Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
HanXRQChr05g0152181 Helianthus annuus HOM05D003291 ORTHO05D003923 3.5e-160 568.2 275 100.0
HanXRQChr09g0267981 Helianthus annuus HOM05D003291 ORTHO05D003923 2.2e-130 469.2 231 96.5
Lsat_1_v5_gn_4_124081 Lactuca sativa HOM05D003291 ORTHO05D003923 3.5e-107 392.1 231 81.0
HanXRQChr16g0507451 Helianthus annuus HOM05D003291 ORTHO05D003923 5.9e-107 391.3 231 80.5
Dinv35983 Davidia involucrata HOM05D003291 ORTHO05D003923 2.3e-106 389.4 233 78.1
Dinv08769 Davidia involucrata HOM05D003291 ORTHO05D003923 1.1e-105 387.1 233 77.3
ECA232G2639 Erigeron canadensis HOM05D003291 ORTHO05D003923 3.3e-105 385.6 231 78.8
Lsat_1_v5_gn_6_113580 Lactuca sativa HOM05D003291 ORTHO05D003923 1.0e-103 380.6 231 78.8
Lj4C776G1 Lonicera japonica HOM05D003291 ORTHO05D003923 1.0e-103 380.6 233 76.8
Hma1.2p1_0337F.1_g129290 Hydrangea macrophylla HOM05D003291 ORTHO05D003923 1.8e-103 379.8 233 76.0
EL10Ac1g01777 Beta vulgaris HOM05D003291 ORTHO05D003923 8.9e-103 377.5 233 77.7
DCAR_028414 Daucus carota HOM05D003291 ORTHO05D003923 8.9e-103 377.5 233 75.5
HanXRQChr10g0304011 Helianthus annuus HOM05D003291 ORTHO05D003923 2.6e-102 375.9 231 77.5
Sabra14G0024400 Salix brachista HOM05D003291 ORTHO05D003923 2.6e-102 375.9 233 75.5
Duzib093G1598 Durio zibethinus HOM05D003291 ORTHO05D003923 4.4e-102 375.2 233 76.4
Actinidia15259 Actinidia chinensis HOM05D003291 ORTHO05D003923 5.7e-102 374.8 233 75.5
Oeu009557.1 Olea europaea HOM05D003291 ORTHO05D003923 5.7e-102 374.8 233 75.5
Oeu006153.2 Olea europaea HOM05D003291 ORTHO05D003923 7.5e-102 374.4 233 75.5
ECA246G0633 Erigeron canadensis HOM05D003291 ORTHO05D003923 1.3e-101 373.6 231 77.1
DCAR_023940 Daucus carota HOM05D003291 ORTHO05D003923 1.7e-101 373.2 233 75.5
Lj4A52T42 Lonicera japonica HOM05D003291 ORTHO05D003923 1.7e-101 373.2 233 74.7
MD15G1086800 Malus domestica HOM05D003291 ORTHO05D003923 1.7e-101 373.2 233 75.5
CSS0046933 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 2.9e-101 372.5 230 76.1
AUR62039319 Chenopodium quinoa HOM05D003291 ORTHO05D003923 2.9e-101 372.5 233 76.8
Cpa.g.sc1124.3 Carica papaya HOM05D003291 ORTHO05D003923 3.7e-101 372.1 233 76.0
Gohir.D05G203800 Gossypium hirsutum HOM05D003291 ORTHO05D003923 3.7e-101 372.1 233 74.7
Thecc.08G012800 Theobroma cacao HOM05D003291 ORTHO05D003923 4.9e-101 371.7 233 76.0
Gorai.009G209900 Gossypium raimondii HOM05D003291 ORTHO05D003923 6.3e-101 371.3 233 74.7
MSTRG.1333 Avicennia marina HOM05D003291 ORTHO05D003923 8.3e-101 370.9 233 75.1
Eucgr.F02708 Eucalyptus grandis HOM05D003291 ORTHO05D003923 1.1e-100 370.5 230 77.4
