Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 7.5e-189 663.7 332 100.0
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 5.6e-152 541.2 335 80.0
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 1.7e-108 396.7 257 76.3
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 3.3e-96 355.9 347 56.5
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 9.4e-91 337.8 349 54.7
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 1.4e-89 334.0 349 55.6
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 5.2e-89 332.0 317 55.5
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 1.1e-88 330.9 332 55.1
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 1.5e-88 330.5 340 54.4
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.0e-88 330.1 296 61.5
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 4.8e-87 325.5 269 64.3
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 9.1e-86 321.2 349 54.7
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 1.6e-85 320.5 340 56.2
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 2.6e-85 319.7 331 55.6
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 3.5e-85 319.3 296 58.4
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 4.5e-85 318.9 218 72.9
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 5.9e-85 318.5 313 55.9
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 7.7e-85 318.2 256 66.0
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.0e-84 317.8 336 53.3
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 1.0e-84 317.8 340 52.9
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 1.7e-84 317.0 340 55.3
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 3.8e-84 315.8 368 50.3
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 2.5e-83 313.2 340 54.1
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 3.2e-83 312.8 217 70.5
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.5e-83 312.0 340 53.8
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 7.2e-83 311.6 349 51.6
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.2e-82 310.8 233 67.8
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.6e-82 310.5 292 57.9
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 2.1e-82 310.1 315 56.2
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 2.1e-82 310.1 315 56.2
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 3.6e-82 309.3 340 50.0
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 3.6e-82 309.3 260 60.0
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 4.7e-82 308.9 312 53.8
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 4.7e-82 308.9 315 55.2
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 6.1e-82 308.5 316 53.2
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 8.0e-82 308.1 310 54.5
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 1.4e-81 307.4 374 51.3
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 1.8e-81 307.0 342 49.7
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 1.8e-81 307.0 302 57.0
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.2e-80 304.3 308 55.2
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.2e-80 304.3 308 55.2
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 1.2e-80 304.3 349 51.0
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 3.3e-80 302.8 327 51.7
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 4.4e-80 302.4 314 53.2
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 4.4e-80 302.4 259 58.3
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 7.5e-80 301.6 306 54.6
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 7.5e-80 301.6 253 62.5
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 2.2e-79 300.1 359 49.9
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 1.1e-78 297.7 334 50.0
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 3.1e-78 296.2 351 52.4
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 5.3e-78 295.4 304 54.6
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 2.7e-77 293.1 263 58.6
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 4.5e-77 292.4 332 50.9
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 4.5e-77 292.4 347 51.9
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 5.9e-77 292.0 327 50.2
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 2.2e-76 290.0 348 50.3
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 5.0e-76 288.9 345 50.4
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 5.0e-76 288.9 235 60.9
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 6.5e-76 288.5 341 49.0
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 1.5e-75 287.3 330 50.3
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 4.2e-75 285.8 347 48.4
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 9.4e-75 284.6 260 60.8
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 8.0e-74 281.6 293 53.9
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 2.3e-73 280.0 331 48.6
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 4.0e-73 279.3 324 50.6
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 4.0e-73 279.3 324 50.6
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 5.2e-73 278.9 209 67.0
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 8.8e-73 278.1 328 51.5
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 2.0e-72 276.9 354 46.9
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 5.7e-72 275.4 335 49.0
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 2.8e-71 273.1 234 61.1
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 6.3e-71 271.9 348 48.6
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 4.1e-70 269.2 336 47.9
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 2.0e-69 266.9 254 53.5
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 3.5e-69 266.2 224 60.7
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 4.5e-69 265.8 333 45.9
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 4.5e-69 265.8 351 45.6
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 2.3e-68 263.5 217 60.4
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 5.0e-68 262.3 218 61.5
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.1e-67 261.2 210 61.4
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 7.2e-67 258.5 186 71.5
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 1.8e-65 253.8 353 45.9
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 5.4e-62 242.3 266 52.3
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 5.9e-61 238.8 230 51.3
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 5.9e-61 238.8 203 58.6
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 5.9e-61 238.8 215 58.6
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 2.3e-60 236.9 339 44.5
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.9e-59 233.8 341 44.0
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 2.5e-59 233.4 216 58.3
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 9.5e-59 231.5 201 60.7
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 1.2e-58 231.1 201 60.7
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.4e-56 222.6 266 48.1
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 9.8e-56 221.5 337 40.7
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.4e-55 218.8 337 42.1
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.1e-54 218.0 336 40.8
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 2.7e-53 213.4 299 41.8
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.6e-53 212.6 336 42.6
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 6.0e-53 212.2 207 57.0
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 1.9e-51 207.2 254 44.9
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 4.7e-50 202.6 197 53.8
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 3.7e-47 193.0 222 48.2
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 2.4e-46 190.3 132 74.2
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 1.2e-45 188.0 172 58.1
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.6e-45 186.0 266 43.2
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.7e-44 184.1 224 49.6
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.7e-44 184.1 128 72.7
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.6e-44 182.2 231 45.5
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.5e-43 181.0 168 57.1
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 4.3e-43 179.5 197 46.7
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 2.8e-42 176.8 188 47.9
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 8.1e-42 175.3 258 40.3
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 1.8e-41 174.1 263 42.6
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.3e-41 173.7 137 63.5
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 2.9e-39 166.8 362 36.7
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 1.1e-38 164.9 218 43.1
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 1.9e-38 164.1 218 43.1
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 2.4e-38 163.7 171 56.1
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 3.2e-38 163.3 220 45.5
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 5.4e-38 162.5 246 41.9
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 1.6e-37 161.0 197 46.7
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.1e-37 160.6 225 44.9
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 1.0e-36 158.3 244 38.9
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 4.7e-34 149.4 209 41.6
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 8.1e-34 148.7 328 36.9
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 5.2e-33 146.0 208 41.3
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 6.8e-33 145.6 146 54.8
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 1.5e-32 144.4 237 37.6
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 7.6e-32 142.1 103 68.9
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 2.2e-31 140.6 209 41.1
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 2.2e-31 140.6 121 60.3
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 2.9e-31 140.2 211 45.0
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 4.2e-30 136.3 225 39.1
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 4.6e-29 132.9 217 39.2
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 2.3e-28 130.6 266 36.8
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 6.6e-28 129.0 201 39.8
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 8.7e-28 128.6 93 67.7
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 4.7e-26 122.9 114 55.3
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 6.2e-26 122.5 76 78.9
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 6.2e-26 122.5 205 38.5
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 9.9e-24 115.2 74 74.3
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 5.6e-19 99.4 70 62.9
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 2.8e-18 97.1 175 40.0
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-17 93.6 148 33.8
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 4.0e-17 93.2 87 59.8
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 1.2e-16 91.7 89 58.4
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 6.7e-12 75.9 100 43.0
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.5e-08 64.7 43 72.1


User provided reference genes

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