Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 2.1e-38 161.8 77 100.0
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 6.2e-30 133.7 77 83.1
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 1.6e-25 119.0 70 75.7
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 4.6e-25 117.5 72 76.4
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 7.9e-25 116.7 69 76.8
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 1.3e-24 115.9 74 70.3
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 2.3e-24 115.2 70 74.3
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 3.0e-24 114.8 69 71.0
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 3.9e-24 114.4 68 72.1
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 6.7e-24 113.6 69 69.6
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 1.1e-23 112.8 70 71.4
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 1.9e-23 112.1 70 70.0
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 1.9e-23 112.1 66 74.2
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.3e-23 111.3 70 72.9
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 3.3e-23 111.3 66 74.2
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 4.3e-23 110.9 66 74.2
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 5.7e-23 110.5 70 71.4
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 9.6e-23 109.8 69 71.0
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 1.3e-22 109.4 63 76.2
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.3e-22 109.4 62 77.4
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.6e-22 109.0 76 64.5
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 2.1e-22 108.6 70 70.0
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 2.1e-22 108.6 70 70.0
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 2.8e-22 108.2 72 68.1
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 3.7e-22 107.8 68 73.5
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 6.3e-22 107.1 69 68.1
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 6.3e-22 107.1 75 64.0
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 6.3e-22 107.1 69 69.6
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 6.3e-22 107.1 69 66.7
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 8.2e-22 106.7 76 65.8
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 8.2e-22 106.7 76 61.8
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 8.2e-22 106.7 70 68.6
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 8.2e-22 106.7 65 70.8
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 8.2e-22 106.7 65 70.8
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 8.2e-22 106.7 70 68.6
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 1.1e-21 106.3 76 60.5
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 1.1e-21 106.3 76 61.8
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 1.1e-21 106.3 61 75.4
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 1.4e-21 105.9 69 65.2
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 1.4e-21 105.9 60 78.3
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 1.4e-21 105.9 70 61.4
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.8e-21 105.5 69 65.2
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 1.8e-21 105.5 69 65.2
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 2.4e-21 105.1 79 65.8
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 3.1e-21 104.8 76 60.5
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 3.1e-21 104.8 63 71.4
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 3.1e-21 104.8 76 60.5
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 3.1e-21 104.8 72 62.5
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 4.1e-21 104.4 61 73.8
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 5.3e-21 104.0 76 61.8
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 5.3e-21 104.0 73 64.4
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 6.9e-21 103.6 68 67.6
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 6.9e-21 103.6 73 64.4
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 6.9e-21 103.6 68 66.2
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 9.0e-21 103.2 67 70.1
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 9.0e-21 103.2 69 68.1
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 1.5e-20 102.4 68 66.2
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 3.4e-20 101.3 71 62.0
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 5.9e-20 100.5 76 57.9
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 5.9e-20 100.5 64 65.6
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 7.6e-20 100.1 78 57.7
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 1.7e-19 99.0 70 64.3
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 2.2e-19 98.6 70 60.0
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 3.8e-19 97.8 75 56.0
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 3.8e-19 97.8 70 60.0
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 1.1e-18 96.3 72 55.6
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 1.4e-18 95.9 63 63.5
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.2e-18 94.7 54 72.2
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 4.2e-18 94.4 63 63.5
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 1.2e-17 92.8 86 53.5
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 2.7e-17 91.7 54 72.2
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 6.1e-17 90.5 50 78.0
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 3.0e-16 88.2 40 97.5
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 5.1e-16 87.4 46 78.3
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 5.1e-16 87.4 46 78.3
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 5.1e-16 87.4 46 78.3
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 8.7e-16 86.7 48 72.9
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.5e-15 85.9 54 64.8
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.9e-15 85.5 54 64.8
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.9e-15 85.5 47 74.5
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 1.9e-15 85.5 76 59.2
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 2.5e-15 85.1 48 70.8
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.5e-15 85.1 48 70.8
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 3.3e-15 84.7 69 56.5
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 4.3e-15 84.3 45 77.8
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 4.3e-15 84.3 45 77.8
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 7.4e-15 83.6 50 70.0
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 9.7e-15 83.2 74 52.7
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 9.7e-15 83.2 104 42.3
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 9.7e-15 83.2 45 77.8
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 1.6e-14 82.4 50 70.0
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 2.2e-14 82.0 50 72.0
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 2.8e-14 81.6 50 68.0
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 2.8e-14 81.6 75 53.3
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 3.7e-14 81.3 48 77.1
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 4.8e-14 80.9 48 70.8
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 6.3e-14 80.5 45 73.3
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 8.2e-14 80.1 66 59.1
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 8.2e-14 80.1 51 66.7
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.1e-13 79.7 53 67.9
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.4e-13 79.3 50 64.0
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 1.8e-13 79.0 43 76.7
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 1.8e-13 79.0 43 76.7
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 1.8e-13 79.0 43 76.7
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 2.4e-13 78.6 46 65.2
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 4.1e-13 77.8 41 82.9
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 6.9e-13 77.0 42 78.6
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 9.1e-13 76.6 49 65.3
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 2.6e-12 75.1 66 50.0
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 3.4e-12 74.7 45 68.9
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 4.5e-12 74.3 41 75.6
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 3.8e-11 71.2 47 61.7
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 3.8e-11 71.2 77 42.9
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 8.5e-11 70.1 66 47.0
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 1.1e-10 69.7 55 52.7
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 1.4e-10 69.3 44 65.9
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 2.5e-10 68.6 48 60.4
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 4.2e-10 67.8 40 72.5
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 7.2e-10 67.0 40 67.5
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 7.2e-10 67.0 44 65.9
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 9.4e-10 66.6 63 44.4
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 1.2e-09 66.2 39 69.2
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.1e-09 65.5 51 49.0
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 6.1e-09 63.9 44 59.1
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 1.0e-08 63.2 39 59.0
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 5.1e-08 60.8 97 38.1
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 5.1e-08 60.8 38 60.5
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 7.4e-07 57.0 58 44.8
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.3e-06 56.2 51 49.0


User provided reference genes

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