AUR62022448 Chenopodium quinoa HOM05D003291 ORTHO05D003923 1.4e-100 370.2 233 76.0
HanXRQChr02g0056101 Helianthus annuus HOM05D003291 ORTHO05D003923 1.4e-100 370.2 231 77.1
Migut.C00602 Erythranthe guttata HOM05D003291 ORTHO05D003923 1.8e-100 369.8 233 75.1
RcHm_v2.0_Chr6g0307181 Rosa chinensis HOM05D003291 ORTHO05D003923 1.8e-100 369.8 233 76.0
Gohir.A05G200600 Gossypium hirsutum HOM05D003291 ORTHO05D003923 2.4e-100 369.4 233 74.7
Potri.014G034400 Populus trichocarpa HOM05D003291 ORTHO05D003923 2.4e-100 369.4 233 74.7
Cc10_g04020 Coffea canephora HOM05D003291 ORTHO05D003923 3.2e-100 369.0 233 74.2
GSVIVG01009556001 Vitis vinifera HOM05D003291 ORTHO05D003923 3.2e-100 369.0 233 75.1
COL.COLO4_26461 Corchorus olitorius HOM05D003291 ORTHO05D003923 4.1e-100 368.6 233 75.1
MD00G1187500 Malus domestica HOM05D003291 ORTHO05D003923 4.1e-100 368.6 233 74.7
MD08G1106200 Malus domestica HOM05D003291 ORTHO05D003923 4.1e-100 368.6 233 74.7
CSS0020917 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 5.4e-100 368.2 234 73.5
Ciclev10000140m.g Citrus clementina HOM05D003291 ORTHO05D003923 5.4e-100 368.2 230 74.3
Gohir.A06G016600 Gossypium hirsutum HOM05D003291 ORTHO05D003923 7.0e-100 367.9 233 73.8
Solyc12g088920.2 Solanum lycopersicum HOM05D003291 ORTHO05D003923 7.0e-100 367.9 233 74.2
Sopen12g030820 Solanum pennellii HOM05D003291 ORTHO05D003923 7.0e-100 367.9 233 74.2
CAN.G1422.3 Capsicum annuum HOM05D003291 ORTHO05D003923 9.2e-100 367.5 233 73.4
Manes.05G171000 Manihot esculenta HOM05D003291 ORTHO05D003923 1.2e-99 367.1 233 74.2
Rhsim06G0046900 Rhododendron simsii HOM05D003291 ORTHO05D003923 1.6e-99 366.7 233 73.8
CiPaw.16G047600 Carya illinoinensis HOM05D003291 ORTHO05D003923 2.0e-99 366.3 233 74.7
QL02p005806 Quercus lobata HOM05D003291 ORTHO05D003923 2.0e-99 366.3 233 73.4
CSS0029839 Camellia sinensis var. sinensis HOM05D003291 ORTHO05D003923 2.7e-99 365.9 233 73.4
Gorai.010G017500 Gossypium raimondii HOM05D003291 ORTHO05D003923 2.7e-99 365.9 233 73.8
Nitab4.5_0011844g0020 Nicotiana tabacum HOM05D003291 ORTHO05D003923 2.7e-99 365.9 233 73.8
vmacro21555 Vaccinium macrocarpon HOM05D003291 ORTHO05D003923 3.5e-99 365.5 234 71.4
Gohir.D06G014700 Gossypium hirsutum HOM05D003291 ORTHO05D003923 7.8e-99 364.4 233 73.4
SalBow6G6854 Salvia bowleyana HOM05D003291 ORTHO05D003923 7.8e-99 364.4 233 75.1
Ah.05g168860 Amaranthus hybridus HOM05D003291 ORTHO05D003923 1.0e-98 364.0 233 75.1
CANSAT25G2224 Cannabis sativa HOM05D003291 ORTHO05D003923 1.0e-98 364.0 233 73.8
Lj5g0021120 Lotus japonicus HOM05D003291 ORTHO05D003923 1.0e-98 364.0 233 73.8
Sc02g0006960 Simmondsia chinensis HOM05D003291 ORTHO05D003923 1.0e-98 364.0 233 75.1
