.01g006840 Amaranthus hybridus HOM05D007920 ORTHO05D009993 1.1e-11 73.6 104 42.3
MD16G1196200 Malus domestica HOM05D007920 ORTHO05D009993 2.0e-08 62.8 60 53.3
Hma1.2p1_0586F.1_g183770 Hydrangea macrophylla HOM05D007920 ORTHO05D009993 5.5e-06 54.7 74 44.6


User provided reference genes

Program Settings