TAR625G0168 Trochodendron aralioides HOM05D003291 ORTHO05D003923 1.0e-98 364.0 229 74.2
Cfa018512 Carpinus fangiana HOM05D003291 ORTHO05D003923 1.3e-98 363.6 233 73.0
PGSC0003DMG400008030 Solanum tuberosum HOM05D003291 ORTHO05D003923 1.3e-98 363.6 233 73.8
Peaxi162Scf00528g00823 Petunia axillaris HOM05D003291 ORTHO05D003923 2.3e-98 362.8 233 73.4
PGR031G1546 Punica granatum HOM05D003291 ORTHO05D003923 3.9e-98 362.1 230 76.1
SalBow4G1770 Salvia bowleyana HOM05D003291 ORTHO05D003923 3.9e-98 362.1 239 72.4
Actinidia38048 Actinidia chinensis HOM05D003291 ORTHO05D003923 5.0e-98 361.7 233 73.8
Sed0000864 Sechium edule HOM05D003291 ORTHO05D003923 5.0e-98 361.7 233 73.4
Sopen04g032890 Solanum pennellii HOM05D003291 ORTHO05D003923 5.0e-98 361.7 233 73.4
SGA_v2.0_scaffold208G42005 Striga asiatica HOM05D003291 ORTHO05D003923 5.0e-98 361.7 233 73.8
THA.LOC104813013 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 5.0e-98 361.7 233 73.4
Atru.chr13.635 Acer truncatum HOM05D003291 ORTHO05D003923 6.6e-98 361.3 230 73.9
Phvul.001G019800 Phaseolus vulgaris HOM05D003291 ORTHO05D003923 8.6e-98 360.9 233 73.4
CAN.G371.46 Capsicum annuum HOM05D003291 ORTHO05D003923 1.1e-97 360.5 233 73.0
Glyma.17G244600 Glycine max HOM05D003291 ORTHO05D003923 1.1e-97 360.5 233 73.8
AT4G23000 Arabidopsis thaliana HOM05D003291 ORTHO05D003923 1.5e-97 360.1 233 73.0
CsaV3_2G028120 Cucumis sativus L. HOM05D003291 ORTHO05D003923 1.5e-97 360.1 233 73.4
FvH4_2g34860 Fragaria vesca HOM05D003291 ORTHO05D003923 1.5e-97 360.1 233 73.8
Prupe.1G440500 Prunus persica HOM05D003291 ORTHO05D003923 1.5e-97 360.1 233 73.4
TAR381G0638 Trochodendron aralioides HOM05D003291 ORTHO05D003923 1.5e-97 360.1 233 72.5
MELO3C010890.2 Cucumis melo HOM05D003291 ORTHO05D003923 1.9e-97 359.8 233 73.4
Glyma.14G080800 Glycine max HOM05D003291 ORTHO05D003923 1.9e-97 359.8 233 74.2
Nn1g05846 Nelumbo nucifera HOM05D003291 ORTHO05D003923 1.9e-97 359.8 233 73.4
VMungo0647G0987 Vigna mungo HOM05D003291 ORTHO05D003923 2.5e-97 359.4 233 73.0
A02p25980 Brassica napus HOM05D003291 ORTHO05D003923 3.3e-97 359.0 233 71.7
BraA02t07596Z Brassica rapa HOM05D003291 ORTHO05D003923 3.3e-97 359.0 233 71.7
unitig_26.g9818 Utricularia gibba HOM05D003291 ORTHO05D003923 4.3e-97 358.6 233 73.4
BcaB05g23806 Brassica carinata HOM05D003291 ORTHO05D003923 5.6e-97 358.2 233 71.2
Carub.0006s3091 Capsella rubella HOM05D003291 ORTHO05D003923 9.5e-97 357.5 233 71.7
CARHR230060 Cardamine hirsuta HOM05D003291 ORTHO05D003923 9.5e-97 357.5 233 72.5
THA.LOC104814278 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 9.5e-97 357.5 233 72.5
AL7G30520 Arabidopsis lyrata HOM05D003291 ORTHO05D003923 1.2e-96 357.1 233 72.5
SalBow6G1638 Salvia bowleyana HOM05D003291 ORTHO05D003923 1.2e-96 357.1 241 72.6
Aqoxy6G01378 Aquilegia oxysepala HOM05D003291 ORTHO05D003923 1.6e-96 356.7 233 73.0
BcaC03g16327 Brassica carinata HOM05D003291 ORTHO05D003923 1.6e-96 356.7 233 70.8
C02p41460 Brassica napus HOM05D003291 ORTHO05D003923 1.6e-96 356.7 233 70.8
BolC2t10163H Brassica oleracea HOM05D003291 ORTHO05D003923 1.6e-96 356.7 233 70.8
SHI08307 Sapria himalayana HOM05D003291 ORTHO05D003923 1.6e-96 356.7 233 73.0
Solyc04g079300.3 Solanum lycopersicum HOM05D003291 ORTHO05D003923 1.6e-96 356.7 233 72.5
Thhalv10028387m.g Eutrema salsugineum HOM05D003291 ORTHO05D003923 2.1e-96 356.3 233 71.7
FAN20G0796 Fragaria x ananassa HOM05D003291 ORTHO05D003923 2.1e-96 356.3 226 74.8
Nitab4.5_0000453g0160 Nicotiana tabacum HOM05D003291 ORTHO05D003923 2.1e-96 356.3 233 72.5
Peaxi162Scf00064g00220 Petunia axillaris HOM05D003291 ORTHO05D003923 2.1e-96 356.3 233 71.2
FAN27G0136 Fragaria x ananassa HOM05D003291 ORTHO05D003923 2.8e-96 355.9 226 74.8
PSO210G0952 Papaver somniferum HOM05D003291 ORTHO05D003923 2.8e-96 355.9 231 74.0
BraA09t38297Z Brassica rapa HOM05D003291 ORTHO05D003923 3.6e-96 355.5 233 71.7
FAN15G0927 Fragaria x ananassa HOM05D003291 ORTHO05D003923 3.6e-96 355.5 226 74.8
MBI03_g42553_MAGBIO Magnolia biondii HOM05D003291 ORTHO05D003923 3.6e-96 355.5 233 73.4
Nn5g30207 Nelumbo nucifera HOM05D003291 ORTHO05D003923 3.6e-96 355.5 233 73.4
PSO170G2235 Papaver somniferum HOM05D003291 ORTHO05D003923 3.6e-96 355.5 231 73.6
Sp6g05650 Schrenkiella parvula HOM05D003291 ORTHO05D003923 3.6e-96 355.5 233 71.7
AL6G46510 Arabidopsis lyrata HOM05D003291 ORTHO05D003923 4.7e-96 355.1 233 71.2
AT4G11800 Arabidopsis thaliana HOM05D003291 ORTHO05D003923 4.7e-96 355.1 233 71.2
BolC7t45726H Brassica oleracea HOM05D003291 ORTHO05D003923 6.1e-96 354.8 233 71.2
ATR0709G069 Amborella trichopoda HOM05D003291 ORTHO05D003923 8.0e-96 354.4 233 72.5
C09p34640 Brassica napus HOM05D003291 ORTHO05D003923 8.0e-96 354.4 233 71.7
BolC9t56309H Brassica oleracea HOM05D003291 ORTHO05D003923 8.0e-96 354.4 233 71.7
Duzib116G0711 Durio zibethinus HOM05D003291 ORTHO05D003923 8.0e-96 354.4 233 73.0
A03p53920 Brassica napus HOM05D003291 ORTHO05D003923 1.0e-95 354.0 233 70.8
C07p52330 Brassica napus HOM05D003291 ORTHO05D003923 1.0e-95 354.0 233 71.2
THA.LOC104806367 Tarenaya hassleriana HOM05D003291 ORTHO05D003923 1.0e-95 354.0 233 72.1
A09p27310 Brassica napus HOM05D003291 ORTHO05D003923 1.4e-95 353.6 233 71.2
BraA03t14461Z Brassica rapa HOM05D003291 ORTHO05D003923 1.4e-95 353.6 233 70.8
Lalb_Chr22g0355231 Lupinus albus HOM05D003291 ORTHO05D003923 1.4e-95 353.6 233 74.2
BcaB01g01679 Brassica carinata HOM05D003291 ORTHO05D003923 1.8e-95 353.2 233 71.2
TWI56G0991 Tripterygium wilfordii HOM05D003291 ORTHO05D003923 1.8e-95 353.2 234 72.6
Haze_17564 Corylus avellana HOM05D003291 ORTHO05D003923 2.3e-95 352.8 267 65.2
Carub.0007s1827 Capsella rubella HOM05D003291 ORTHO05D003923 4.0e-95 352.1 233 71.2
Lalb_Chr14g0368841 Lupinus albus HOM05D003291 ORTHO05D003923 5.2e-95 351.7 233 74.7
TPR.G13691 Trifolium pratense HOM05D003291 ORTHO05D003923 5.2e-95 351.7 233 73.8
CARHR254510 Cardamine hirsuta HOM05D003291 ORTHO05D003923 6.8e-95 351.3 233 71.2
Sp7g21090 Schrenkiella parvula HOM05D003291 ORTHO05D003923 6.8e-95 351.3 233 70.4
arahy.Tifrunner.gnm1.ann1.H8JSRB Arachis hypogaea HOM05D003291 ORTHO05D003923 8.9e-95 350.9 233 72.1
arahy.Tifrunner.gnm1.ann1.NP9S9N Arachis hypogaea HOM05D003291 ORTHO05D003923 8.9e-95 350.9 233 72.1
Sc02g0006950 Simmondsia chinensis HOM05D003291 ORTHO05D003923 2.0e-94 349.7 238 71.8
ClCG08G015660 Citrullus lanatus HOM05D003291 ORTHO05D003923 2.6e-94 349.4 236 71.2
Thhalv10024304m.g Eutrema salsugineum HOM05D003291 ORTHO05D003923 5.8e-94 348.2 233 70.4
Aqoxy5G01279 Aquilegia oxysepala HOM05D003291 ORTHO05D003923 7.5e-94 347.8 230 71.7
HanXRQChr09g0267941 Helianthus annuus HOM05D003291 ORTHO05D003923 1.7e-93 346.7 231 71.9
Psat6g012080 Pisum sativum HOM05D003291 ORTHO05D003923 1.7e-93 346.7 233 72.1
CDE03G0102 Ceratophyllum demersum HOM05D003291 ORTHO05D003923 2.2e-93 346.3 233 71.7
Os07g0106000 Oryza sativa ssp. japonica HOM05D003291 ORTHO05D003923 8.3e-93 344.4 233 70.0
Ca_13307_v3 Cicer arietinum L. HOM05D003291 ORTHO05D003923 1.4e-92 343.6 233 73.0
Medtr1g020000 Medicago truncatula HOM05D003291 ORTHO05D003923 1.9e-92 343.2 233 71.7
Zm00001eb298290 Zea mays HOM05D003291 ORTHO05D003923 1.9e-92 343.2 233 69.5
Nitab4.5_0005301g0010 Nicotiana tabacum HOM05D003291 ORTHO05D003923 2.4e-92 342.8 278 61.2
HPP92_016679 Vanilla planifolia HOM05D003291 ORTHO05D003923 2.0e-91 339.7 233 70.0
Zm00001eb096290 Zea mays HOM05D003291 ORTHO05D003923 7.8e-91 337.8 230 67.8
Aa31LG9G10630 Aethionema arabicum HOM05D003291 ORTHO05D003923 1.5e-86 323.6 233 66.5
SEGI_30325 Sequoiadendron giganteum HOM05D003291 ORTHO05D003923 3.4e-86 322.4 231 66.7
Mapoly0020s0063 Marchantia polymorpha HOM05D003291 ORTHO05D003923 7.5e-86 321.2 237 64.1
AagrBONN_evm.TU.Sc2ySwM_368.1909 Anthoceros agrestis HOM05D003291 ORTHO05D003923 9.8e-86 320.9 236 64.8
Pp3c5_1910 Physcomitrium patens HOM05D003291 ORTHO05D003923 6.6e-82 308.1 229 65.1
Hma1.2p1_0260F.1_g104760 Hydrangea macrophylla HOM05D003291 ORTHO05D003923 2.5e-81 306.2 200 72.0
SMO358G0100 Selaginella moellendorffii HOM05D003291 ORTHO05D003923 2.3e-79 299.7 236 60.2
Hund17590 Selenicereus undatus HOM05D003291 ORTHO05D003923 2.3e-79 299.7 365 47.1
AagrBONN_evm.TU.Sc2ySwM_228.3178 Anthoceros agrestis HOM05D003291 ORTHO05D003923 4.4e-78 295.4 264 57.2
Pp3c1_37890 Physcomitrium patens HOM05D003291 ORTHO05D003923 2.2e-77 293.1 238 60.9
Eucgr.B02922 Eucalyptus grandis HOM05D003291 ORTHO05D003923 2.4e-76 289.7 180 77.2
Nitab4.5_0000068g0460 Nicotiana tabacum HOM05D003291 ORTHO05D003923 2.3e-74 283.1 233 60.1
Haze_17561 Corylus avellana HOM05D003291 ORTHO05D003923 4.7e-72 275.4 272 52.6
Eucgr.B02927 Eucalyptus grandis HOM05D003291 ORTHO05D003923 4.0e-71 272.3 265 54.0
Cfa018515 Carpinus fangiana HOM05D003291 ORTHO05D003923 1.4e-68 263.8 254 53.1
CBR_g767 Chara braunii HOM05D003291 ORTHO05D000048 1.4e-68 263.8 235 54.0
Oeu043547.1 Olea europaea HOM05D003291 ORTHO05D003923 2.4e-68 263.1 172 72.1
Actinidia27513 Actinidia chinensis HOM05D003291 ORTHO05D003923 6.0e-67 258.5 172 72.7
CiPaw.16G047500 Carya illinoinensis HOM05D003291 ORTHO05D003923 3.6e-64 249.2 249 51.4
unitig_578.g16531 Utricularia gibba HOM05D003291 ORTHO05D003923 6.2e-64 248.4 174 70.1
SGA_v2.0_scaffold458G51943 Striga asiatica HOM05D003291 ORTHO05D003923 6.9e-63 245.0 174 69.0
Haze_17560 Corylus avellana HOM05D003291 ORTHO05D003923 7.6e-62 241.5 230 54.3
CiPaw.16G049300 Carya illinoinensis HOM05D003291 ORTHO05D003923 3.5e-59 232.6 257 50.6
QL02p005748 Quercus lobata HOM05D003291 ORTHO05D003923 9.0e-55 218.0 229 52.0
CiPaw.16G047400 Carya illinoinensis HOM05D003291 ORTHO05D003923 1.3e-53 214.2 255 49.4
Hma1.2p1_0114F.1_g055190 Hydrangea macrophylla HOM05D003291 ORTHO05D003923 4.9e-53 212.2 137 71.5
CiPaw.16G046700 Carya illinoinensis HOM05D003291 ORTHO05D003923 2.2e-45 186.8 180 55.0
Cre03.g150800 Chlamydomonas reinhardtii HOM05D003291 ORTHO05D003923 1.6e-32 144.1 320 30.0
QL05p050670 Quercus lobata HOM05D003291 ORTHO05D037424 5.5e-20 102.4 65 69.2
Os07g0134500 Oryza sativa ssp. japonica HOM05D003291 ORTHO05D003923 2.1e-19 100.5 61 67.2
MBI03_g35289_MAGBIO Magnolia biondii HOM05D003291 ORTHO05D003923 8.8e-18 95.1 67 62.7
HanXRQChr02g0059141 Helianthus annuus HOM05D002478 ORTHO05D225200 2.5e-12 77.0 42 88.1
CBR_g29432 Chara braunii HOM05D003291 ORTHO05D003923 4.8e-08 62.8 41 61.0
MBI03_g45559_MAGBIO Magnolia biondii HOM05D003291 ORTHO05D003923 5.3e-07 59.3 28 78.6
QL05p043868 Quercus lobata HOM05D002794 ORTHO05D337467 3.5e-06 56.6 36 58.3
Cpa.g.c41437 Carica papaya HOM05D003291 ORTHO05D116668 4.5e-06 56.2 37 70.3


User provided reference genes

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